Fix typo in commit 160d4b9 ("convert Unused, and remove some dead code
for old style option parsing", 2015-07-10), the "git-annex unused
--used-refspec" option was incorrectly changed to --unused-refspec.
Ben Boeckel had a patch, but..
Actually, that was not the only place that used ScheduleIncremental when
built w/o database. Since the data type doesn't need database stuff,
I've instead fixed this build problem by exposing the
ScheduleIncremental constructor to database-less builds.
Note that I had one in Annex.Action.startup too, but it resulted in a weird
message printed by ssh, "channel 2: bad ext data". I don't know why, but
it only happened when transferinfo was run, so I wonder
if 983a95f021 introduced a fragility somehow.
This was potentially a hole in the readonly mode armor even before my last
commit. If the user could push a git-annex branch to a repo, they could get
git-annex-shell to initialize the repo. After my last commit, the user
didn't even need to be allowed to push a branch to init the repo, so
this hole certianly needs to be closed now.
Now it suffices to run git remote add, followed by git-annex sync. Now the
remote is automatically initialized for use by git-annex, where before the
git-annex branch had to manually be pushed before using git-annex sync.
Note that this involved changes to git-annex-shell, so if the remote is
using an old version, the manual push is still needed.
Implementation required git-annex-shell be changed, so configlist can
autoinit a repository even when no git-annex branch has been pushed yet.
Unfortunate because we'll have to wait for it to get deployed to servers
before being able to rely on this change in the documentation.
Did consider making git-annex sync push the git-annex branch to repos that
didn't have a uuid, but this seemed difficult to do without complicating it
in messy ways.
It would be cleaner to split a command out from configlist to handle
the initialization. But this is difficult without sacrificing backwards
compatability, for users of old git-annex versions which would not use the
new command.
Git.Ref.headSha doesn't really work in direct mode as there's not a head,
so it was actually diffing against the empty tree and so not removing any
deleted files. Get the sha of the current branch instead, which is the same
thing Command.Sync does.
* proxy: Fix proxy git commit of non-annexed files in direct mode.
* proxy: If a non-proxied git command, such as git revert
would normally fail because of unstaged files in the work tree,
make the proxied command fail the same way.
* Perform a clean shutdown when --time-limit is reached.
This includes running queued git commands, and cleanup actions normally
run when a command is finished.
* fsck: Commit incremental fsck database when --time-limit is reached.
Previously, some of the last files fscked did not make it into the
database when using --time-limit.
Note that this changes Annex.addCleanup hooks, to run after --time-limit
expires. Fsck was using such a hook to clean up after a
--incremental-schedule, and that shouldn't run when --time-limit exipires
it. So, instead, moved that cleanup code to be run by cleanupIncremental.
Resulted in some data type juggling.
I've seen rss feeds that have no permalinks, only guids (which are
sometimes in the form of permalinks, argh/sigh).
I had previously avoided trusting guids to be globally unique, because my
survey of rss feeds that I subscribe to shows a lot of pretty bad
"guids" like "2 at http://serialpodcast.org" or even worse "oth20150401-hq".
Worry was that two podcasts that are generating guids so badly, that
there's no guarantee they're actually globally unique.
But, I'm seeing too many url changes that result in redundant files, so
let's try this. If feeds are so broken that guids overlap, they could just
as well incorrectly call them permalinks too.
This is a work in progress. It compiles and is able to do basic command
dispatch, including git autocorrection, while using optparse-applicative
for the core commandline parsing.
* Many commands are temporarily disabled before conversion.
* Options are not wired in yet.
* cmdnorepo actions don't work yet.
Also, removed the [Command] list, which was only used in one place.
The branch needs to be created when merging from the remote in sync,
since we diff between it and the remote's sync branch. But git annex merge
should not be creating sync branches.
This is needed because when preferred content matches on files,
the second pass would otherwise want to drop all keys. Using a bloom filter
avoids this, and in the case of a false positive, a key will be left
undropped that preferred content would allow dropping. Chances of that
happening are a mere 1 in 1 million.
This makes git annex unused use around 48 mb more memory than it did before,
but the massive increase in accuracy makes this worthwhile for all but the
smallest systems.
Also, I want to use the bloom filter for sync --all --content, to avoid
dropping files that the preferred content doesn't want, and 1/1000
false positives would be far too many in that use case, even if it were
acceptable for unused.
Actual memory use numbers:
1000: 21.06user 3.42system 0:26.40elapsed 92%CPU (0avgtext+0avgdata 501552maxresident)k
1000000: 21.41user 3.55system 0:26.84elapsed 93%CPU (0avgtext+0avgdata 549496maxresident)k
10000000: 21.84user 3.52system 0:27.89elapsed 90%CPU (0avgtext+0avgdata 549920maxresident)k
Based on these numbers, 10 million seemed a better pick than 1 million.
This removes a bit of complexity, and should make things faster
(avoids tokenizing Params string), and probably involve less garbage
collection.
In a few places, it was useful to use Params to avoid needing a list,
but that is easily avoided.
Problems noticed while doing this conversion:
* Some uses of Params "oneword" which was entirely unnecessary
overhead.
* A few places that built up a list of parameters with ++
and then used Params to split it!
Test suite passes.
This is especially useful because the caller doesn't need to generate valid
url keys, which involves some escaping of characters, and may involve
taking a md5sum of the url if it's too long.
Only the assistant uses these, and only the assistant cleans them up, so
make only git annex transferkeys write them,
There is one behavior change from this. If glacier is being used, and a
manual git annex get --from glacier fails because the file isn't available
yet, the assistant will no longer later see that failed transfer file and
retry the get. Hope no-one depended on that old behavior.
This potentially fixes a numcopies counting bug when dropping --from a
remote, and the local repository is trusted. The local repo would end up in
the list twice, so it would verify one less copy than it was supposed to.
This is a nearly free feature; it piggybacks on the location log lookups
done for the numcopies stats. So, the only extra overhead is updating
the map of repository sizes.
However, I had to switch to Data.Map.Strict, which needs containers 0.5.
If backporting to wheezy, will probably need to revert this commit.
This works, and seems fairly robust. Clean get of 20 files at -J3. At -J10,
there are some messages about ssh multiplexing, probably due to a race
spinning up the ssh connection cacher. But, it manages to get all the files
ok regardless.
The progress bars are a scrambled mess though, due to bugs in
ascii-progress, which I've already filed. Particularly this one:
https://github.com/yamadapc/haskell-ascii-progress/issues/8
Seen for example, a newly checked out git submodule. In this case,
.git/HEAD is a raw sha, rather than the usual reference to a ref.
Removed currentSha in passing, since it was a more roundabout way of
doing what headSha does, and headSha is more robust.
Most of the time, there will be no discreprancy between programPath and
readProgramFile.
But, the programFile might have been written by an old version of git-annex
that is still installed, while a newer one is currently running. In this
case, we want to run the same one that's currently running.
This is especially important for things like the GIT_SSH=git-annex used for
ssh connection caching.
The only code that still uses readProgramFile directly is the upgrade code,
which needs to know where the standalone git-annex was installed, in order to
upgrade it.
See my comment in the bug report for analysis; basically this is safe
because it's a non-forced push, so won't lose history. Even if it was a
forced push or somehow races, things will eventually become consistent and
no git-annex branch info will be lost.
(This used to be done, but it forgot to do it since version 4.20130909.)
Turns out sqlite does not like having its database deleted out from
underneath it. It might suffice to empty the table, but I would rather
start each fsck over with a new database, so I added a lock file, and
running incremental fscks use a shared lock.
This leaves one concurrency bug left; running two concurrent fsck --more
will lead to: "SQLite3 returned ErrorBusy while attempting to perform step."
and one or both will fail. This is a concurrent writers problem.
Database.Handle can now be given a CommitPolicy, making it easy to specify
transaction granularity.
Benchmarking the old git-annex incremental fsck that flips sticky bits
to the new that uses sqlite, running in a repo with 37000 annexed files,
both from cold cache:
old: 6m6.906s
new: 6m26.913s
This commit was sponsored by TasLUG.
Did not keep backwards compat for sticky bit records. An incremental fsck
that is already in progress will start over on upgrade to this version.
This is not yet ready for merging. The autobuilders need to have sqlite
installed.
Also, interrupting a fsck --incremental does not commit the database.
So, resuming with fsck --more restarts from beginning.
Memory: Constant during a fsck of tens of thousands of files.
(But, it does seem to buffer whole transation in memory, so
may really scale with number of files.)
CPU: ?
* sync: Use the ssh-options git config when doing git pull and push.
* remotedaemon: Use the ssh-options git config.
Note that the rename env var means that if a new git-annex calls an old one
for git-annex ssh, or a new calls an old, nothing much will go wrong;
just ssh caching won't happen.
Note that while the assistant detects changes made to remote names, I left
the commit message fixed rather than calculating it after every commit. It
doesn't seem worth the CPU to do the latter.
--deduplicate, --skip-duplicates, and --clean-duplicates still checksum the
file twice, the first time to determine if it's a duplicate. This cannot be
easily merged with the checksumming done to add the file, since the file
needs to be locked down before that second checksum is taken.
This reverts commit 0700fbc477.
This broke unit and test suite cleanup. The difference is that
dirContentsRecursive only returns files, but this needs to also operate on
directories.
I hope this doesn't impact speed much -- it does have to pull out a value
from Annex state every time it accesses the branch now.
The test case I dropped has never caught any problems that I can remember,
and would have been rather difficult to convert.
* init: Repository tuning parameters can now be passed when initializing a
repository for the first time. For details, see
http://git-annex.branchable.com/tuning/
* merge: Refuse to merge changes from a git-annex branch of a repo
that has been tuned in incompatable ways.
This is necessary for interop between inode caches created on unix and
windows. Which is more important than supporting inodecaches for large keys
with the wrong size, which are broken anyway.
There should be no slowdown from this change, except on Windows.
Avoid using fileSize which maxes out at just 2 gb on Windows.
Instead, use hFileSize, which doesn't have a bounded size.
Fixes support for files > 2 gb on Windows.
Note that the InodeCache code only needs to compare a file size,
so it doesn't matter it the file size wraps. So it has been
left as-is. This was necessary both to avoid invalidating existing inode
caches, and because the code passed FileStatus around and would have become
more expensive if it called getFileSize.
This commit was sponsored by Christian Dietrich.
* info: Can now display info about a given uuid.
* Added to remote/uuid info: Count of the number of keys present
on the remote, and their size. This is rather expensive to calculate,
so comes last and --fast will disable it.
* Git remote info now includes the date of the last sync with the remote.
Reverts 965e106f24
Unfortunately, this caused breakage on Windows, and possibly elsewhere,
because parentDir and takeDirectory do not behave the same when there is a
trailing directory separator.
I think this is the last problimatic setCurrentDirectory. I also audited
for extrnal commands that git-annex might run with cwd = foo, and did not
find any that were passed any FilePath that might be absolute.
parentDir is less safe than takeDirectory, especially when working
with relative FilePaths. It's really only useful in loops that
want to terminate at /
This commit was sponsored by Audric SCHILTKNECHT.
This allows the git repository to be moved while git-annex is running in
it, with fewer problems.
On Windows, this avoids some of the problems with the absurdly small
MAX_PATH of 260 bytes. In particular, git-annex repositories should
work in deeper/longer directory structures than before. See
http://git-annex.branchable.com/bugs/__34__git-annex:_direct:_1_failed__34___on_Windows/
There are several possible ways this change could break git-annex:
1. If it changes its working directory while it's running, that would
be Bad News. Good news everyone! git-annex never does so. It would also
break thread safety, so all such things were stomped out long ago.
2. parentDir "." -> "" which is not a valid path. I had to fix one
instace of this, and I should probably wipe all calls to parentDir out
of the git-annex code base; it was never a good idea.
3. Things like relPathDirToFile require absolute input paths,
and code assumes that the git repo path is absolute and passes it to it
as-is. In the case of relPathDirToFile, I converted it to not make
this assumption.
Currently, the test suite has 16 failures.
In the case where a remote of the bare repo has a fetch = configuration,
refs/remotes/origin/master will exist, and so the merge code path tried to
run in the bare repo.
