Commit graph

1441 commits

Author SHA1 Message Date
Joey Hess
d5628a16b8
Merge branch 'bs' into sqlite-bs 2019-12-18 14:51:03 -04:00
Joey Hess
75c40279c1
use conversion functions from filepath-bytestring
Behavior should be the same, but I'd hope to eventually get rid of
most of Utility.FileSystemEncoding and this is a first step.
2019-12-18 13:42:43 -04:00
Joey Hess
322c542b5c
fix ByteString conversion on windows
the encode' and decode' functions on Windows should not apply the
filesystem encoding, which does not work there. Instead, convert to and
from UTF-8.

Also, avoid exporting encodeW8 and decodeW8. Both use the filesystem
encoding, so won't work as expected on windows.
2019-12-18 13:32:56 -04:00
Joey Hess
c19211774f
use filepath-bytestring for annex object manipulations
git-annex find is now RawFilePath end to end, no string conversions.
So is git-annex get when it does not need to get anything.
So this is a major milestone on optimisation.

Benchmarks indicate around 30% speedup in both commands.

Probably many other performance improvements. All or nearly all places
where a file is statted use RawFilePath now.
2019-12-11 15:25:07 -04:00
Joey Hess
a0168cd9a2
use RawFilePath getSymbolicLinkStatus for speed 2019-12-06 15:42:54 -04:00
Joey Hess
2f9a80d803
merging sqlite and bs branches
Since the sqlite branch uses blobs extensively, there are some
performance benefits, ByteStrings now get stored and retrieved w/o
conversion in some cases like in Database.Export.
2019-12-06 15:30:45 -04:00
Joey Hess
5f391179f1
use RawFilePath getFileStatus for speed
Only done on those calls to getFileStatus that had a RawFilePath, not a
FilePath. The others would probably be just as fast if converted to use
it with toRawFilePath, but I'm not 100% sure.

Note that genInodeCache' uses fromRawFilePath, but that value only gets
used on Windows, so on unix the thunk will never be evaluated.
2019-12-06 14:44:42 -04:00
Joey Hess
360942ba12
RawFilePath will need to support Windows too
Of course, readSymbolicLink always fails on Windows, but now it's ready
for other things that don't fail there.
2019-12-06 14:17:48 -04:00
Joey Hess
f39f018ee0
fix git ls-tree parser
File mode is octal not decimal. This broke in the conversion to
attoparsec.

(I've submitted the content of Utility.Attoparsec to the attoparsec
developers.)

Test suite passes 100% now.
2019-12-06 14:05:48 -04:00
Joey Hess
37d0f73e66
reword comment 2019-11-27 16:38:18 -04:00
Joey Hess
067aabdd48
wip RawFilePath 2x git-annex find speedup
Finally builds (oh the agoncy of making it build), but still very
unmergable, only Command.Find is included and lots of stuff is badly
hacked to make it compile.

Benchmarking vs master, this git-annex find is significantly faster!
Specifically:

	num files	old	new	speedup
	48500		4.77	3.73	28%
	12500		1.36	1.02	66%
	20		0.075	0.074	0% (so startup time is unchanged)

That's without really finishing the optimization. Things still to do:

* Eliminate all the fromRawFilePath, toRawFilePath, encodeBS,
  decodeBS conversions.
* Use versions of IO actions like getFileStatus that take a RawFilePath.
* Eliminate some Data.ByteString.Lazy.toStrict, which is a slow copy.
* Use ByteString for parsing git config to speed up startup.

It's likely several of those will speed up git-annex find further.
And other commands will certianly benefit even more.
2019-11-26 16:01:58 -04:00
Joey Hess
6a97ff6b3a
wip RawFilePath
Goal is to make git-annex faster by using ByteString for all the
worktree traversal. For now, this is focusing on Command.Find,
in order to benchmark how much it helps. (All other commands are
temporarily disabled)

Currently in a very bad unbuildable in-between state.
2019-11-25 16:18:19 -04:00
Joey Hess
1ff889e456
explict export lists
A small amount of dead code removed.

All of Utility/ done now.

This commit was sponsored by Brock Spratlen on Patreon.
2019-11-23 11:24:10 -04:00
Joey Hess
81d402216d cache the serialization of a Key
This will speed up the common case where a Key is deserialized from
disk, but is then serialized to build eg, the path to the annex object.

Previously attempted in 4536c93bb2
and reverted in 96aba8eff7.
The problems mentioned in the latter commit are addressed now:

Read/Show of KeyData is backwards-compatible with Read/Show of Key from before
this change, so Types.Distribution will keep working.

The Eq instance is fixed.

Also, Key has smart constructors, avoiding needing to remember to update
the cached serialization.

Used git-annex benchmark:
  find is 7% faster
  whereis is 3% faster
  get when all files are already present is 5% faster
Generally, the benchmarks are running 0.1 seconds faster per 2000 files,
on a ram disk in my laptop.
2019-11-22 17:49:16 -04:00
Joey Hess
1d0dbdf201
squelch tab warnings 2019-11-22 12:49:41 -04:00
Joey Hess
7263aafd2b
Merge branch 'master' into sqlite 2019-11-22 12:49:35 -04:00
Joey Hess
b82ab21468
missed an export 2019-11-22 12:35:57 -04:00
Joey Hess
a9888f6151
Windows: Fix handling of changes to time zone.
Used to work but was broken in version 7.20181031, specifically commit
5ab0f48ffb.

That this was not noticed over at least 1 daylight savings time zone
changes makes me wonder if the TSDelta stuff is still needed.
Perhaps the mtime on Windows no longer changes when the time zone is changed?

(cherry picked from commit 09ee6b0ccb)
2019-11-21 17:28:18 -04:00
Joey Hess
d4661959de
Merge branch 'master' into sqlite 2019-11-21 17:26:50 -04:00
Joey Hess
8ea5f3ff99
explict export lists
Eliminated some dead code. In other cases, exported a currently unused
function, since it was a logical part of the API.

Of course this improves the API documentation. It may also sometimes
let ghc optimize code better, since it can know a function is internal
to a module.

364 modules still to go, according to
git grep -E 'module [A-Za-z.]+ where'
2019-11-21 16:08:37 -04:00
Joey Hess
890330f0fe
make --json-error-messages capture url download errors
Convert Utility.Url to return Either String so the error message can be
displated in the annex monad and so captured.

(When curl is used, its errors are still not caught.)
2019-11-12 13:52:38 -04:00
Joey Hess
09ee6b0ccb
Windows: Fix handling of changes to time zone.
Used to work but was broken in version 7.20181031, specifically commit
5ab0f48ffb.

That this was not noticed over at least 1 daylight savings time zone
changes makes me wonder if the TSDelta stuff is still needed.
Perhaps the mtime on Windows no longer changes when the time zone is changed?
2019-11-06 14:36:49 -04:00
Joey Hess
89bdcffdfa
found a way to extract InodeCache from git index
This will allow a race-free database transition. It is somewhat hairy in
that it depends on an unspecified git output format.
2019-11-06 14:23:00 -04:00
Joey Hess
4940a135af
eliminate raw sql LIKE query 2019-10-30 15:19:52 -04:00
Joey Hess
94efc400e9
horrible impementation of isInodeKnown
The only good thing about it is it does not require a major version bump
to improve the database. That will need to happen at some point though.

Potentially very very slow in a large repository.

Ugly use of raw sql.
2019-10-23 14:37:29 -04:00
Joey Hess
eebf080b33
comment typo 2019-10-23 12:32:46 -04:00
Joey Hess
9a5d9019ba
Deal with pkexec changing to root's home directory when running a command.
Wow, that's not documented anywhere, and seems like a major gotcha in
pkexec.

Broke enable-tor.
2019-10-21 12:39:19 -04:00
Joey Hess
b90ddbc383
enable-tor: Use pkexec to run command as root when gksu and kdesu are not available.
gksu is no longer in debian, even stable

kdesu in debian is not installed in PATH any longer, though the executable
is still present under /usr/lib

pkexec is packagekit's replacement for those older commands.
2019-09-30 15:19:01 -04:00
Joey Hess
f2737a5fbe
enable-tor: Run kdesu with -c option. 2019-09-30 15:14:05 -04:00
Joey Hess
ab8a6a82e1
remove unused 2019-09-24 18:16:01 -04:00
Joey Hess
a4750fa537
move haddock block so haddock will build 2019-09-24 18:14:47 -04:00
Joey Hess
71f30d2f07
improve haddock 2019-09-24 18:10:34 -04:00
Joey Hess
bc1b9a2c0a
improved GitLFS api 2019-09-24 18:05:11 -04:00
Joey Hess
6ae0a44c64
git-lfs: Added support for http basic auth 2019-09-24 14:46:20 -04:00
Joey Hess
53fd746705
avoid some build warnings on windows 2019-09-12 14:11:19 -04:00
Joey Hess
9624fe4c37
improve comment 2019-09-01 12:33:19 -04:00
Joey Hess
1558e03014
Refuse to upgrade direct mode repositories when git is older than 2.22
That git fixed a memory leak that could cause an OOM during the upgrade.

Most git-annex builds have a new enough git already.
OSX git was upgraded with brew.

Linux i386ancient build's git was too old. Upgrading it to a fixed
git didn't work (due to the newer git not working with the old ssh,
https://bugs.chromium.org/p/git/issues/detail?id=7 )

Choices to deal with that were:

* Somehow make direct mode upgrade work with the old git, avoiding its
  OOM problem. One way would be to switch the repo to indirect mode
  first, and so upgrade to a repo with locked files. Not good when
  the filesystem does not support symlinks.
* backport the OOM fix from git 2.22
  (And do what about the version number so git-annex knows it's fixed?)
* backport openssh (and possibly more stuff)
* move the i386ancient build to at least Debian stretch (still backporting git)
  But this will make it no longer work with some of the ancient kernels it
  targets.

Of those, backporting the OOM fix seemed the best approach. Put "oomfix"
in the git version number to indicate it.

I have not automated building the git backport, so here's the patch I
used:

diff -ur orig/git-2.1.4/convert.c git-2.1.4/convert.c
--- orig/git-2.1.4/convert.c	2014-12-18 18:42:18.000000000 +0000
+++ git-2.1.4/convert.c	2019-08-29 20:05:04.371872338 +0100
@@ -404,7 +404,7 @@
 	if (start_async(&async))
 		return 0;	/* error was already reported */

-	if (strbuf_read(&nbuf, async.out, len) < 0) {
+	if (strbuf_read(&nbuf, async.out, 0) < 0) {
 		error("read from external filter %s failed", cmd);
 		ret = 0;
 	}
diff -ur orig/git-2.1.4/GIT-VERSION-GEN git-2.1.4/GIT-VERSION-GEN
--- orig/git-2.1.4/GIT-VERSION-GEN	2014-12-18 18:42:18.000000000 +0000
+++ git-2.1.4/GIT-VERSION-GEN	2019-08-29 20:06:39.132743228 +0100
@@ -1,7 +1,7 @@
 #!/bin/sh

 GVF=GIT-VERSION-FILE
-DEF_VER=v2.1.4
+DEF_VER=v2.1.4.oomfix

 LF='
 '
diff -ur orig/git-2.1.4/configure git-2.1.4/configure
--- orig/git-2.1.4/configure	2014-12-18 18:42:19.000000000 +0000
+++ git-2.1.4/configure	2019-08-29 20:27:45.896380015 +0100
@@ -580,8 +580,8 @@
 # Identity of this package.
 PACKAGE_NAME='git'
 PACKAGE_TARNAME='git'
-PACKAGE_VERSION='2.1.4'
-PACKAGE_STRING='git 2.1.4'
+PACKAGE_VERSION='2.1.4.oomfix'
+PACKAGE_STRING='git 2.1.4.oomfix'
 PACKAGE_BUGREPORT='git@vger.kernel.org'
 PACKAGE_URL=''

diff -ur orig/git-2.1.4/version git-2.1.4/version
--- orig/git-2.1.4/version	2014-12-18 18:42:19.000000000 +0000
+++ git-2.1.4/version	2019-08-29 20:06:17.572545210 +0100
@@ -1 +1 @@
-2.1.4
+2.1.4.oomfix
2019-08-29 15:24:41 -04:00
Joey Hess
69cefe8190
followup and display rsync exit status 2019-08-15 14:47:22 -04:00
Joey Hess
05d52f9699
fix display of http exceptions 2019-08-10 11:09:25 -04:00
Joey Hess
868942e19b
fix unused module import warnings when building on windows 2019-08-08 12:18:53 -04:00
Joey Hess
ee72fd2f7d
add exports useful if using this module to write a git-lfs server 2019-08-05 15:40:36 -04:00
Joey Hess
c527ae5887
Merge branch 'master' into git-lfs 2019-08-05 11:48:45 -04:00
Joey Hess
19defc7932
fix reversion
4af55c42bf reordered the exception
catching, preventing following ftp redirect
2019-08-04 14:32:06 -04:00
Joey Hess
4af55c42bf
factored out downloadConduit from download
useful when an API provides a Request to download
2019-08-04 12:31:54 -04:00
Joey Hess
5be0a35dae
implemented checkPresent for git-lfs 2019-08-03 12:21:28 -04:00
Joey Hess
f536a0b264
weaken comment
I'm seeing the github lfs server request an upload of an object that has
already been uploaded to it before. Probably because they offload
storage to S3 and so skipped the overhead of checking for an unncessary
upload.
2019-08-03 11:31:02 -04:00
Joey Hess
74e9e3ccf0
add to request headers, don't overwrite 2019-08-03 11:15:08 -04:00
Joey Hess
fc09a41ed1
storing objects in git-lfs is working
Still need to record the sha256 and size when they cannot be determined
by inspecting the key.
2019-08-02 13:56:55 -04:00
Joey Hess
6c1130a3bb
lfs endpoint discovery and caching in git-lfs special remote 2019-08-02 12:38:14 -04:00
Joey Hess
03a765909c
move IO code out
Let's keep this entirely pure.

git-annex has its own facilities for running a ssh command, that make it
respect various config settings, and cache connections, etc. So better
not to have the library run ssh itself.
2019-08-02 10:57:40 -04:00
Joey Hess
2533acc7a2
note about ssh hostname sanitization 2019-08-02 10:40:55 -04:00
Joey Hess
bd6c508334
finalizing lfs module
It may eventually move to its own package.
2019-08-01 14:04:56 -04:00
Joey Hess
018b5b8173
Support building with socks-0.6 and persistant-template-2.7
persistent-template now needs UndecidableInstances.

socks changed defaultSocksConf to take a SockAddr.
2019-07-30 12:50:48 -04:00
Joey Hess
426053cb6c
Corrected some license statements
In 40ecf58d4b I changed the license of code I
wrote from GPL to AGPL. But, two files containing code I wrote combined
with code by others were updated to say their license is AGPL, while in
fact part of it was (the code I wrote) but part remained under the original
license (the code written by others).

Remote/Ddar.hs is now changed entirely back to GPL 3.

Annex/DirHashes.hs stays AGPL, but I broke out Utility/MD5.hs with the code
not written by me, and corrected its license statement to GPL-2, which
is the actual version of the GPL included with the code in its original
distribution at http://www.cs.ox.ac.uk/people/ian.lynagh/md5/
2019-07-28 14:27:33 -04:00
Joey Hess
7fd650355e
merge from http-client-restricted
I made some improvements to its API after splitting it out of git-annex,
so merge those back in.

This is groundwork for removing the embedded copy of it and depending on
it.

Also moved the managerResponseTimeout disabling to Annex.Url as it's
git-annex specific.

This commit was sponsored by Ethan Aubin on Patreon.
2019-07-17 16:48:50 -04:00
Joey Hess
7234b1f9a7
small optimisation to file copying
Avoid statting file, just try to remove it.

Also a comment to explain why it tries to remove it, which was puzzling
me when I revisited this code until I saw that cp fails to overwrite a
mode 444 file, including perhaps one left by a previous interrupted cp.

This commit was sponsored by Fernando Jimenez on Patreon.
2019-07-17 14:22:21 -04:00
Joey Hess
21ff5e1e5a
CoW probing
Improved probing when CoW copies can be made between files on the same
drive. Now supports CoW between BTRFS subvolumes. And, falls back to rsync
instead of using cp when CoW won't work, eg copies between repos on the
same EXT4 filesystem.

Rather than trying cp --reflink=always for each file copied to a remote,
it's tried once and if it fails it falls back to using rsync thereafter
for the lifetime of the Remote object. That avoids overhead of calling cp
which while small, will add up over a large number of files.

This commit was sponsored by Boyd Stephen Smith Jr. on Patreon.
2019-07-17 14:19:08 -04:00
Joey Hess
0c6b7e288d
Add BLAKE2BP512 and BLAKE2BP512E backends
using a blake2 variant optimised for 4-way CPUs

This had been deferred because the Debian package of cryptonite, and
possibly other builds, was broken for blake2bp, but I've confirmed #892855
is fixed.

This commit was sponsored by Brett Eisenberg on Patreon.
2019-07-05 15:30:03 -04:00
Joey Hess
9a5ddda511
remove many old version ifdefs
Drop support for building with ghc older than 8.4.4, and with older
versions of serveral haskell libraries than will be included in Debian 10.

The only remaining version ifdefs in the entire code base are now a couple
for aws!

This commit should only be merged after the Debian 10 release.
And perhaps it will need to wait longer than that; it would make
backporting new versions of  git-annex to Debian 9 (stretch) which
has been actively happening as recently as this year.

This commit was sponsored by Ilya Shlyakhter.
2019-07-05 15:09:37 -04:00
Joey Hess
42c386fc47
add: Display progress meter when hashing files.
* add: Display progress meter when hashing files.
* add: Support --json-progress option.
2019-06-25 13:12:47 -04:00
Joey Hess
759fd9ea68
avoid url resume from 0
When downloading an url and the destination file exists but is empty,
avoid using http range to resume, since a range "bytes=0-" is an unusual
edge case that it's best to avoid relying on working.

This is known to fix a case where importfeed downloaded a partial feed from
such a server. Since importfeed uses withTmpFile, the destination always exists
empty, so it would particularly tickle such problem servers. Resuming from 0
is otherwise possible, but unlikely.
2019-06-20 12:26:17 -04:00
Joey Hess
fe49747fc8
add missing case
and fix name shadowing warning
2019-06-04 11:24:32 -04:00
Joey Hess
6136e299a2
add back support for following http to ftp redirects
Did not test build with http-client < 0.5 and while I tried to support
it, the ifdefed parts may needs some fixes.
2019-05-30 16:04:59 -04:00
Joey Hess
67c06f5121
add back support for ftp urls
Add back support for ftp urls, which was disabled as part of the fix for
security hole CVE-2018-10857 (except for configurations which enabled curl
and bypassed public IP address restrictions). Now it will work if allowed
by annex.security.allowed-ip-addresses.
2019-05-30 14:51:34 -04:00
Joey Hess
aa7710982b
avoid list lookup by parseToken
Minor optimisation to parsing of a preferred content expression.
2019-05-14 13:11:29 -04:00
Joey Hess
00e9e15c70
squelch build warning with old version of quickcheck 2019-05-03 11:02:12 -04:00
Joey Hess
2b52dbe905
fix build with older QuickCheck
The NonEmpty instance was moved out of QuickCheck and into a package
with more deps than I want to drag in, so I'm providing my own instance,
but with older QuickCheck, use theirs to avoid overlapping.
2019-03-22 10:07:16 -04:00
Joey Hess
40ecf58d4b
update licenses from GPL to AGPL
This does not change the overall license of the git-annex program, which
was already AGPL due to a number of sources files being AGPL already.

Legally speaking, I'm adding a new license under which these files are
now available; I already released their current contents under the GPL
license. Now they're dual licensed GPL and AGPL. However, I intend
for all my future changes to these files to only be released under the
AGPL license, and I won't be tracking the dual licensing status, so I'm
simply changing the license statement to say it's AGPL.

(In some cases, others wrote parts of the code of a file and released it
under the GPL; but in all cases I have contributed a significant portion
of the code in each file and it's that code that is getting the AGPL
license; the GPL license of other contributors allows combining with
AGPL code.)
2019-03-13 15:48:14 -04:00
Joey Hess
c0bd202147
fix failing test case
An empty list of [ContentIdenfier] serialized to the same thing
as a single ContentIdentifier "". Avoid this ambiguity by requiring the
list be non-empty.
2019-03-06 14:27:15 -04:00
Joey Hess
1ec9e1494c
use relatedTempate in viaTmp 2019-03-04 14:12:00 -04:00
Joey Hess
4603713b4e
avoid using htonl
It got removed from network-3.0.0.0 and nothing in the haskell ecosystem
currently provides it (which seems it ought to be fixed).

Tested new code on both little-endian and big-endian with:

ghci> hostAddressToTuple $ fromJust $ embeddedIpv4 (0,0,0,0,0,0xffff,0x7f00,1)
(127,0,0,1)
2019-02-19 12:17:20 -04:00
Joey Hess
f5f059e288
relocate gpg test framework temp dir to outside repo
The gitAnnexTmpOtherDir cleanup made it be deleted too early sometimes,
and so the test suite failed. Also there was a report of a similar
failure which likely had a similar cause and hopwfully this fixes that
too.
2019-01-21 14:16:00 -04:00
Joey Hess
e38b654096
Estimated time to completion display shortened from eg "1h1m1s" to "1h1m"
Because seconds accuracy over such a time is unlikely to be accurate.
Also, it was possible to get a ridiculous "1y1d1h1m1s" if stalled or
very slow.
2019-01-21 00:04:35 -04:00
Joey Hess
96aba8eff7
Revert "cache the serialization of a Key"
This reverts commit 4536c93bb2.

That broke Read/Show of a Key, and unfortunately Key is read in at least
one place; the GitAnnexDistribution data type.

It would be worth bringing this optimisation back, but it would need
either a custom Read/Show instance that preserves back-compat, or
wrapping Key in a data type that contains the serialization, or changing
how GitAnnexDistribution is serialized.

Also, the Eq instance would need to compare keys with and without a
cached seralization the same.
2019-01-16 16:21:59 -04:00
Joey Hess
0e44985210
remove duplicate import 2019-01-14 18:26:38 -04:00
Joey Hess
e0c4ac99b5
convert serializeKey' to strict ByteString
The builder produces a lazy ByteString, and L.toStrict has to copy it,
but needing to use the builder is no longer to common case; the
serialization will normally be cached already as a strict ByteString,
and this avoids keyFile' needing to use L.toStrict . serializeKey'
2019-01-14 17:03:46 -04:00
Joey Hess
5d98cba923
use ByteStrings when reading annex symlinks and pointers
Now there's a ByteString used all the way from disk to Key.

The main complication in this conversion was the use of fromInternalGitPath
in several places to munge things on Windows. The things that used that
were changed to parse the ByteString using either path separator.

Also some code that had read from files to a String lazily was changed
to read a minimal strict ByteString.
2019-01-14 15:37:08 -04:00
Joey Hess
fc21cccf1c
slight optimisation more 2019-01-11 19:56:31 -04:00
Joey Hess
16c798b5ef
switch MetaValue to ByteString and MetaField to Text
MetaField was already limited to alphanumerics, so it makes sense to use
Text for it.

Note that technically a UUID can contain invalid UTF-8, and so
remoteMetaDataPrefix's use of T.pack . fromUUID could replace non-UTF8
values with '?' or whatever. In practice, a UUID is usually also text,
I only kept open the possibility of it containing invalid UTF-8 to avoid
breaking parsing of strange UUIDs in git-annex branch files. So, I
decided to let this edge case slip by.

Have not updated the rest of the code base yet for this change, as the
change took 2.5 hours longer than I expected to get working properly.
2019-01-07 14:18:24 -04:00
Joey Hess
a80922a594
support for ByteStrings 2019-01-07 12:29:25 -04:00
Joey Hess
7d51b0c109
import Utility.FileSystemEncoding in Common 2019-01-03 11:37:02 -04:00
Joey Hess
f574d8af10
comment typo 2019-01-03 00:22:05 -04:00
Joey Hess
3ba6e9bb96
use attoparsec parser for String parsing, 10x speedup
This is not as efficient as using ByteStrings throughout, but converting
the String to ByteString is actually significantly faster than the old
parser.

    benchmarking parse/old
    time                 9.657 μs   (9.600 μs .. 9.732 μs)
                         1.000 R²   (0.999 R² .. 1.000 R²)
    mean                 9.703 μs   (9.645 μs .. 9.785 μs)
    std dev              231.6 ns   (161.5 ns .. 323.7 ns)
    variance introduced by outliers: 25% (moderately inflated)

    benchmarking parse/new
    time                 834.6 ns   (797.1 ns .. 886.9 ns)
                         0.987 R²   (0.976 R² .. 0.999 R²)
    mean                 816.4 ns   (802.7 ns .. 845.1 ns)
    std dev              62.39 ns   (37.66 ns .. 108.4 ns)
    variance introduced by outliers: 82% (severely inflated)

There is a small behavior change from the old parsePOSIXTime,
which accepted any amount of trailing whitespace after the timestamp.
That behavior was not documented, and it doesn't seem anything relied on it.
2019-01-02 13:28:44 -04:00
Joey Hess
3c74dcd4e1
attoparsec parser for POSIXTime
(Not yet used anywhere.)

Benchmarking

{-# LANGUAGE OverloadedStrings #-}

import Criterion.Main
import Utility.TimeStamp
import Data.Attoparsec.ByteString

main = defaultMain
	[ bgroup "parse"
		[ bench "new" $ whnf (parseOnly (parserPOSIXTime <* endOfInput)) "1431286201.113452s"
		, bench "old" $ whnf parsePOSIXTime "1431286201.113452s"
		]
	]

benchmarking parse/new
time                 643.6 ns   (640.2 ns .. 646.7 ns)
                     1.000 R²   (0.999 R² .. 1.000 R²)
mean                 645.3 ns   (642.1 ns .. 650.9 ns)
std dev              14.59 ns   (9.194 ns .. 22.07 ns)
variance introduced by outliers: 29% (moderately inflated)

benchmarking parse/old
time                 9.657 μs   (9.600 μs .. 9.732 μs)
                     1.000 R²   (0.999 R² .. 1.000 R²)
mean                 9.703 μs   (9.645 μs .. 9.785 μs)
std dev              231.6 ns   (161.5 ns .. 323.7 ns)
variance introduced by outliers: 25% (moderately inflated)

So old took 9703 ns to parse, and new 643 ns.
2019-01-02 12:48:53 -04:00
Joey Hess
ba2c0663f9
comments 2019-01-01 22:48:14 -04:00
Joey Hess
ec1b9da72f
avoid abusing from/toRawFilePath for non-FilePaths 2019-01-01 22:44:04 -04:00
Joey Hess
b3c69eaaf8
strict bytestring encoders and decoders
Only had lazy ones before.

Already sped up a few parts of the code.
2019-01-01 14:55:15 -04:00
Joey Hess
1b44426805
avoid conflicting definitions of Template type
When both modules are imported and then re-exported.
2018-12-30 15:03:31 -04:00
Joey Hess
5480b3a9af
fix bogus ghc 8.6.3 build warning
ghc warned that the guards did not cover all values of h, but they
clearly do, and when rewritten as a case statement the warning goes
away.

Probably a ghc bug, but I kind of prefer the case statement over the
guards anyway.
2018-12-30 14:43:27 -04:00
Joey Hess
14971414dc
Make test suite work better when the temp directory is on NFS.
Deleting directories is one of the great unsolved problems of CS, thanks to
abominations like NFS lock files and Windows and races with other processes
cleaning up after themselves in the background. The gpg test harness
sometimes failed to delete its temp directory on NFS. Avoid the problem
class by not deleting it at all, and putting it inside the tmp repo being
tested. The test suite's more robust (and/or nonsensical) workarounds for
deleting its test dir will thus be used, hopefully avoiding the problem
until an OS finds a new way to violate POSIX and the laws of nature.

Note that this means that the .gnupg directory will be on whatever
filesystem the test suite is being run on, which may be a lesser quality
filesystem than gpg is really expecting. Gpg does not seem to need to
write sockets etc to there so this seems ok. The only known problem is
that if the filesystem forces a directory mode like 777, gpg will warn
about unsafe home directory perms, but it still works.
2018-12-19 12:44:56 -04:00
Joey Hess
850d19d038
add dropFromEnd 2018-11-23 11:24:05 -04:00
Joey Hess
9127fe4821
add DebugLocks build flag
Using the method described in
https://www.fpcomplete.com/blog/2018/05/pinpointing-deadlocks-in-haskell
but my own code to implement it, and with callstacks added.

This work is supported by the NIH-funded NICEMAN (ReproNim TR&D3) project.
2018-11-19 15:02:43 -04:00
Joey Hess
ff9bd9620e
Fix resume of download of url when the whole file content is already actually downloaded
Don't much like that there's no way to distinguish between having the whole
content and having an old version of the file that's bigger, but of course
resuming a http transfer can always yield the wrong result if the file on
the http server is changing, and git-annex will detect that when it
verifies the downloaded content.

This work is supported by the NIH-funded NICEMAN (ReproNim TR&D3) project.
2018-11-12 16:08:47 -04:00
Joey Hess
051dfcb3be
Revert "fix comment"
This reverts commit bac7d34e71.

The comment was right; ARG_MAX is the total length of all arguments.
2018-11-06 17:26:20 -04:00
Joey Hess
bac7d34e71
fix comment 2018-11-06 11:42:31 -04:00
Joey Hess
5ad5d45d4c
make Arbitrary POSIXTime include decimal half the time 2018-10-31 16:27:55 -04:00
Joey Hess
2ca408dc33
Increase minimum QuickCheck version. 2018-10-31 15:53:22 -04:00
Joey Hess
f00b329e0c
remove unused import 2018-10-30 13:38:29 -04:00
Joey Hess
86df2a08fe
fix windows build 2018-10-30 11:09:45 -04:00
Joey Hess
5ab0f48ffb
high-res mtimes
Cache high-resolution mtimes for improved detection of modified files in v7
(and direct mode).

Including on Windows.

With back-compat support so old low-res mtimes won't break anything, and
so the new information also won't break old versions of git-annex.
2018-10-30 00:41:26 -04:00
Joey Hess
48af284872
fix parse of negative posix time
Should never happen, but..
2018-10-29 23:40:34 -04:00
Joey Hess
a8ad577d1d
fix parsing of timestamp w/o trailing 's'
Luckily, this did not affect any git-annex log files, since they all
include the trailing 's' for backwards compatability reasons.

But, if I later want to drop that, this is the first commit where
git-annex can be trusted to parse that right.

The misparse caused it to be off by up to 10 seconds.
2018-10-29 23:36:47 -04:00
Joey Hess
3d1b22dc8e
factor out another function 2018-10-29 23:33:56 -04:00
Joey Hess
2e9f128dea
moved module and relicensed 2018-10-29 23:13:36 -04:00
Joey Hess
5d97898a7c
touch files with high-resolution timestamp
Needs unix 2.7.2, but that was included in ghc 8.0.1 (and much older)
so not really a new dep.
2018-10-29 22:25:21 -04:00
Joey Hess
94b7968f1f
forgot to remove this when dropping support for old ghc 2018-10-29 22:01:06 -04:00
Joey Hess
595fb98473
add small delay to avoid problems on systems with low-resolution mtime
I've seen intermittent failures of the test suite with v6 for a long time,
it seems to have possibly gotten worse with the changes around v7. Or just
being unlucky; all tests failed today.

Seen on amd64 and i386 builders, repeatedly but intermittently:

	unused: FAIL (4.86s)
	Test.hs:928:
	git diff did not show changes to unlocked file

And I think other such failures, all involving v7/v6 mode tests.

I managed to reproduce the unused failure with --keep-failures,
and inside the repo, git diff was indeed not showing any changes for
the modified unlocked file.

The two stats will be the same other than mtime; the old and new files have
the same size and inode, since the test case writes to the file and then
overwrites it.

Indeed, notice the identical timestamps:

	builder@orca:~/gitbuilder/build/.t/tmprepo335$ echo 1 > foo; stat foo; echo 2 > foo; stat foo
	  File: foo
	  Size: 2         	Blocks: 8          IO Block: 4096   regular file
	Device: 801h/2049d	Inode: 3546179     Links: 1
	Access: (0644/-rw-r--r--)  Uid: ( 1000/ builder)   Gid: ( 1000/ builder)
	Access: 2018-10-29 22:14:10.894942036 +0000
	Modify: 2018-10-29 22:14:10.894942036 +0000
	Change: 2018-10-29 22:14:10.894942036 +0000
	 Birth: -
	  File: foo
	  Size: 2         	Blocks: 8          IO Block: 4096   regular file
	Device: 801h/2049d	Inode: 3546179     Links: 1
	Access: (0644/-rw-r--r--)  Uid: ( 1000/ builder)   Gid: ( 1000/ builder)
	Access: 2018-10-29 22:14:10.894942036 +0000
	Modify: 2018-10-29 22:14:10.898942036 +0000
	Change: 2018-10-29 22:14:10.898942036 +0000
	 Birth: -

I'm seeing this in Linux VMs; it doesn't happen on my laptop. I've also
not experienced the intermittent test suite failures on my laptop.

So, I hope that this small delay will avoid the problem.

Update: I didn't, indeed I then reproduced the same failure on my
laptop, so it must be due to something else. But keeping this change anyway
since not needing to worry about lowish-resolution mtime in the test suite seems
worthwhile.
2018-10-29 19:31:26 -04:00
Joey Hess
234842a347
v7
Install new git hooks in this version.

This does beg the question of what to do if git later gets eg a
post-smudge hook, that could run git-annex smudge --update. I think the
thing to do in that case would be to make git-annex smudge --update
install the new hooks. That way, as the user uses git-annex, the hook
would be created pretty quickly and without needing any extra syscalls
except for when git-annex smudge --update is called.

I considered doing something like that for installation of the
post-checkout and post-merge hooks, which would have avoided the need
for v7. But the only place it was cheap to do it would be in git-annex smudge
which could cheaply notice that smudge.log didn't exist yet and so know
the hooks needed to be installed. But since smudge used to populate pointer
files, it would be quite surprising if a single git checkout/merge failed
to update the work tree, and so that idea didn't work out.

The other reason for v7 is psychological -- users don't need to worry
about whether they might be running an old version of git-annex that
doesn't support their v7 repository very well. And bug reports about
"v6" have gotten a bit of a bad association in my head since they often
hit one of the known limitations and didn't realize it was experimental.

newtyped RepoVersion Int to avoid needing 2 comparisons in
versionSupportsUnlockedPointers etc. Also it's just nicer.

This commit was sponsored by John Pellman on Patreon.
2018-10-25 18:24:23 -04:00
Joey Hess
38d691a10f
removed the old Android app
Running git-annex linux builds in termux seems to work well enough that the
only reason to keep the Android app would be to support Android 4-5, which
the old Android app supported, and which I don't know if the termux method
works on (although I see no reason why it would not).
According to [1], Android 4-5 remains on around 29% of devices, down from
51% one year ago.

[1] https://www.statista.com/statistics/271774/share-of-android-platforms-on-mobile-devices-with-android-os/

This is a rather large commit, but mostly very straightfoward removal of
android ifdefs and patches and associated cruft.

Also, removed support for building with very old ghc < 8.0.1, and with
yesod < 1.4.3, and without concurrent-output, which were only being used
by the cross build.

Some documentation specific to the Android app (screenshots etc) needs
to be updated still.

This commit was sponsored by Brett Eisenberg on Patreon.
2018-10-13 01:41:11 -04:00
Joey Hess
45e09ea7f3
debug the full adjusted Request
So that the user-agent etc are included in the debug.
2018-10-04 13:45:27 -04:00
Joey Hess
303d10cee6
Improve display when git config download from a http remote fails.
The error message displayed used to only come from curl/wget and perhaps
was clearer than the one displayed now that http-client is used. In any
case, it does make sense to hide it because git-annex prints its own
warning message.

This commit was sponsored by Jake Vosloo on Patreon.
2018-10-03 12:31:09 -04:00
Joey Hess
502c5a4917
remove support for old http-client version
git-annex already bumped to a newer version for the http security fix.

This commit was sponsored by mo on Patreon.
2018-10-03 12:00:07 -04:00
Joey Hess
c88e8c8249
unify error display 2018-10-03 11:56:52 -04:00
Joey Hess
26a02cb386
display error when an invalid url is downloaded
download is documented as displaying an error when download fails, but
it didn't when the url was not valid at all. That leads to confusing
behavior.

Also, display the url with --debug
2018-09-25 13:38:20 -04:00
Joey Hess
cc82f81227
More FreeBSD build fixes.
Untested, on FreeBSD but enough to fix the listed build errors.

Seems that System.Posix.Files must have used to export this stuff and it
was split.

This commit was sponsored by Peter on Patreon.
2018-09-24 11:25:56 -04:00
Joey Hess
ceee7758a5
fix \ escaping 2018-09-22 11:33:08 -04:00
Joey Hess
d2c351f547
update windows NUL for ghc 8.6.1
This should also work with older ghc, since the path is a windows device
namespace path.
2018-09-22 11:31:55 -04:00
Joey Hess
2aae6e84af
Support newlines in filenames.
Work around git cat-file --batch's protocol not supporting newlines by
running git cat-file not batched and passing the filename as a
parameter.

Of course this is quite a lot less efficient, especially because it
currently runs it multiple times to query for different pieces of
information.

Also, it has subtly different behavior when the batch process was
started and then some changes were made, in which case the batch process
sees the old index but this workaround sees the current index. Since
that batch behavior is mostly a problem that affects the assistant and has
to be worked around in it, I think I can get away with this difference.

I don't know of any other problems with newlines in filenames, everything
else in git I can think of supports -z. And git-annex's json output
supports newlines in filenames so downstream parsers from git-annex will be ok.
git-annex commands that use --batch themselves don't support newlines
in input filenames; using --json --batch is currently a way around that
problem.

This commit was sponsored by Ewen McNeill on Patreon.
2018-09-20 13:45:44 -04:00
Yaroslav Halchenko
b976eb5353
BF(minor): missing space after "Unsupported url scheme" msg before the scheme 2018-09-18 18:19:20 -04:00
Joey Hess
b3c9c59d3d
--debug urls
When git-annex used wget and curl, --debug would show urls. So there can't
be any new security problem with doing so.

This commit was sponsored by John Pellman on Patreon.
2018-09-14 12:46:39 -04:00
Joey Hess
b18fb1e343
clean P2P protocol shutdown on EOF
Avoids "git-annex-shell: <stdin>: hGetChar: end of file"
being displayed by the test suite, due to the way it
runs git-annex-shell without using ssh.

git-annex-shell over ssh was not affected because git-annex hangs up the
ssh connection and so never sees the error message that git-annnex-shell
probably did emit.

This commit was sponsored by Ryan Newton on Patreon.
2018-09-13 10:46:37 -04:00
Joey Hess
872640549b
comment typo 2018-09-05 13:57:06 -04:00
Joey Hess
f4788f3853
clarify comment
haskell-mountpoints contains android specific code, but it's not used
when git-annex was built for linux and is running on android.
2018-09-05 11:22:27 -04:00
Joey Hess
55f8d90dee
remove Utlity.SRV, no longer used 2018-09-05 11:15:33 -04:00
Joey Hess
f54c72d2e1
Fix build on FreeBSD
This must have been broken for years..

This commit was sponsored by Jack Hill on Patreon.
2018-08-29 12:09:03 -04:00
Joey Hess
c565340adc
stop using external hash programs, since cryptonite is faster
In 2013, I wrote "Cryptohash benchmarks 90 to 101% faster than external
hashers". Re-benchmarking today, I found cryptonite's sha256 consistently
outperformed coreutils by 10% for large files. Tested 10 mb, 100 mb, 1 gb
files with both sha256 and sha512. And for smaller files, the external
process startup time swamps the hash time.

Perhaps cryptonite has improved. Or it could just do better on my
current CPU Intel(R) Pentium(R) CPU 4410Y @ 1.50GHz). Anyway, even if cryptonite
is slower in some situations, seems likely it would only be marginally slower;
it's got the same class of highly optimised C code under the hood as coreutils.
The main difference between the two sha256 implementations seems to be
how much of the inner loop they unroll..

This commit was sponsored by Henrik Riomar on Patreon.
2018-08-28 18:10:58 -04:00
Joey Hess
6a445dc086
support conditionally excluding queued files
Switched code to use a for loop to avoid a filterM that would have
doubled the memory used.

This commit was supported by the NSF-funded DataLad project.
2018-08-16 14:38:37 -04:00
Joey Hess
218c76b789
avoid unused imports warning on non-linux 2018-08-07 15:06:33 -04:00
Joey Hess
e1ab01f94d
Fix reversion in display of http 404 errors.
Switch to using http-client for large file downloads caused the reversion;
the code for displaying a 404 response was instead displaying the raw html
document, which is not useful.

This commit was sponsored by Ryan Newton on Patreon.
2018-07-31 12:15:26 -04:00
Joey Hess
50609da787
fix User-Agent reversion
Send User-Agent and any configured annex.http-headers when downloading with
http, fixes reversion introduced when switching to http-client.

This commit was sponsored by mo on Patreon.
2018-07-16 11:56:47 -04:00
Joey Hess
ac228fa723
don't import all of System.Posix.Files
This avoid a build problem when different versions of posix and
posixcompat are used. Does not normally happen as cabal prevents that,
but this is sometimes used with ghc --make which can get into that
situation.
2018-07-10 12:04:49 -04:00
Joey Hess
3dd7f450c1
fix p2p --pair
p2p --pair: Fix interception of the magic-wormhole pairing code, which
since 0.8.2 it has sent to stderr rather than stdout.

This is highly annoying because I had asked the magic wormhole developers
for a machine-readable way to get the data, and instead they changed how
the data was output, and didn't even mention this in my issue, or in the
changelog.

Seems this needs to be tested periodically to make sure it's still working.

This commit was sponsored by Ethan Aubin.
2018-07-04 15:14:03 -04:00
Joey Hess
3976b89116
fix license date
I wrote this this year
2018-06-22 10:25:53 -04:00
Joey Hess
22f49f216e
get android building the security fix
Had to update http-client and network, with follow-on dep changes.

This commit was sponsored by Brock Spratlen on Patreon.
2018-06-21 10:23:04 -04:00
Joey Hess
923578ad78
improve error message
This commit was sponsored by Jack Hill on Patreon.
2018-06-19 14:21:41 -04:00
Joey Hess
47cd8001bc
call base ManagerSetting's exception wrapper
This commit was sponsored by Henrik Riomar on Patreon.
2018-06-19 14:17:05 -04:00
Joey Hess
fc79f68404
support building on debian stable
Specifically, http-client-0.4.31

This commit was supported by the NSF-funded DataLad project.
2018-06-19 11:25:10 -04:00
Joey Hess
3c0a538335
allow ftp urls by default
They're no worse than http certianly. And, the backport of these
security fixes has to deal with wget, which supports http https and ftp
and has no way to turn off individual schemes, so this will make that
easier.
2018-06-18 15:37:17 -04:00
Joey Hess
cc08135e65
prevent using local http proxies per annex.security.allowed-http-addresses
A local http proxy would bypass the security configuration. So,
the security configuration has to be applied when choosing whether to
use the proxy.

While http rebinding attacks against the dns lookup of the proxy IP
address seem very unlikely, this implementation does prevent them, since
it resolves the IP address once, checks it, and then reconfigures
http-client's proxy using the resolved address.

This commit was sponsored by Ole-Morten Duesund on Patreon.
2018-06-18 13:32:20 -04:00
Joey Hess
b54b2cdc0e
prevent http connections to localhost and private ips by default
Security fix!

* git-annex will refuse to download content from http servers on
  localhost, or any private IP addresses, to prevent accidental
  exposure of internal data. This can be overridden with the
  annex.security.allowed-http-addresses setting.
* Since curl's interface does not have a way to prevent it from accessing
  localhost or private IP addresses, curl defaults to not being used
  for url downloads, even if annex.web-options enabled it before.
  Only when annex.security.allowed-http-addresses=all will curl be used.

Since S3 and WebDav use the Manager, the same policies apply to them too.

youtube-dl is not handled yet, and a http proxy configuration can bypass
these checks too. Those cases are still TBD.

This commit was sponsored by Jeff Goeke-Smith on Patreon.
2018-06-17 13:30:28 -04:00
Joey Hess
43bf219a3c
added makeAddressMatcher
Would be nice to add CIDR notation to this, but this is the minimal
thing needed for the security fix.

This commit was sponsored by Ewen McNeill on Patreon.
2018-06-17 13:29:15 -04:00
Joey Hess
014a3fef34
added isPrivateAddress and isLoopbackAddress
For use in a security boundary enforcement.

Based on https://en.wikipedia.org/wiki/Reserved_IP_addresses

Including supporting IPv4 addresses embedded in IPv6 addresses. Because
while RFC6052 3.1 says "Address translators MUST NOT translate packets
in which an address is composed of the Well-Known Prefix and a non-
global IPv4 address; they MUST drop these packets", I don't want to
trust that implementations get that right when enforcing a security
boundary.

This commit was sponsored by John Pellman on Patreon.
2018-06-17 13:28:25 -04:00
Joey Hess
40e8358284
add Utility.HttpManagerRestricted
This is a clean way to add IP address restrictions to http-client, and
any library using it.
See https://github.com/snoyberg/http-client/issues/354#issuecomment-397830259

Some code from http-client and http-client-tls was copied in and
modified. Credited its author accordingly, and used the same MIT license.

The restrictions don't apply to http proxies. If using http proxies is a
problem, http-client already has a way to disable them.
SOCKS support is not included. As far as I can tell, http-client-tls
does not support SOCKS by default, and so git-annex never has.

The additional dependencies are free; git-annex already transitively
depended on them via http-conduit.

This commit was sponsored by Eric Drechsel on Patreon.
2018-06-16 18:44:13 -04:00
Joey Hess
28720c795f
limit url downloads to whitelisted schemes
Security fix! Allowing any schemes, particularly file: and
possibly others like scp: allowed file exfiltration by anyone who had
write access to the git repository, since they could add an annexed file
using such an url, or using an url that redirected to such an url,
and wait for the victim to get it into their repository and send them a copy.

* Added annex.security.allowed-url-schemes setting, which defaults
  to only allowing http and https URLs. Note especially that file:/
  is no longer enabled by default.

* Removed annex.web-download-command, since its interface does not allow
  supporting annex.security.allowed-url-schemes across redirects.
  If you used this setting, you may want to instead use annex.web-options
  to pass options to curl.

With annex.web-download-command removed, nearly all url accesses in
git-annex are made via Utility.Url via http-client or curl. http-client
only supports http and https, so no problem there.
(Disabling one and not the other is not implemented.)

Used curl --proto to limit the allowed url schemes.

Note that this will cause git annex fsck --from web to mark files using
a disallowed url scheme as not being present in the web. That seems
acceptable; fsck --from web also does that when a web server is not available.

youtube-dl already disabled file: itself (probably for similar
reasons). The scheme check was also added to youtube-dl urls for
completeness, although that check won't catch any redirects it might
follow. But youtube-dl goes off and does its own thing with other
protocols anyway, so that's fine.

Special remotes that support other domain-specific url schemes are not
affected by this change. In the bittorrent remote, aria2c can still
download magnet: links. The download of the .torrent file is
otherwise now limited by annex.security.allowed-url-schemes.

This does not address any external special remotes that might download
an url themselves. Current thinking is all external special remotes will
need to be audited for this problem, although many of them will use
http libraries that only support http and not curl's menagarie.

The related problem of accessing private localhost and LAN urls is not
addressed by this commit.

This commit was sponsored by Brett Eisenberg on Patreon.
2018-06-16 11:57:50 -04:00
Joey Hess
caaedb2993
fix http-client gzip decompression bug
Prevent haskell http-client from decompressing gzip files, so downloads of
such files works the same as it used to with wget and curl.

Explicitly setting accept-encoding to "identity" is probably not needed,
but that's what wget sends (curl does not send the header), and since
http-client is trying to be excessively smart, it seems we need to set
hAcceptEncoding to something to prevent it from inserting its own,
and this seems better than some hack like "".

This commit was sponsored by Ole-Morten Duesund on Patreon.
2018-05-21 15:10:25 -04:00
Joey Hess
6a63920732
fix build 2018-05-21 11:00:23 -04:00
Joey Hess
5204e1dd9d
Workaround for bug in an old version of cryptonite that broke https downloads, by using curl for downloads when git-annex is built with it.
This commit was supported by the NSF-funded DataLad project.
2018-05-20 14:12:37 -04:00
Joey Hess
86958fda5d
fix build with old http-client 2018-05-10 00:22:23 -04:00
Joey Hess
db720f6a9c
Display error message when http download fails.
* Display error message when http download fails.

  There's nothing in the http-client library to nicely format a http
  exception, so in some cases it has to fall back to using show on it.
  Seems better than just saying "it failed" or only showing the http
  status code.

* Avoid forward retry when 0 bytes were received.

  forwardRetry was comparing Nothing to Just 0, and so thought there had
  been progress made when 0 bytes were received.

This commit was supported by the NSF-funded DataLad project.
2018-05-08 16:11:45 -04:00
Joey Hess
7dc28dc705
Support building with hinotify-0.3.10.
Kept backwards compat with old versions via a shim.

This commit was sponsored by mo on Patreon.
2018-05-08 14:43:06 -04:00