This does mean that it has to write out temp files containing updated
objects for the merge. So may use more disk space, and disk IO, but that
should generally win out over needing to launch N separate
git hash-object processes.
An unlocked present file does not have a pointer file in the worktree, so
info skipped counting it.
It may be that unused was also affected by the problem, but it seemed not
to be in my tests. I think because of the use of the associatedFilesFilter.
This fix slows down both info and unused a little bit, since they have to
query the contents of files from git, but only when handling unlocked files.
This fixes behavior in this situation:
l1 <- lockShared Nothing "lck"
l2 <- lockShared Nothing "lck"
dropLock l1
dropLock l2
Before, the lock was dropped upon the second dropLock call, but the fd
remained open, and would never be closed while the program was running.
Fixed by a rather round-about method, but it should work well enough.
It would have been simpler to open open the shared lock once, and not open
it again in the second call to lockShared. But, that's difficult to do
atomically.
This also affects Windows and PID locks, not just posix locks.
In the case of pid locks, multiple calls to waitLock within the same
process are allowed because the side lock is locked using a posix lock,
and so multiple exclusive locks can be taken in the same process. So,
this change fixes a similar problem with pid locks.
l1 <- waitLock (Seconds 1) "lck"
l2 <- waitLock (Seconds 1) "lck"
dropLock l1
dropLock l2
Here the l2 side lock fd remained open but not locked,
although the pid lock file was removed. After this change, the second
dropLock will close both fds to the side lock, and delete the pidlock.
* add, addurl, import, importfeed: When in a v6 repository on a crippled
filesystem, add files unlocked.
* annex.addunlocked: New configuration setting, makes files always be
added unlocked. (v6 only)
This is a mostly backwards compatable change. I broke backwards
compatability in the case where a filename starts with double-quote.
That seems likely to be very rare, and v6 unlocked files are a new feature
anyway, and fsck needs to fix missing associated file mappings anyway. So,
I decided that is good enough.
The encoding used is to just show the String when it contains a problem
character. While that adds some overhead to addAssociatedFile and
removeAssociatedFile, those are not called very often. This approach has
minimal decode overhead, because most filenames won't be encoded that way,
and it only has to look for the leading double-quote to skip the expensive
read. So, getAssociatedFiles remains fast.
I did consider using ByteString instead, but getting a FilePath converted
with all chars intact, even surrigates, is difficult, and it looks like
instance PersistField ByteString uses Text, which I don't trust for problem
encoded data. It would probably be slower too, and it would make the
database less easy to inspect manually.
Instead -J will behave as if it was built without concurrent-output support
in this situation. Ie, it will be mostly quiet, except when there's an
error.
Note that it's not a problem for a filename to contain invalid utf-8 when
in a utf-8 locale. That is handled ok by concurrent-output. It's only
displaying unicode characters in a non-unicode locale that doesn't work.
This lets readonly repos be used. If a repo is readonly, we can ignore the
keys database, because nothing that we can do will change the state of the
repo anyway.
That trailing slash is needed for legacy chunked mode, because it puts the
chunks in a subdir under the key. But, outside legacy chunked mode, it's BS
and it's amazing it worked at all with some webdav servers.
I needed BUILDEROPTIONS to allow passing flags to stack build, but it also
lets me move the -j1 out of the normal build path, and to debian/rules
which has the goal of having a reproducible build
The type checker should have noticed this, but the changes to mapM
that make it accept any Traversable hid the fact that it was not being
passed a list at all. Thus, what should have returned an empty list most
of the time instead returned [""] which was treated as the name of the
associated file, with disasterout consequences.
When I have time, I should add a test case checking what sync --content
drops. I should also consider replacing mapM with one re-specialized to
lists.
* Removed the webapp-secure build flag, rolling it into the webapp build
flag.
* Removed the quvi and tahoe build flags, which only adds aeson to
the core dependencies.
* Removed the feed build flag, which only adds feed to the core
dependencies.
Build flags have cost in both code complexity and also make Setup configure
have to work harder to find a usable set of build flags when some
dependencies are missing.
When Config.setConfig runs, it throws away the old Repo and loads a new
one. So, add an action to adjust the Repo so that -c settings will persist
across that.
The homomorphs are back, just encoded such that it doesn't crash in LANG=C
However, I noticed a bug in the old escaping; [pseudoSlash] was escaped the
same as ['/','/']. Fixed by using '%' to escape pseudoSlash. Which requires
doubling '%' to escape it, but that's already done in the escaping of
worktree filenames in a view, so is probably ok.
So, we need to look at both the file on disk to see if it's a annex link,
and the file in the index too. lookupFile doesn't look in the index if the file
is not present on disk.
Now available on mips, mipsel, but temporarily removed armel since build is
failing there.
If armel would just get caught up, I could remove the per-arch specs
entirely.
Maybe time to turn maint of this over to richih?
Decided it's too scary to make v6 unlocked files have 1 copy by default,
but that should be available to those who need it. This is consistent with
git-annex not dropping unused content without --force, etc.
* Added annex.thin setting, which makes unlocked files in v6 repositories
be hard linked to their content, instead of a copy. This saves disk
space but means any modification of an unlocked file will lose the local
(and possibly only) copy of the old version.
* Enable annex.thin by default on upgrade from direct mode to v6, since
direct mode made the same tradeoff.
* fix: Adjusts unlocked files as configured by annex.thin.
http://bugs.debian.org/807341
* Fix insecure temporary permissions when git-annex repair is used in
in a corrupted git repository.
Other calls to withTmpDir didn't leak any potentially private data,
but repair clones the git repository to a temp directory which is made
using the user's umask. Thus, it might expose a git repo that is
otherwise locked down.
* Fix potential denial of service attack when creating temp dirs.
Since withTmpDir used easily predictable temporary directory names,
an attacker could create foo.0, foo.1, etc and as long as it managed to
keep ahead of it, could prevent it from ever returning.
I'd rate this as a low utility DOS attack. Most attackers in a position
to do this could just fill up the disk /tmp is on to prevent anything
from writing temp files. And few parts of git-annex use withTmpDir
anyway, so DOS potential is quite low.
Examined all callers of withTmpDir and satisfied myself that
switching to mkdtmp and so getting a mode 700 temp dir wouldn't break any
of them.
Note that withTmpDirIn continues to not force temp dir to 700.
But it's only used for temp directories inside .git/annex/wherever/
so that is not a problem.
Also re-audited all other uses of temp files and dirs in git-annex.
Note that the implementation uses replaceFile, so that the actual
replacement of the work tree file is atomic. This seems a good property to
have!
It would be possible for unlock in v6 mode to be run on files that do not
have their content present. However, that would be a behavior change from
before, and I don't see any immediate need to support it, so I didn't
implement it.
Was not putting it inside the temp dir, but next to it!
This was just wrong, and it led to a longer filename that desired being
used, leading to some bug reports.
Note that this changes the default behavior of git add in a newly
initialized repository; it will add files to the annex.
Don't like that this could break workflows, but it's necessary in order for
any pointer files in the repo to be handled by git-annex.
Since all places where a repo is used in direct mode need to have git-annex
upgraded before the repo can safely be converted to v6, the upgrade needs
to be manual for now.
I suppose that at some point I'll want to drop all the direct mode support
code. At that point, will stop supporting v5, and will need to auto-upgrade
any remaining v5 repos. If possible, I'd like to carry the direct mode
support for say, a year or so, to give people plenty of time to upgrade and
avoid disruption.
importfeed just calls addurl functions, so inherits this from it.
Note that addurl still generates a temp file, and uses that key to download
the file. It just adds it to the work tree at the end when the file is small.
When core.sharedRepository is set, annex object files are not made mode
444, since that prevents a user other than the file owner from locking
them. Instead, a mode such as 664 is used in this case.
Had everything available, just didn't combine the progress meter with the
other places progress is sent to update it. (And to a remote repo already
did show progress.)
Most special remotes should already display progress meters with -J,
same as without it. One exception to this is the web, since it relies on
wget/curl progress display without -J. Still todo..
This was in the cabal file earlier, and was removed because it broke the
android cross build. Moving to the git-annex target of the Makefile
will make it be used for Debian packages etc but not android cross builds
or make fast or when users build with cabal.
replaceFile created a temp file, which was guaranteed to not overlap with
another temp file. However, makeAnnexLink then deleted that file, in
preparation for making the symlink in its place. This caused a race, since
some other replaceFile could create a temp file, using the same name!
I was able to reproduce the race easily running git-annex add -J10 in a
directory with 100 files (all with different contents). Some files would
get ingested into the annex, but their annex links would fail to be added.
There could be other situations where this same problem could occur.
Perhaps when the assistant is adding a file, if the user manually also ran
git-annex add. Perhaps in cases not involving adding a file.
The new replaceFile makes a temprary directory, which is guaranteed to be
unique, and doesn't make a temp file in there. makeAnnexLink can thus
create the symlink without problem and the race is avoided.
Audited all calls to replaceFile to make sure that the old behavior of
providing an empty temp file was not relied on.
The general problem of asking for a temp file and deleting it as part of
the process of using it could reach beyond replaceFile. Did some quick
audits and didn't find other cases of it. Probably only symlink creation
stuff would tend to make that mistake, mostly.
* Fix failure to build with aws-0.13.0.
* When built with aws-0.13.0, the S3 special remote can be used to create
google nearline buckets, by setting storageclass=NEARLINE.
Fixes a recent-ish build warning on about 64 bit vs non.
This is the method used by the disk-free-space library, and I tested it to
yield the same results on even 10 tb drives on OSX -- so it's getting 64
bit values.
Instead, only display transport error if the configlist output doesn't
include an annex.uuid line, even an empty one.
A recent change made git-annex init try to get all the remote uuids, and so
the transport error would be displayed by it. It was also displayed when
eg, copying files to a remote that had no uuid yet.
sync, merge, assistant: When git merge failed for a reason other than a
conflicted merge, such as a crippled filesystem not allowing particular
characters in filenames, git-annex would make a merge commit that could
omit such files or otherwise be bad. Fixed by aborting the whole merge
process when git merge fails for any reason other than a merge conflict.
Implemented with no additional overhead of compares etc.
This is safe to do for presence logs because of their locality of change;
a given repo's presence logs are only ever changed in that repo, or in a
repo that has just been actively changing the content of that repo.
So, we don't need to worry about a split-brain situation where there'd
be disagreement about the location of a key in a repo. And so, it's ok to
not update the timestamp when that's the only change that would be made
due to logging presence info.
/dev/null stderr; ssh is still able to display a password prompt
despite this
Show some messages so the user knows it's locking a remote, and
knows if that locking failed.
On Solaris, using f_bsize provided a value that is apparently much larger
than the real block size. The solaris docs for statvfs say
f_bsize is the "preferred" file system block size, and I guess the
filesystem prefers larger blocks, but uses smaller ones or something.
The docs also say that f_frsize is the "fundamental" block size.
Switched to using f_frsize on Linux and kFreeBSD too, since I guess
f_bsize could in theory vary the same way there too. Assuming that Solaris
is not violating the posix spec, I guess the linux man page for statvfs
is not as well written and I misunderstood it.
* When annex objects are received into git repositories, their checksums are
verified then too.
* To get the old, faster, behavior of not verifying checksums, set
annex.verify=false, or remote.<name>.annex-verify=false.
* setkey, rekey: These commands also now verify that the provided file
matches the key, unless annex.verify=false.
* reinject: Already verified content; this can now be disabled by
setting annex.verify=false.
recvkey and reinject already did verification, so removed now duplicate
code from them. fsck still does its own verification, which is ok since it
does not use getViaTmp, so verification doesn't happen twice when using fsck
--from.
Update install instructions.
Note that xmpp is disabled in the stack.yaml, because that needs C
libraries that would take extra work for the user to install.
xmpp is moving toward deprecation anyway.
Seems easy, but git ls-files can't list the right subset of files.
So, I wrote a whole new parser for git status output, and converted the
status command to use that.
There are a few other small behavior changes. The order changed. Unlocked
files show as T. In indirect mode, deleted files were not shown before, and
that's fixed. Regular files checked directly into git and modified
were not shown before, and are now.
I couldn't find a good way to make an *empty* index file (zero byte file
won't do), so I punted and just don't make index.lock when there's no index
yet. This means some other git process could race and write an index file
at the same time as the merge is ongoing, in theory. Only happens in new
repos though.
