Commit graph

784 commits

Author SHA1 Message Date
Joey Hess
efae085272
fixed reconcileStaged crash when index is locked or in conflict
Eg, when git commit runs the smudge filter.

Commit 428c91606b introduced the crash,
as write-tree fails in those situations. Now it will work, and git-annex
always gets up-to-date information even in those situations. It does
need to do a bit more work, each time git-annex is run with the index
locked. Although if the index is unmodified from the last time
write-tree succeeded, that work is avoided.
2021-05-24 11:33:23 -04:00
Joey Hess
984034f335
filter-branch working aside from some edge cases
Added a note to man page about what happens to information that is
recorded in the private journal. Since it uses Branch.get, that
information will be copied when options allow. It seemed better to allow
it and document it than not allow it, since the options allow excluding
repositories and so can be used to exclude private repos if desired.
2021-05-17 13:24:58 -04:00
Joey Hess
1d16654a22
convert formatLsTree to ByteString for speed 2021-05-17 10:46:24 -04:00
Joey Hess
4bf7940d6b
fileRef: make paths relative and simplified
Fix behavior of several commands, including reinject, addurl, and rmurl
when given an absolute path to an unlocked file, or a relative path that
leaves and re-enters the repository.

To avoid slowing down all the cases where the paths are already ok
with an unncessary call to getCurrentDirectory, put in an optimisation
in relPathCwdToFile. That will probably also speed up other parts of
git-annex by some small amount, but I have not benchmarked.

Note that I did not convert branchFileRef, because it seems likely that
it will be used with a file that is not provided by the user, so is already
in a sane format. This is certainly true for the way git-annex uses it,
though maybe arguable to the extent Git.Ref is a reusable library.
2021-05-07 13:25:59 -04:00
Joey Hess
32138b8cd8
implement annex.privateremote and remote.name.private configs
The slightly unusual parsing in Types.GitConfig avoids the need to look
at the remote list to get configs of remotes. annexPrivateRepos combines
all the configs, and will only be calculated once, so it's nice and
fast.

privateUUIDsKnown and regardingPrivateUUID now need to read from the
annex mvar, so are not entirely free. But that overhead can be optimised
away, as seen in getJournalFileStale. The other call sites didn't seem
worth optimising to save a single MVar access. The feature should have
impreceptable speed overhead when not being used.
2021-04-23 14:21:57 -04:00
Joey Hess
0e830b6bb5
make remoteKeyToRemoteName safer
If it's passed a ConfigKey such as annex.version, avoid returning
an empty remote name and return Nothing instead. Also, foo.bar.baz is
not treated as a remote named "bar".
2021-04-23 13:29:21 -04:00
Joey Hess
5712a7ef93
fix incomplete pattern match warning
There was not really a bug here, because the 2 lists are always the same
length, but the compiler does not know that.
2021-03-30 12:59:53 -04:00
Joey Hess
4611813ef1
Fix bug importing from a special remote into a subdirectory more than one level deep
Which generated unusual git trees that could confuse git merge,
since they incorrectly had 2 subtrees with the same name.

Root of the bug was a) not testing that at all! but also
b) confusing graftdirs, which contains eg "foo/bar" with
non-recursively read trees, which would contain eg "bar"
when reading a subtree of "foo".

It's worth noting that Annex.Import uses graftTree, but it really
shouldn't have needed to. Eg, when importing into foo/bar from a remote,
it's enough to generate a tree of foo/bar/x, foo/bar/y, and does not
include other files that are at the top of the master branch. It uses
graftTree, so it does include the other files, as well as the foo/bar
tree. git merge will do the same thing for both trees. With that said,
switching it away from graftTree would result in another import
generating a new commit that seems to delete files that were there in a
previous commit, so it probably has to keep using graftTree since it
used it before.

This commit was sponsored by Kevin Mueller on Patreon.
2021-03-26 16:04:36 -04:00
Joey Hess
5d78cd9d08
Sped up git-annex init in a clone of an existing repository
Seems that hasOrigin was never finding origin's git-annex branch, so a new
one got created each time. And so then it later needed to merge the two
branches, which is expensive.

Added --no-track to git branch to avoid it displaying a message about
setting up tracking branches. Of course there's no reason to make the
git-annex branch a tracking branch since git-annex auto-merges it.
2021-03-23 15:23:13 -04:00
Joey Hess
a8b837aaef
add git ls-tree --long parser
Not yet used, but allows getting the size of items in the tree fairly
cheaply.

I noticed that CmdLine.Seek uses ls-tree and the feeds the files into
another long-running process to check their size. That would be an
example of a place that might be sped up by using this. Although in that
particular case, it only needs to know the size of unlocked files, not
locked. And since enabling --long probably doubles the ls-tree runtime
or more, the overhead of using it there may outwweigh the benefit.
2021-03-23 12:47:00 -04:00
Joey Hess
ed717cf646
fix handling of subtree
I don't think this actually fixes any buggy behavior in git-annex, I
just noticed that using treeItemToLsTreeItem and then serializing it
resulted in something starting with "160000 blob" rather than
"160000 commit"
2021-03-12 13:24:19 -04:00
Joey Hess
4b57e1c0ad
allow adjusttreeitem to remove submodules 2021-03-12 13:19:23 -04:00
Joey Hess
e07eabbf7f
Fix support for local gcrypt repositories with a space in their URI
Git.Remote.parseRemoteLocation had a hack to handle URIs that contained
characters like spaces, which is something git unfortunately allows
despite not being a valid URI. However, that hack looked for "//" to
guess something was an URI, and these gcrypt URIs, being to a local
path, don't contain that. So instead escape all illegal characters and
check if the resulting thing is an URI.

And that was already done by Git.Construct.fromUrl, so
internally the gcrypt URI with a space looks like "gcrypt::foo%20bar"
and that needs to be de-escaped when converting back from URI to local
repo path.

This change might also allow a few other almost-valid URIs to be handled
as URIs by git-annex. None that contain "//" will change, and any
behavior change should result in git-annex doing closer to a right thing
than it did before, probably.

This commit was sponsored by Noam Kremen on Patreon.
2021-03-09 12:49:51 -04:00
Joey Hess
3a66cd715f
avoid making absolute git remote path relative
When a git remote is configured with an absolute path, use that path,
rather than making it relative. If it's configured with a relative path,
use that.

Git.Construct.fromPath changed to preserve the path as-is,
rather than making it absolute. And Annex.new changed to not
convert the path to relative. Instead, Git.CurrentRepo.get
generates a relative path.

A few things that used fromAbsPath unncessarily were changed in passing to
use fromPath instead. I'm seeing fromAbsPath as a security check,
while before it was being used in some cases when the path was
known absolute already. It may be that fromAbsPath is not really needed,
but only git-annex-shell uses it now, and I'm not 100% sure that there's
not some input that would cause a relative path to be used, opening a
security hole, without the security check. So left it as-is.

Test suite passes and strace shows the configured remote url is used
unchanged in the path into it. I can't be 100% sure there's not some code
somewhere that takes an absolute path to the repo and converts it to
relative and uses it, but it seems pretty unlikely that the code paths used
for a git remote would call such code. One place I know of is gitAnnexLink,
but I'm pretty sure that git remotes never deal with annex symlinks. If
that did get called, it generates a path relative to cwd, which would have
been wrong before this change as well, when operating on a remote.
2021-02-08 13:18:01 -04:00
Joey Hess
e3224ff77d
formatLsTree did not use a tab where git does
Fixed that, and made parserLsTree accept the space as well as tab.

Fixes a reversion that made import of a tree from a special remote result in
a merge that deleted files that were not preferred content of that special
remote.
2021-01-28 12:36:37 -04:00
Joey Hess
e7134ca1eb
avoid partial functions in Git.Url
After the last commit, it was able to throw errors just due to an
unparseable url. This avoids needing to worry about that, as long
as the call site has already checked that it has a parseable url.
2021-01-18 15:07:23 -04:00
Joey Hess
2aa4fab62a
avoid crashing when there are remotes using unparseable urls
Including the non-standard URI form that git-remote-gcrypt uses for rsync.

Eg, "ook://foo:bar" cannot be parsed because "bar" is not a valid port
number. But git could have a remote with that, it would try to run
git-remote-ook to handle it. So, git-annex has to allow for such things,
rather than crashing.

This commit was sponsored by Luke Shumaker on Patreon.
2021-01-18 14:59:08 -04:00
Joey Hess
5193aae385
Bug fix: Fix tilde expansion in ssh urls when the tilde is the last character in the url. Thanks, Grond for the patch. 2021-01-18 12:22:48 -04:00
Joey Hess
dc0caef297
merge from git-repair 2021-01-11 21:57:35 -04:00
Joey Hess
33bcee86f1
avoid using wildcard near bug kyle fixed 2021-01-07 13:44:23 -04:00
Kyle Meyer
fd161da2c2
adjustTree: Consider submodule deletions
In addition to regular file deletions, the removefiles argument passed
to adjustTree may contain removed submodules.  When making the new
tree, filter these out in the same way that is done for regular files
so that the deletion is propagated.
2021-01-07 13:43:09 -04:00
Joey Hess
cc89699457
mincopies
This is conceptually very simple, just making a 1 that was hard coded be
exposed as a config option. The hard part was plumbing all that, and
dealing with complexities like reading it from git attributes at the
same time that numcopies is read.

Behavior change: When numcopies is set to 0, git-annex used to drop
content without requiring any copies. Now to get that (highly unsafe)
behavior, mincopies also needs to be set to 0. It seemed better to
remove that edge case, than complicate mincopies by ignoring it when
numcopies is 0.

This commit was sponsored by Denis Dzyubenko on Patreon.
2021-01-06 14:15:19 -04:00
Joey Hess
1c5fc8f047
Git.Queue: allow providing git common options like -c 2021-01-04 12:51:55 -04:00
Joey Hess
cd776ecb2e
avoid combining queued commands with different params
I don't think this affected git-annex currently, but if the same command
was queued twice with different params, one set of params was thrown
away, and the files going with those were run with the other set of
params.
2021-01-04 12:41:19 -04:00
Joey Hess
5d8e4a7c74
avoid borg list of archives that have been listed before
This makes sync a lot faster in the common case where there's no new
backup.

There's still room for it to be faster. Currently the old imported tree
has to be traversed, to generate the ImportableContents. Which then
gets turned around to generate the new imported tree, which is
identical. So, it would be possible to just return a "no new imports",
or an ImportableContents that has a way to graft in a tree. The latter
is probably too far to go to optimise this, unless other things need it.
The former might be worth it, but it's already pretty fast, since git
ls-tree is pretty fast.
2020-12-22 14:06:40 -04:00
Joey Hess
a3b714ddd9
finish fixing removeLink on windows
9cb250f7be got the ones in RawFilePath,
but there were others that used the one from unix-compat, which fails at
runtime on windows. To avoid this,
import System.PosixCompat.Files hiding removeLink

This commit was sponsored by Ethan Aubin.
2020-11-24 13:20:44 -04:00
Joey Hess
804808d569
squash build warnings on windows 2020-11-23 14:00:17 -04:00
Joey Hess
fcb1d67b41
fix build on windows 2020-11-20 12:53:25 -04:00
Joey Hess
ff0927bde9
converted reads from stderr to use hGetLineUntilExitOrEOF
These are all unlikely to suffer from the inherited stderr fd problem,
but who knows, it could happen.
2020-11-19 16:21:17 -04:00
Joey Hess
66497d39b3
convert git config reading to use hGetLineUntilExitOrEOF
Much nicer than the old hack of waiting for a few seconds for stderr to be read.
2020-11-19 15:38:43 -04:00
Joey Hess
6b63278f31
init: When writing hook scripts, set all execute bits, not only the user execute bit 2020-11-17 13:31:12 -04:00
Joey Hess
0121f5f6d3
support parsing numeric git configs as bool
I'm not sure if git documents it aside from 0 and 1, but any integer
can be interpreted as a bool by it. Doing the same in git-annex is good
for consistency. Also, I am planning a config that starts out as a
numeric range, but will later transition to a simple bool (hopefully),
which this interpretation supports well.
2020-11-16 10:09:25 -04:00
Joey Hess
885974be99
add newtypes for QuickCheck to avoid LANG=C issues
All properties changed to use them, except for
prop_encode_c_decode_c_roundtrip, which already filtered to ascii
for other reasons.

A few modules had to be split out, because Setup does not build-depend
on QuickCheck.
2020-11-09 20:21:18 -04:00
Joey Hess
2c8cf06e75
more RawFilePath conversion
Converted file mode setting to it, and follow-on changes.

Compiles up through 369/646.

This commit was sponsored by Ethan Aubin.
2020-11-05 18:45:37 -04:00
Joey Hess
5a1e73617d
finished this stage of the RawFilePath conversion
Finally compiles again, and test suite passes.

This commit was sponsored by Brock Spratlen on Patreon.
2020-11-04 14:20:37 -04:00
Joey Hess
eb42cd4d46
more RawFilePath conversion
535/645

This commit was sponsored by Brett Eisenberg on Patreon.
2020-11-03 10:11:04 -04:00
Joey Hess
55400a03d3
more RawFilePath conversion
This commit was sponsored by Luke Shumaker on Patreon.
2020-11-02 16:31:28 -04:00
Joey Hess
87f91ce563
more RawFilePath conversion
451/645
2020-10-30 15:55:59 -04:00
Joey Hess
681b44236a
more RawFilePath conversion
at 377/645

This commit was sponsored by Svenne Krap on Patreon.
2020-10-29 14:20:57 -04:00
Joey Hess
f45ad178cb
more RawFilePath conversion
At 318/645 after 4k lines of changes

This commit was sponsored by Jake Vosloo on Patreon.
2020-10-29 12:03:50 -04:00
Joey Hess
e505c03bcc
more RawFilePath conversion
nukeFile replaced with removeWhenExistsWith removeLink, which allows
using RawFilePath. Utility.Directory cannot use RawFilePath since setup
does not depend on posix.

This commit was sponsored by Graham Spencer on Patreon.
2020-10-29 10:50:29 -04:00
Joey Hess
8d66f7ba0f
more RawFilePath conversion
Added a RawFilePath createDirectory and kept making stuff build.

Up to 296/645

This commit was sponsored by Mark Reidenbach on Patreon.
2020-10-28 17:25:59 -04:00
Joey Hess
b8bd2e45e3
more RawFilePath conversion
Notable wins in Annex.Locations which was sometimes doing 6 conversions
in a single function call.

This commit was sponsored by Denis Dzyubenko on Patreon.
2020-10-28 16:24:14 -04:00
Joey Hess
6c29817748
RawFilePath version of getCurrentDirectory
This commit was sponsored by Jochen Bartl on Patreon
2020-10-28 16:03:45 -04:00
Joey Hess
08cbaee1f8
more RawFilePath conversion
Most of Git/ builds now.

Notable win is toTopFilePath no longer double converts

This commit was sponsored by Boyd Stephen Smith Jr. on Patreon.
2020-10-28 15:55:30 -04:00
Joey Hess
f167851628
Revert "pass --git-dir, rather than changing cwd"
This reverts commit c142696c58.

It turns out it was not needed; 681313dfd4
fixed up the git dir, so setting cwd to it works ok.

But worst, this commit broke the test suite massively. I don't understand how.
git-annex get was failing. Very weirdly, git-annex find in a fresh
clone of an annex repo, during autoinit, was displaying a side message
-- but side messages are disabled when running find.
2020-10-23 16:09:50 -04:00
Joey Hess
681313dfd4
deal with .git pointer file in Git.CurrentRepo
This fixes the bug.

Note, it's only done when GIT_DIR is set. When it's not set,
Git.Construct already handled it. This is why it was only noticed with this
git submodule command.

This commit was sponsored by Brett Eisenberg on Patreon.
2020-10-23 14:56:12 -04:00
Joey Hess
c142696c58
pass --git-dir, rather than changing cwd
If .git is a gitlink file, setting cwd to it will fail, but --git-dir
will succeed. And this is the only place where it sets cwd when running
git, everywhere else already uses --git-dir.

Note that, git-annex's submodule fixup code usually converts gitlink
files to symlinks, so this wasn't usually problem. Still, worth fixing.

This commit was sponsored by Svenne Krap on Patreon.
2020-10-23 13:36:56 -04:00
Joey Hess
f624876dc2
remove zombie process in file seeking
This was the last one marked as a zombie. There might be others I don't
know about, but except for in the hypothetical case of a thread dying
due to an async exception before it can wait on a process it started, I
don't know of any.

It would probably be safe to remove the reapZombies now, but let's wait
and so that in its own commit in case it turns out to cause problems.

This commit was sponsored by Boyd Stephen Smith Jr. on Patreon.
2020-09-25 11:38:42 -04:00
Joey Hess
ca454c47f2
explicitly wait for a git process
Eliminate a zombie that was only cleaned up by the later zombie cleanup
code.

This is still not ideal, it would be cleaner if it used conduit or
something, and if the thread gets killed before waiting, it won't stop
the process.

Only remaining zombies are in CmdLine.Seek
2020-09-25 11:03:12 -04:00
Joey Hess
5abb0f86c4
update comments 2020-09-07 13:03:51 -04:00
Joey Hess
41ebed3941
Support git remotes where .git is a file, not a directory
Eg when --separate-git-dir was used, and core.symlinks=false.

This commit was sponsored by Brock Spratlen on Patreon.
2020-08-28 15:08:14 -04:00
Joey Hess
cb74cefde7
Fix a hang when using git-annex with an old openssh 7.2p2
Which had some weird inheriting of ssh FDs by sshd.

Bug was introduced in git-annex version 7.20200202.7.
2020-07-21 16:14:25 -04:00
Joey Hess
b88ecb36dd
remove unused code 2020-07-15 11:16:36 -04:00
Joey Hess
992fe446ad
unused import 2020-07-15 11:16:15 -04:00
Joey Hess
8cd0e351ba
avoid using cat-file --buffer if git is too old
This is only needed for the i386ancient build, so build in the git
version git-annex is built with, assuming git won't be upgraded, or if
it is, they just won't get the speedup of --buffer
2020-07-15 10:56:32 -04:00
Joey Hess
535cdc8d48
importfeed: Made checking known urls step around 10% faster.
This was a bit disappointing, I was hoping for a 2x speedup. But, I think
the metadata lookup is wasting a lot of time and also needs to be made to
stream.

The changes to catObjectStreamLsTree were benchmarked to not also speed
up --all around 3% more. Seems I managed to make it polymorphic after all.
2020-07-14 12:47:51 -04:00
Joey Hess
15c0207a23
reword comment better 2020-07-13 13:03:09 -04:00
Joey Hess
24550e010b
update comment to match behavior 2020-07-13 12:52:57 -04:00
Joey Hess
5387b95dcd
add catObjectMetaDataStream 2020-07-10 14:36:18 -04:00
Joey Hess
bf72316b08
add function split out from CatFile 2020-07-10 13:28:16 -04:00
Joey Hess
bd2d304064
better catObjectStream' and use Chan
The catObjectStream' is generic enough to let it be nicely used from
inside Annex monad.

Chan will be faster than DList here. Bearing in mind, it is unbounded,
but in reality will be bounded by the size of the stdio buffer through
git cat-file.

This speeds up --all by about 10% although I think only getting back to
the previous performance before I introduced that DList.
2020-07-10 13:15:14 -04:00
Joey Hess
cb6e19f4c5
work around catObjectStream polymorism perf
Breaking it up like this doesn't change perf, and lets another version
be written in just a couple lines.
2020-07-09 14:27:07 -04:00
Joey Hess
9f6bd6cc05
add inRepoDetails
planned to use for an optimisation

most things using stagedDetails were not expecting to get dup files in a
conflicted merge and deal with them, so converted them to use
inRepoDetails.
2020-07-08 15:36:35 -04:00
Joey Hess
7347e50123
add stage number to stagedDetails parser
And convert parser to attoparsec, probably faster.

Before, a parse failure threw the whole --stage output line in to the
filename, which was certianly a bad idea, so fixed that.
2020-07-08 15:05:12 -04:00
Joey Hess
c1eaf5b930
note 2020-07-08 14:21:37 -04:00
Joey Hess
d08c178f97
avoid catObjectStream skipping over unavailable shas
Not needed as it's used for --all, but will be needed later.
2020-07-08 13:57:17 -04:00
Joey Hess
de3d7d044d
make catObjectStream support newline and carriage return in filenames
Turns out the %(rest) trick was not needed. Instead, just maintain a
list of files we've asked for, and each cat-file response is for the
next file in the list.

This actually benchmarks 25% faster than before! Very surprising, but it
must be due to needing to shove less data through the pipe, and parse
less.
2020-07-08 13:49:03 -04:00
Joey Hess
d010ab04be
sped up the --all option by 2x to 16x by using git cat-file --buffer
This assumes that no location log files will have a newline or carriage
return in their name. catObjectStream skips any such files due to
cat-file not supporting them.

Keys have been prevented from containing newlines since 2011,
commit 480495beb4. If some old repo
had a key with a newline in it, --all will just skip processing that key.
Other things, like .git/annex/unused files certianly assume no newlines in
keys too, and AFAICR, such keys never actually worked.

Carriage return is escaped by preSanitizeKeyName since 2013. WORM keys
generated before that point could perhaps contain a CR. (URL probably not,
http probably doesn't support an URL with a raw CR in it.) So, added
a warning in fsck about such keys. Although, fsck --all will naturally
skip them, so won't be able to warn about them. Not entirely
satisfactory, but I'll bet there are not really any such keys in
existence.

Thanks to Lukey for finding this optimisation.
2020-07-07 13:54:04 -04:00
Joey Hess
e41f8c83f3
close stdin handles before waiting on commands
Fixes reversion in recent conversions, the old code relied on the GC
apparently, but the new code explicitly waits on the process, so must
close stdin handle first or the command will never exit.
2020-06-05 17:27:49 -04:00
Joey Hess
05703893af
use right handle 2020-06-05 16:38:11 -04:00
Joey Hess
319f2a4afc
audit all uses of SomeException to avoid catching async exceptions
Except for the assistant, which I think may use them between threads?

Most of the uses of SomeException were already catching only async exceptions.
But I did find a few places that were accidentially catching them.
2020-06-05 15:16:57 -04:00
Joey Hess
2670890b17
convert to withCreateProcess for async exception safety
This handles all createProcessSuccess callers, and aside from process
pools, the complete conversion of all process running to async exception
safety should be complete now.

Also, was able to remove from Utility.Process the old API that I now
know was not a good idea. And proof it was bad: The code size went *down*,
despite there being a fair bit of boilerplate for some future API to
reduce.
2020-06-04 15:45:52 -04:00
Joey Hess
438dbe3b66
convert to withCreateProcess for async exception safety
This handles all sites where checkSuccessProcess/ignoreFailureProcess
is used, except for one: Git.Command.pipeReadLazy
That one will be significantly more work to convert to bracketing.

(Also skipped Command.Assistant.autoStart, but it does not need to
shut down the processes it started on exception because they are
git-annex assistant daemons..)

forceSuccessProcess is done, except for createProcessSuccess.
All call sites of createProcessSuccess will need to be converted
to bracketing.

(process pools still todo also)
2020-06-04 12:44:09 -04:00
Joey Hess
2dc7b5186a
convert to withCreateProcess for async exception safety 2020-06-04 12:05:25 -04:00
Joey Hess
92f775eba0
convert to withCreateProcess for async exception safety
Not yet 100% done, so far I've grepped for waitForProcess and converted
everything that uses that to start the process with withCreateProcess.

Except for some things like P2P.IO and Assistant.TransferrerPool,
and Utility.CoProcess, that manage a pool of processes. See #2
in https://git-annex.branchable.com/todo/more_extensive_retries_to_mask_transient_failures/#comment-209f8a8c38e63fb3a704e1282cb269c7
for how those will need to be dealt with.

checkSuccessProcess, ignoreFailureProcess, and forceSuccessProcess calls waitForProcess, so
callers of them will also need to be dealt with, and have not been yet.
2020-06-03 15:48:09 -04:00
Joey Hess
89b2542d3c
annex.skipunknown with transition plan
Added annex.skipunknown git config, that can be set to false to change the
behavior of commands like `git annex get foo*`, to not skip over files/dirs
that are not checked into git and are explicitly listed in the command
line.

Significant complexity was needed to handle git-annex add, which uses some
git ls-files calls, but needs to not use --error-unmatch because of course
the files are not known to git.

annex.skipunknown is planned to change to default to false in a
git-annex release in early 2022. There's a todo for that.
2020-05-28 15:55:17 -04:00
Joey Hess
dfc4e641b5
repair: Improve fetching from a remote with an url in host:path format.
User reported git@my.gitlab.foo:username/myrepo.git didn't work with
git-repair, because it rewrites it to an url
ssh://git@my.gitlab.foo/~/username/myrepo.git
and the /~/ was not something the hosting site supported.

Since git-annex still generally needs the repo url to be well, an url, did
not change the conversion code. But in this case, we're running git fetch,
so we might as well pass it the remote name rather than the url.

Did a quick audit of repoLocation uses to see if there was anything else
like this problem elsewhere, and didn't see any. But this is not the first
time this special case in git and git-annex's attempt to de-special-case
it has caused a problem..
2020-05-04 15:32:06 -04:00
Joey Hess
f85ca7dc80
fix all remaining -Wincomplete-uni-patterns warnings
A couple of these were probably actual bugs in edge cases. Most of the
changes I'm fine with. The fact that aeson's object returns sometihng
that we know will be an Object, but the type checker does not know is
kind of annoying.
2020-04-15 13:55:08 -04:00
Joey Hess
bcc0ec5b99
fix runtime crash on incomplete pattern match in lambda
This was very susprising to me that it was not caught by -Wall, so I
enabled -Wincomplete-uni-patterns to catch such things. It found a
second one just lines above, but no others anywhere.
2020-04-13 16:03:21 -04:00
Joey Hess
5a62e8132d
When parsing git configs, support all the documented ways to write true and false, including "yes", "on", "1", etc.
This change does impact git-annex config
eg "git annex config --set annex.addunlocked on"
will store "on" and new git-annex will understand that value, while
old git-annex will error:
git-annex: bad annex.addunlocked configuration in git annex config:
Parse failure: near "on"
That seems acceptable.

Not special remote configs that are only documented as =true or =false
however. Having git-annex support other values for those would break
backwards compatability when used with old versions of git-annex. And
older versions ignore invalid special remote configs.. That would not
be a good combination.
2020-04-13 14:05:30 -04:00
Joey Hess
9cb69dbb76
support boolean git configs that are represented by the name of the setting with no value
Eg"core.bare" is the same as "core.bare = true".

Note that git treats "core.bare =" the same as "core.bare = false", so the
code had to become more complicated in order to treat the absense of a
value differently than an empty value. Ugh.
2020-04-13 13:35:22 -04:00
Joey Hess
ca9c6c5f60
Fix a potential failure to parse git config
Git has an obnoxious special case in git config, a line "foo" is the same
as "foo = true". That means there is no way to examine the output of
git config and tell if it was run with --null or not, since a "foo"
in the first line could be such a boolean, or could be followed by its
value on the next line if --null were used.

So, rather than trying to do such a detection, track the style of config
at all the points where it's generated.
2020-04-13 13:05:41 -04:00
Joey Hess
86426036a0
optimise catfile interface with ByteString and Attoparsec
Around 3% total speedup.

Profiling git annex find --not --in web, it's now bytestring end-to-end,
and there is only a little added overhead in eg accessing the Annex
state MVar (3%). The rest of the runtime is spent reading symlinks, and
in attoparsec.

This feels like the end of the optimisation road, without a major change
like caching information for faster queries.
2020-04-10 14:18:52 -04:00
Joey Hess
3c369997fc
remove unused import 2020-04-08 14:04:58 -04:00
Joey Hess
c0cd07c36b
Ref ByteString conversion done
Test suite passes.
2020-04-07 17:41:09 -04:00
Joey Hess
6c81e0c8f1
ByteString Ref continued
Several nice speed wins I think.

At 340/633 files converted.
2020-04-07 13:27:11 -04:00
Joey Hess
d5d8259937
ByteString Ref continued
Attoparsec parser for diff-tree.

Changed fromRef back to producing a String, to avoid needing to convert
every use of it. However, this does mean I'm going to miss some
opportunities where fromRef is used and the result converted back to a
ByteString. Would be worth revisiting that at some point maybe.
2020-04-07 11:54:27 -04:00
Joey Hess
279991604d
started converting Ref from String to ByteString
This should make code that reads shas and refs from git faster.

Does not compile yet, a lot needs to be done still.
2020-04-06 17:14:49 -04:00
Kyle Meyer
376e69ec65
adjust: Propagate submodule changes back to original branch
When the recorded submodule commit changes on an adjusted branch, the
change is carried in the function that reverseAdjustedCommit passes
for adjustTree's adjusttreeitem parameter.  Update the CommitObject
handling in adjustTree to consider adjusttreeitem so that a submodule
change is synced back.
2020-03-26 15:16:08 -04:00
Joey Hess
3440b77d1e
guard against unsafe git ls-files uses
This breaks several parts of the upgrade code, when upgrading remotes
of the current repo, but those parts were buggy, and will need to be
fixed somehow anyway.
2020-03-09 15:55:34 -04:00
Joey Hess
9bbb73469e
foo 2020-03-09 15:55:00 -04:00
Joey Hess
70d24c0302
add a comment about CWD
While git ls-files can actually be used on a repo that is not in the
cwd, it works inconsistently. For example, this fails:

git --git-dir=../foo/.git --work-tree=../foo ls-files ../foo

But change some of the paths to absolute and it will succeed. That seems
like a bug in git.

OTOH, this succeeds:

git --git-dir=../foo/.git --work-tree=../foo ls-files

But, that lists paths relative to the top of the --work-tree,
rather than the usual listing them relative to the cwd. Because the cwd
is not in the repo. And so anything parsing the ls-files output of that
is likely to operate on files in the wrong location. Indeed, there is
code in Upgrade/ that has this problem!
2020-03-09 13:37:01 -04:00
Joey Hess
7f992ef59c
mostly finished with createDirectoryUnder conversion
Remaining things needing converted are in the assistant, and Annex.Ssh.

Every other remaining call to createDirectoryIfMissing True has been
audited and is not relevant. The ones in Build/ of course don't get
included in the program. Others included eg, Remote.Tahoe and
Config.Files which both write to dotfiles under the home directory.
2020-03-06 11:57:15 -04:00
Joey Hess
029c883713
Merge branch 'master' into v8 2020-02-19 14:32:11 -04:00
Joey Hess
1f0fc9ff5f
remove unused import 2020-02-19 13:13:13 -04:00
Joey Hess
1883f7ef8f
support git remotes that need http basic auth
using git credential to get the password

One thing this doesn't do is wrap the password prompting inside the prompt
action. So with -J, the output can be a bit garbled.
2020-01-22 16:16:19 -04:00
Joey Hess
75059c9f3b
better error message when git config fails to parse remote config
Rather than leaking the name of the temp file, just say the config parse
failed, and where the config was downloaded from.

Not closing the bug report because two issues were reported in the same
bug report, because the universe wants me to continually re-read old
unclosed bug reports to waste my time determining what still needs to be
done.
2020-01-22 13:35:54 -04:00
Joey Hess
6db4aee7df
use --no-abbrev instead of --abbrev=40
This avoids hardcoding the sha size, so when git uses sha256, it will
output the full sha256 and not a truncation to 40 characters.

I reviewed git's history, and while there have been some
bugs with commands not supporting --no-abbrev (eg git diff --no-index
--no-abbrev was broken in git 2.1), none of the commands git-annex
uses will be impacted by those old bugs.
2020-01-07 12:29:37 -04:00
Joey Hess
5e4deb3620
support sha256 git repos
Git will eventually switch to sha2 and there will not be one single
shaSize anymore, but two (40 and 64).

Changed all parsers for git plumbing output to support both sizes of
shas.

One potential problem this does not deal with is, if somewhere in
git-annex it reads two shas from different sources, and compares them
to see if they're the same sha, it would fail if they're sha1 and sha256
of the same value. I don't know if that will really be a concern.
2020-01-07 12:22:19 -04:00
Joey Hess
2cea674d1e
Merge branch 'master' into v8 2020-01-01 14:26:43 -04:00
Joey Hess
022dead40a
windows build fix 2020-01-01 13:46:03 -04:00
Joey Hess
f0b53d8465
windows build fix 2020-01-01 13:12:33 -04:00
Joey Hess
e006acc8e3
fix quickcheck failure
prop_encode_decode_roundtrip failed on "\175" in C locale.

This may be a new problem after the switch to RawFilePath, but it
already had filtering for high chars, so changed to only test ascii
chars.
2019-12-30 13:54:46 -04:00
Joey Hess
ea3cb7d277
fix a case where file tracked by git unexpectedly becomes annex pointer file
smudge: When annex.largefiles=anything, files that were already stored in
git, and have not been modified could sometimes be converted to being
stored in the annex. Changes in 7.20191024 made this more of a problem.
This case is now detected and prevented.
2019-12-27 15:08:03 -04:00
Joey Hess
2b821eb225
Merge branch 'master' into sqlite 2019-12-26 15:15:42 -04:00
Joey Hess
37467a008f
annex.addunlocked expressions
* annex.addunlocked can be set to an expression with the same format used by
  annex.largefiles, in case you want to default to unlocking some files but
  not others.
* annex.addunlocked can be configured by git-annex config.

Added a git-annex-matching-expression man page, broken out from
tips/largefiles.

A tricky consequence of this is that git-annex add --relaxed
honors annex.addunlocked, but an expression might want to know the size
or content of an url, which it's not going to download. I decided it was
better not to fail, and just dummy up some plausible data in that case.

Performance impact should be negligible. The global config is already
loaded for annex.largefiles. The expression only has to be parsed once,
and in the simple true/false case, it should not do any additional work
matching it.
2019-12-20 15:56:25 -04:00
Joey Hess
02e00fd7ab
Merge branch 'master' into sqlite 2019-12-19 16:33:42 -04:00
Joey Hess
16125694eb
keep filename ByteString
Minor optimisation, since it still has to be copied from lazy to strict,
but it will add up when doing a big merge.
2019-12-18 15:57:40 -04:00
Joey Hess
d5628a16b8
Merge branch 'bs' into sqlite-bs 2019-12-18 14:51:03 -04:00
Joey Hess
bdec7fed9c
convert TopFilePath to use RawFilePath
Adds a dependency on filepath-bytestring, an as yet unreleased fork of
filepath that operates on RawFilePath.

Git.Repo also changed to use RawFilePath for the path to the repo.

This does eliminate some RawFilePath -> FilePath -> RawFilePath
conversions. And filepath-bytestring's </> is probably faster.
But I don't expect a major performance improvement from this.
This is mostly groundwork for making Annex.Location use RawFilePath,
which will allow for a conversion-free pipleline.
2019-12-09 15:07:21 -04:00
Joey Hess
2f9a80d803
merging sqlite and bs branches
Since the sqlite branch uses blobs extensively, there are some
performance benefits, ByteStrings now get stored and retrieved w/o
conversion in some cases like in Database.Export.
2019-12-06 15:30:45 -04:00
Joey Hess
f39f018ee0
fix git ls-tree parser
File mode is octal not decimal. This broke in the conversion to
attoparsec.

(I've submitted the content of Utility.Attoparsec to the attoparsec
developers.)

Test suite passes 100% now.
2019-12-06 14:05:48 -04:00
Joey Hess
4aaef14c61
fix another quickcheck property broken by NUL in Arbitrary String 2019-12-06 13:13:08 -04:00
Joey Hess
faf5415163
add back lost filtering of multibyte chars in prop_encode_decode_roundtrip
I had thought using ByteString would avoid the problem, but the
quickcheck property is still taking Arbitrary String input, so the use
of ByteString internally doesn't matter.
2019-12-06 12:14:55 -04:00
Joey Hess
c20f4704a7
all commands building except for assistant
also, changed ConfigValue to a newtype, and moved it into Git.Config.
2019-12-05 14:41:18 -04:00
Joey Hess
3c7fd09ec8
get many more commands building again
about half are building now
2019-12-05 11:40:10 -04:00
Joey Hess
f3047d7186
include git-annex-shell back in
Also pushed ConfigKey down into the Git modules, which is the bulk of
the changes.
2019-12-02 11:51:52 -04:00
Joey Hess
d7833def66
use ByteString for git config
The parser and looking up config keys in the map should both be faster
due to using ByteString.

I had hoped this would speed up startup time, but any improvement to
that was too small to measure. Seems worth keeping though.

Note that the parser breaks up the ByteString, but a config map ends up
pointing to the config as read, which is retained in memory until every
value from it is no longer used. This can change memory usage
patterns marginally, but won't affect git-annex.
2019-11-27 17:40:09 -04:00
Joey Hess
d830386ab2
update based on profiling
While L.toStrict copies, profiling showed it was only around 0.3% of
git-annex find runtime. Does not seem worth optimising that, which would
probably involve either a major refactoring, or a use of
UnsafeInterleaveIO.

Also, it seems to me that the latter would need to read chunks, and
preappend the leftover part to the next chunk. But a strict ByteString
append itself is a copy, so I'm not convinced that would be faster than
L.toStrict.
2019-11-27 14:09:11 -04:00
Joey Hess
067aabdd48
wip RawFilePath 2x git-annex find speedup
Finally builds (oh the agoncy of making it build), but still very
unmergable, only Command.Find is included and lots of stuff is badly
hacked to make it compile.

Benchmarking vs master, this git-annex find is significantly faster!
Specifically:

	num files	old	new	speedup
	48500		4.77	3.73	28%
	12500		1.36	1.02	66%
	20		0.075	0.074	0% (so startup time is unchanged)

That's without really finishing the optimization. Things still to do:

* Eliminate all the fromRawFilePath, toRawFilePath, encodeBS,
  decodeBS conversions.
* Use versions of IO actions like getFileStatus that take a RawFilePath.
* Eliminate some Data.ByteString.Lazy.toStrict, which is a slow copy.
* Use ByteString for parsing git config to speed up startup.

It's likely several of those will speed up git-annex find further.
And other commands will certianly benefit even more.
2019-11-26 16:01:58 -04:00
Joey Hess
6a97ff6b3a
wip RawFilePath
Goal is to make git-annex faster by using ByteString for all the
worktree traversal. For now, this is focusing on Command.Find,
in order to benchmark how much it helps. (All other commands are
temporarily disabled)

Currently in a very bad unbuildable in-between state.
2019-11-25 16:18:19 -04:00
Joey Hess
d4661959de
Merge branch 'master' into sqlite 2019-11-21 17:26:50 -04:00
Joey Hess
43f19ef00a
Fix bug that made bare repos be treated as non-bare when --git-dir was used.
Eg:

git clone url --bare r
git --git-dir r annex init

This resulted in worktree = Just "." and so several things that check
worktree to determine when the repo is bare ran code paths intended for
non-bare. One such code path[1] ran git checkout with --worktree=. which
actually makes it ignore core.bare config, and so the current directory
got populated with a checkout of the master branch in this example. There
was probably also other breakage.

The fix is a bit complicated because whether the repo is bare is not
known until after Git.Config reads the config, but Git.Config handles
setting the RepoLocations's worktree when core.worktree is set. So have
to assume the worktree is the cwd, let core.worktree override that,
and then if the repo turns out to be bare, it's set back to Nothing.
(And then GIT_WORK_TREE can still override all of that.)

[1] switchHEADBack, which runs even when the clone is not from a bare repo.
2019-11-21 13:26:02 -04:00
Joey Hess
5877de5e80
git-lfs: remember urls, and autoenable remotes using known urls
* git-lfs: The url provided to initremote/enableremote will now be
  stored in the git-annex branch, allowing enableremote to be used without
  an url. initremote --sameas can be used to add additional urls.
* git-lfs: When there's a git remote with an url that's known to be
  used for git-lfs, automatically enable the special remote.
2019-11-18 16:09:09 -04:00
Joey Hess
99536e3a0b
remove one more warningIO
Had to generalize Git.Queue so it can run an Annex action, yipes.

Only remaining warningIO are in the legacy chunk code.
2019-11-12 10:45:52 -04:00
Joey Hess
dc9295017f
v8 upgrade of keys db
Renamed the database to .git/annex/keysdb;
the old .git/annex/keys gets deleted during the upgrade.

It is possible that an old git-annex process is running during the
upgrade. If so, it will be able to continue using the old keys db until the
upgrade is complete, and then will presumably fail in some ugly way. Or
perhaps the upgrade will be unable to delete the open files on some
systems, and so fail with an ugly error message.

It's also possible for multiple processes to be running the upgrade
concurrently. That should be fine; they will both write the same
information into the keys db.

Other databases still need to be upgraded.
2019-11-06 16:16:00 -04:00
Joey Hess
89bdcffdfa
found a way to extract InodeCache from git index
This will allow a race-free database transition. It is somewhat hairy in
that it depends on an unspecified git output format.
2019-11-06 14:23:00 -04:00
Joey Hess
25f912de5b
benchmark: Add --databases to benchmark sqlite databases
Rescued from commit 11d6e2e260 which removed
db benchmarks in favor of benchmarking arbitrary git-annex commands. Which
is nice and general, but microbenchmarks are useful too.
2019-10-29 16:59:27 -04:00
Joey Hess
bbdeb1a1a8
sync: Fix crash when there are submodules and an adjusted branch is checked out
Reverse adjusting the branch uses treeItemToTreeContent, which was missed
when adding submodule support earlier.
2019-10-23 11:52:56 -04:00
Joey Hess
f4dd7d5191
work around windows having infected git's plumbing
Work around git cat-file --batch's odd stripping of carriage return from
the end of the line (some windows infection), avoiding crashing when the
repo contains a filename ending in a carriage return.
2019-10-08 15:27:05 -04:00
Joey Hess
45e5cc63b5
typo 2019-09-24 14:34:15 -04:00
Joey Hess
9418b516ac
git-credential interface 2019-09-24 12:39:54 -04:00
Joey Hess
92ea93ee21
update wording to match current wording in git 2019-09-15 19:01:05 -04:00
Joey Hess
fef3cd055d
Removed support for git versions older than 2.1
debian oldoldstable has 2.1, and that's what i386ancient uses. It would be
better to require git 2.2, which is needed to use adjusted branches, but
can't do that w/o losing support for some old linux kernels or a
complicated git backport.
2019-09-11 16:14:43 -04:00
Joey Hess
3f0eef4baa
v7 for all repositories
* Default to v7 for new repositories.
* Automatically upgrade v5 repositories to v7.
2019-08-30 14:09:14 -04:00
Joey Hess
dc672863c3
init: Install working hook scripts when run on a crippled filesystem and on Windows 2019-08-13 15:14:17 -04:00
Joey Hess
bf5dd723d3
Fix querying git for object type when operating on a file containing newlines
This typo would make "git cat-file cat-file" fail, and the way it's used,
I think it broke querying all info from filenames containing newlines,
because the other queries are only run when it succeeds.
2019-08-07 13:35:42 -04:00
Joey Hess
6c1130a3bb
lfs endpoint discovery and caching in git-lfs special remote 2019-08-02 12:38:14 -04:00
Joey Hess
8028f14957
correct the comment to match the implementation 2019-07-16 12:28:44 -04:00
Joey Hess
9a5ddda511
remove many old version ifdefs
Drop support for building with ghc older than 8.4.4, and with older
versions of serveral haskell libraries than will be included in Debian 10.

The only remaining version ifdefs in the entire code base are now a couple
for aws!

This commit should only be merged after the Debian 10 release.
And perhaps it will need to wait longer than that; it would make
backporting new versions of  git-annex to Debian 9 (stretch) which
has been actively happening as recently as this year.

This commit was sponsored by Ilya Shlyakhter.
2019-07-05 15:09:37 -04:00
Joey Hess
8e5ea28c26
finish CommandStart transition
The hoped for optimisation of CommandStart with -J did not materialize.
In fact, not runnign CommandStart in parallel is slower than -J3.
So, CommandStart are still run in parallel.

(The actual bad performance I've been seeing with -J in my big repo
has to do with building the remoteList.)

But, this is still progress toward making -J faster, because it gets rid
of the onlyActionOn roadblock in the way of making CommandCleanup jobs
run separate from CommandPerform jobs.

Added OnlyActionOn constructor for ActionItem which fixes the
onlyActionOn breakage in the last commit.

Made CustomOutput include an ActionItem, so even things using it can
specify OnlyActionOn.

In Command.Move and Command.Sync, there were CommandStarts that used
includeCommandAction, so output messages, which is no longer allowed.
Fixed by using startingCustomOutput, but that's still not quite right,
since it prevents message display for the includeCommandAction run
inside it too.
2019-06-12 13:24:01 -04:00
Joey Hess
97fd9da6e7
add back non-preferred files to imported tree
Prevents merging the import from deleting the non-preferred files from
the branch it's merged into.

adjustTree previously appended the new list of items to the old, which
could result in it generating a tree with multiple files with the same
name. That is not good and confuses some parts of git. Gave it a
function to resolve such conflicts.

That allowed dealing with the problem of what happens when the import
contains some files (or subtrees) with the same name as files that were
filtered out of the export. The files from the import win.
2019-05-20 16:43:52 -04:00
Joey Hess
ecdbdf6180
add --verify
Needed for the --quiet to actually shut it up. The extra verification
this makes it do should be fine, as this is supposed to really return a
single tree's sha.
2019-05-06 16:41:01 -04:00
Joey Hess
d08c19defb
avoid git warning on first import of subdir from a remote
git rev-parse --quiet avoids "fatal: Invalid object name" when the
branch does not exist. Git.Ref.tree already returned a Maybe, so callers
already handle those cases themselves.
2019-05-06 16:29:34 -04:00
Joey Hess
4a8f02e939
don't empty historyCommitParents 2019-05-01 13:38:40 -04:00
Joey Hess
b69d11ec42
wip 2019-04-30 14:00:27 -04:00
Joey Hess
b9b3567747
added Git.History 2019-04-24 14:55:49 -04:00
Joey Hess
c8f7cb8558
fix incorrect comment
The process will typically block until all input is read.
2019-04-24 14:29:46 -04:00
Joey Hess
b6a3d0ae10
fix test suite when git is too old to understand --allow-unrelated-histories 2019-03-22 13:49:22 -04:00