Added annex.skipunknown git config, that can be set to false to change the
behavior of commands like `git annex get foo*`, to not skip over files/dirs
that are not checked into git and are explicitly listed in the command
line.
Significant complexity was needed to handle git-annex add, which uses some
git ls-files calls, but needs to not use --error-unmatch because of course
the files are not known to git.
annex.skipunknown is planned to change to default to false in a
git-annex release in early 2022. There's a todo for that.
Since it was used on both worktree and .git/annex files, split into
multiple functions.
In passing, this also improves permissions of created directories in
.git/annex, using createAnnexDirectory on those.
git-annex find is now RawFilePath end to end, no string conversions.
So is git-annex get when it does not need to get anything.
So this is a major milestone on optimisation.
Benchmarks indicate around 30% speedup in both commands.
Probably many other performance improvements. All or nearly all places
where a file is statted use RawFilePath now.
Adds a dependency on filepath-bytestring, an as yet unreleased fork of
filepath that operates on RawFilePath.
Git.Repo also changed to use RawFilePath for the path to the repo.
This does eliminate some RawFilePath -> FilePath -> RawFilePath
conversions. And filepath-bytestring's </> is probably faster.
But I don't expect a major performance improvement from this.
This is mostly groundwork for making Annex.Location use RawFilePath,
which will allow for a conversion-free pipleline.
Finally builds (oh the agoncy of making it build), but still very
unmergable, only Command.Find is included and lots of stuff is badly
hacked to make it compile.
Benchmarking vs master, this git-annex find is significantly faster!
Specifically:
num files old new speedup
48500 4.77 3.73 28%
12500 1.36 1.02 66%
20 0.075 0.074 0% (so startup time is unchanged)
That's without really finishing the optimization. Things still to do:
* Eliminate all the fromRawFilePath, toRawFilePath, encodeBS,
decodeBS conversions.
* Use versions of IO actions like getFileStatus that take a RawFilePath.
* Eliminate some Data.ByteString.Lazy.toStrict, which is a slow copy.
* Use ByteString for parsing git config to speed up startup.
It's likely several of those will speed up git-annex find further.
And other commands will certianly benefit even more.
This does not change the overall license of the git-annex program, which
was already AGPL due to a number of sources files being AGPL already.
Legally speaking, I'm adding a new license under which these files are
now available; I already released their current contents under the GPL
license. Now they're dual licensed GPL and AGPL. However, I intend
for all my future changes to these files to only be released under the
AGPL license, and I won't be tracking the dual licensing status, so I'm
simply changing the license statement to say it's AGPL.
(In some cases, others wrote parts of the code of a file and released it
under the GPL; but in all cases I have contributed a significant portion
of the code in each file and it's that code that is getting the AGPL
license; the GPL license of other contributors allows combining with
AGPL code.)
This was badly named, it's a not a blob necessarily, but anything that a
tree can refer to.
Also removed the Show instance which was used for serialization to git
format, instead use fmtTreeItemType.
This commit was supported by the NSF-funded DataLad project.
Needs ghc 7.6.1, so minimum base version increased slightly. All builds
are well above this version of ghc, and debian oldstable is as well.
Code that could use lambdacase can be found by running:
git grep -B 1 'case ' | less
and searching in less for "<-"
This commit was sponsored by andrea rota.
* Added annex.resolvemerge configuration, which can be set to false to
disable the usual automatic merge conflict resolution done by git-annex
sync and the assistant.
* sync: Added --no-resolvemerge option.
Note that disabling merge conflict resolution is probably not a good idea
in a direct mode repo or adjusted branch. Since updates to both are done
outside the usual work tree, if it fails the tree is not left in a
conflicted state, and it would be hard to manually resolve the conflict.
Still, made annex.resolvemerge be supported in those cases for consistency.
This commit was sponsored by Riku Voipio.
git 2.8.1 (or perhaps 2.9.0) is going to prevent git merge from merging in
unrelated branches. Since the webapp's pairing etc features often combine
together repositories with unrelated histories, work around this behavior
change by setting GIT_MERGE_ALLOW_UNRELATED_HISTORIES when the assistant
merges.
Note though that this is not done for git annex sync's merges, so
it will follow git's default or configured behavior.
When annex.thin is set, adding an object will add the execute bits to the
work tree file, and this does mean that the annex object file ends up
executable.
This doesn't add any complexity that wasn't already present, because git
annex add of an executable file has always ingested it so that the annex
object ends up executable.
But, since an annex object file can be executable or not, when populating
an unlocked file from one, the executable bit is always added or removed
to match the mode of the pointer file.
This is how direct mode does it too, and somehow, for reasons that
currently escape me, this makes git merge not care if it's run with an
empty work tree.
Fixes several bugs with updates of pointer files. When eg, running
git annex drop --from localremote
it was updating the pointer file in the local repository, not the remote.
Also, fixes drop ../foo when run in a subdir, and probably lots of other
problems. Test suite drops from ~30 to 11 failures now.
TopFilePath is used to force thinking about what the filepath is relative
to.
The data stored in the sqlite db is still just a plain string, and
TopFilePath is a newtype, so there's no overhead involved in using it in
DataBase.Keys.
Else, queued file stages won't have reached the index, and it won't find
everthing.
This evidently fixes a reversion in my work today, although I don't see how
I broke it. It didn't use to flush the queue first, before, and worked
somehow.
Test suite for v5 is back to 100% green now.
The smudge filter does need to be run, because if the key is in the local
annex already (due to renaming, or a copy of a file added, or a new file
added and its content has already arrived), git merge smudges the file and
this should provide its content.
This does probably mean that in merge conflict resolution, git smudges the
existing file, re-copying all its content to it, and then the file is
deleted. So, not efficient.
This is a behavior change for merge conflicts between locked files
that both pointed to the same key, in different ways.
Before, the conflict was resolved, but the file was renamed to .variant.
This was unnecessary, because there was only one variant.
Of course, this also handles conflicts between unlocked and locked, or even
two unlocked files with different pointer contents.
Several tricky parts:
* When the conflict is just between the same key being locked and unlocked,
the unlocked version wins, and the file is not renamed in this case.
* Need to update associated file map when conflict resolution renames
an unlocked file.
* git merge runs the smudge filter on the conflicting file, and actually
overwrites the file with the same content it had before, and so
invalidates its inode cache. This makes it difficult to know when it's
safe to remove such files as conflict cruft, without going so far as to
compare their entire contents.
Dealt with this by preventing the smudge filter from populating the file
when a merge is run. However, that also prevents the smudge filter being
run for non-conflicting files, so eg moving a file won't put its new
content into place.
* Ideally, if a merge or a merge conflict resolution renames an unlocked
file, the file in the work tree can just be moved, rather than copying
the content to a new worktree file.
This is attempted to be done in merge conflict resolution, but
due to git merge's behavior of running smudge filters, what actually
seems to happen is the old worktree file with the content is deleted and
rewritten as a pointer file, so doesn't get reused.
So, this is probably not as efficient as it optimally could be.
If that becomes a problem, could look into running the merge in a separate
worktree and updating the real worktree more efficiently, similarly to the
direct mode merge. However, the direct mode merge had a lot of bugs, and
I'd rather not use that more error-prone method unless really needed.
Backend.lookupFile is changed to always fall back to catKey when
operating on a file that's not a symlink.
catKey is changed to understand pointer files, as well as annex symlinks.
Before, catKey needed a file mode witness, to be sure it was looking at a
symlink. That was complicated stuff. Now, it doesn't actually care if a
file in git is a symlink or not; in either case asking git for the content
of the file will get the pointer to the key.
This does mean that git-annex will treat a link
foo -> WORM--bar as a git-annex file, and also treats
a regular file containing annex/objects/WORM--bar as a git-annex file.
Calling catKey could make git-annex commands need to do more work than
before. This would especially be the case if a repo contained many regular
files, and only a few annexed files, as now git-annex will need to ask
git about the contents of the regular files.
sync, merge, assistant: When git merge failed for a reason other than a
conflicted merge, such as a crippled filesystem not allowing particular
characters in filenames, git-annex would make a merge commit that could
omit such files or otherwise be bad. Fixed by aborting the whole merge
process when git merge fails for any reason other than a merge conflict.
This removes a bit of complexity, and should make things faster
(avoids tokenizing Params string), and probably involve less garbage
collection.
In a few places, it was useful to use Params to avoid needing a list,
but that is easily avoided.
Problems noticed while doing this conversion:
* Some uses of Params "oneword" which was entirely unnecessary
overhead.
* A few places that built up a list of parameters with ++
and then used Params to split it!
Test suite passes.
* init: Repository tuning parameters can now be passed when initializing a
repository for the first time. For details, see
http://git-annex.branchable.com/tuning/
* merge: Refuse to merge changes from a git-annex branch of a repo
that has been tuned in incompatable ways.
I think this is a git behavior change, but have not checked to be sure.
Conflict cruft used to look like $foo~HEAD, but now just $foo is left
behind as conflict cruft.
With test case.
When one side is an annexed symlink, and the other side is a non-annexed symlink.
In this case, git-merge does not replace the annexed symlink in the work
tree with the non-annexed symlink, which is different from it's handling of
conflicts between annexed symlinks and regular files or directories.
So, while git-annex generated the correct merge commit, the work tree
didn't get updated to reflect it.
See comments on bug for additional analysis.
Did not add this to the test suite yet; just unloaded a truckload of firewood
and am feeling lazy.
This commit was sponsored by Adam Spiers.
Support users who have set commit.gpgsign, by disabling gpg signatures for
git-annex branch commits and commits made by the assistant.
The thinking here is that a user sets commit.gpgsign intending the commits
that they manually initiate to be gpg signed. But not commits made in the
background, whether by a deamon or implicitly to the git-annex branch.
gpg signing those would be at best a waste of CPU and at worst would fail,
or flood the user with gpg passphrase prompts, or put their signature on
changes they did not directly do.
See Debian bug #753720.
Also makes all commits done by git-annex go through a few central control
points, to make such changes easier in future.
Also disables commit.gpgsign in the test suite.
This commit was sponsored by Antoine Boegli.
It was possible for a interrupted sync or merge in direct mode to
leave the work tree out of sync with the last recorded commit.
This would result in the next commit seeing files missing from the work
tree, and committing their removal.
Now, a direct mode merge happens not only in a throwaway work tree, but using
a temporary index file, and without any commits or index changes
being made until the real work tree has been updated. If the merge is
interrupted, the work tree may have some updated files, but worst case a
commit will redundantly commit changes that come from the merge.
This commit was sponsored by Tony Cantor.
This is a new feature, it was not handled before, since it's a bit of an
edge case. However, it can be handled exactly the same as a file/dir
conflict, just leave the non-annexed item alone.
While implementing this, the core resolveMerge' function got a lot simpler
and clearer. Note especially that where before there was an asymetric call to
stagefromdirectmergedir, now graftin is called symmetrically in both cases.
And, in order to add that `graftin us`, the current branch needed to be
known (if there is no current branch, there cannot be a merge conflict).
This led to some cleanups of how autoMergeFrom behaved when there is no
current branch.
This commit was sponsored by Philippe Gauthier.
