Commit graph

635 commits

Author SHA1 Message Date
Joey Hess
24800b1bf1 Only look at reflogs for relevant branches, not for git-annex branches
This speeds it up quite a bit.. May still be too slow in large repos.
2015-07-07 17:36:30 -04:00
Joey Hess
b11d2f5a8a unused: --used-refspec can now be configured to look at refs in the reflog. This provides a way to not consider old versions of files to be unused after they have reached a specified age, when the old refs in the reflog expire.
May be slow.
2015-07-07 17:13:50 -04:00
Joey Hess
f7dc20595e refactor ls-tree params
All in one place to avoid bugs like 174da80ddc
2015-07-06 14:21:43 -04:00
Joey Hess
174da80ddc bugfix: Pass --full-tree when using git ls-files to get a list of files on the git-annex branch, so it works when run in a subdirectory. This bug affected git-annex unused, and potentially also transitions running code and other things. 2015-07-06 14:09:54 -04:00
Joey Hess
adba0595bd use bloom filter in second pass of sync --all --content
This is needed because when preferred content matches on files,
the second pass would otherwise want to drop all keys. Using a bloom filter
avoids this, and in the case of a false positive, a key will be left
undropped that preferred content would allow dropping. Chances of that
happening are a mere 1 in 1 million.
2015-06-16 18:50:13 -04:00
Joey Hess
a0a8127956 instance Hashable Key for bloomfilter 2015-06-16 18:37:41 -04:00
Joey Hess
8b74aec3ea Increased the default annex.bloomaccuracy from 1000 to 10000000
This makes git annex unused use around 48 mb more memory than it did before,
but the massive increase in accuracy makes this worthwhile for all but the
smallest systems.

Also, I want to use the bloom filter for sync --all --content, to avoid
dropping files that the preferred content doesn't want, and 1/1000
false positives would be far too many in that use case, even if it were
acceptable for unused.

Actual memory use numbers:

1000: 21.06user 3.42system 0:26.40elapsed 92%CPU (0avgtext+0avgdata 501552maxresident)k
1000000: 21.41user 3.55system 0:26.84elapsed 93%CPU (0avgtext+0avgdata 549496maxresident)k
10000000: 21.84user 3.52system 0:27.89elapsed 90%CPU (0avgtext+0avgdata 549920maxresident)k

Based on these numbers, 10 million seemed a better pick than 1 million.
2015-06-16 18:12:00 -04:00
Joey Hess
8c46ea22c2 Added new "anything" preferred content expression, which matches all versions of all files. 2015-06-16 17:03:34 -04:00
Joey Hess
0a998032ed Fix bug that prevented enumerating locally present objects in repos tuned with annex.tune.objecthash1=true
Need to walk 1 level of subdirs less in this case.

The git-annex branch traversal code didn't have a similar bug.
2015-06-11 15:15:05 -04:00
Joey Hess
de3bd11a2c import --clean-duplicates: Fix bug that didn't count local or trusted repo's copy of a file as one of the necessary copies to allow removing it from the import location. 2015-06-03 13:15:38 -04:00
Joey Hess
d28e8fbfd5 get --incomplete: New option to resume any interrupted downloads. 2015-06-02 14:20:38 -04:00
Joey Hess
eb33569f9d remove Params constructor from Utility.SafeCommand
This removes a bit of complexity, and should make things faster
(avoids tokenizing Params string), and probably involve less garbage
collection.

In a few places, it was useful to use Params to avoid needing a list,
but that is easily avoided.

Problems noticed while doing this conversion:

	* Some uses of Params "oneword" which was entirely unnecessary
	  overhead.
	* A few places that built up a list of parameters with ++
	  and then used Params to split it!

Test suite passes.
2015-06-01 13:52:23 -04:00
Joey Hess
a6d54e49a0 sync, remotedaemon: Pass configured ssh-options even when annex.sshcaching is disabled. 2015-05-30 22:01:52 -04:00
Joey Hess
83b262f1b6 fix windows build 2015-05-22 13:54:54 -04:00
Joey Hess
167539a354 better memoize core.sharedrepository handling
It was memoized, but that was not used consistently. Move it to
Types.GitConfig so it will auto-memoize.
2015-05-19 15:04:24 -04:00
Joey Hess
b47c9fd587 honor core.sharedRepository settings in lockContent
The content file may not be owned by the user running git-annex, in which
case, setting the owner write bit was not enough to let lockContent
act on the file. However, with some core.sharedRepository configs, the file
should be writable by the user's group. So, the thing to do is to call
thawContent on it.
2015-05-19 14:53:19 -04:00
Joey Hess
f4e2093760 fix inAnnexSafe result for direct file that is being dropped
It was returning Just False in this situation, which differed from indirect
mode behavior. I don't think this led to any actual problems; things that
checked if the file being dropped was present just failed to fail, and
instead reported it wasn't present, possibly incorrectly.

Hmm, it's possible that this could have made git annex fsck --from remote
update the location log wrongly, if a remote was in direct mode, and was in
the middle of trying to drop a key, and the drop later failed.
2015-05-19 14:26:07 -04:00
Joey Hess
1312e721ed convert lockContent to use new LockPools
Also cleaned up the code, avoiding creating a lock file if we're going to
open it for create later anyway.

And, if there's an exception while preparing to lock the file, but not at
the point of actually taking the lock, throw an exception, instead of
silently not locking and pretending to succeed.

And, on Windows, always use lock file, even if the repo somehow got into
indirect mode (maybe with cygwin git..)
2015-05-19 14:12:23 -04:00
Joey Hess
ecb0d5c087 use lock pools throughout git-annex
The one exception is in Utility.Daemon. As long as a process only
daemonizes once, which seems reasonable, and as long as it avoids calling
checkDaemon once it's already running as a daemon, the fcntl locking
gotchas won't be a problem there.

Annex.LockFile has it's own separate lock pool layer, which has been
renamed to LockCache. This is a persistent cache of locks that persist
until closed.

This is not quite done; lockContent stil needs to be converted.
2015-05-19 14:09:52 -04:00
Joey Hess
7ebf234616 Stale transfer lock and info files will be cleaned up automatically when get/unused/info commands are run.
Deleting lock files is tricky, tricky stuff. I think I got it right!
2015-05-12 20:11:23 -04:00
Joey Hess
7299bbb639 don't clean up transfer lock file when retrying transfer
This affected callers that used forwardRetry; if the 1st attempt failed it
would clean up the transfer lock before retrying.
2015-05-12 19:43:24 -04:00
Joey Hess
8c2dd7d8ee Fix an unlikely race that could result in two transfers of the same key running at once.
As discussed in bug report.
2015-05-12 19:39:28 -04:00
Joey Hess
e25ecab7dd convert to using Utility.Lockfile for transfer lock files
Should be no behavior changes, just simplified code.

The only actual difference is it doesn't truncate the lock file.
I think that was a holdover from when transfer info was written to the lock
file.
2015-05-12 19:36:16 -04:00
Joey Hess
61ccf95004 Avoid accumulating transfer failure log files unless the assistant is being used.
Only the assistant uses these, and only the assistant cleans them up, so
make only git annex transferkeys write them,

There is one behavior change from this. If glacier is being used, and a
manual git annex get --from glacier fails because the file isn't available
yet, the assistant will no longer later see that failed transfer file and
retry the get. Hope no-one depended on that old behavior.
2015-05-12 15:53:38 -04:00
Joey Hess
a812d598ef Take space that will be used by running downloads into account when checking annex.diskreserve. 2015-05-12 15:20:22 -04:00
Joey Hess
e27b97d364 Merge branch 'master' into concurrentprogress
Conflicts:
	Command/Fsck.hs
	Messages.hs
	Remote/Directory.hs
	Remote/Git.hs
	Remote/Helper/Special.hs
	Types/Remote.hs
	debian/changelog
	git-annex.cabal
2015-05-12 13:23:22 -04:00
Joey Hess
64a4553e0b rename traverse to walk since Data.Traversable is imported by default in ghc 7.10 2015-05-10 16:43:09 -04:00
Joey Hess
08308dc9b3 fix build warning with ghc 7.10 2015-05-10 15:28:13 -04:00
Joey Hess
9f3e51dd51 move nubbing into function whose algo needs a nubbed list 2015-04-30 14:11:59 -04:00
Joey Hess
38c458b407 refactor 2015-04-30 14:02:56 -04:00
Joey Hess
5948c148fb Make repo init more robust.
The setDifferences that got added to initialize turns out to make a git
commit, and before ensureCommit has been used. Thus, repo init can fail
when the system has a broken hostname etc.

Move the ensureCommit to the very first thing to avoid this kind of breakage.
2015-04-20 14:01:41 -04:00
Joey Hess
3a078ab357 When a key's size is unknown, still check the annex.diskreserve, and avoid getting content if the disk is too full.
We can't check if there's enough disk space to download the content,
but we *can* check if there's certainly not enough!
2015-04-17 21:29:15 -04:00
Joey Hess
86a2f9dc4d Merge branch 'master' into concurrentprogress
Conflicts:
	debian/changelog
2015-04-14 15:35:15 -04:00
Joey Hess
2b79e6fe08 a few hlints 2015-04-11 00:10:34 -04:00
Joey Hess
9971c82ead refactor 2015-04-10 17:53:58 -04:00
Joey Hess
8077ccbd54 get, move, copy, mirror: Concurrent downloads and uploads are now supported!
This works, and seems fairly robust. Clean get of 20 files at -J3. At -J10,
there are some messages about ssh multiplexing, probably due to a race
spinning up the ssh connection cacher. But, it manages to get all the files
ok regardless.

The progress bars are a scrambled mess though, due to bugs in
ascii-progress, which I've already filed. Particularly this one:
https://github.com/yamadapc/haskell-ascii-progress/issues/8
2015-04-10 17:08:07 -04:00
Joey Hess
0880c8319e simplify and make more atomic 2015-04-10 15:16:17 -04:00
Joey Hess
ce0a82f493 contentlocationn: New plumbing command. 2015-04-09 15:34:47 -04:00
Joey Hess
b99b8d5d4c followup to bug I cannot reproduce, and analysis based presumptive fix 2015-04-09 14:03:44 -04:00
Joey Hess
42e46a8701 avoid using --literal-pathspecs with git older than 1.8.1 which added it
Windows is still building with an older git.
2015-04-06 13:46:11 -04:00
Joey Hess
1d57f142f1 Merge branch 'concurrentprogress' 2015-04-04 15:01:00 -04:00
Joey Hess
2343f99c85 well along the way to fully quiet --quiet
Came up with a generic way to filter out progress messages while keeping
errors, for commands that use stderr for both.

--json mode will disable command outputs too.
2015-04-04 14:34:03 -04:00
Joey Hess
ff2eeaf054 avoid progress bar for url download with --quiet 2015-04-03 20:38:56 -04:00
Joey Hess
bd110516c0 init: Improve fifo test to detect NFS systems that support fifos but not well enough for sshcaching.
ssh tries to hard link a fifo, and if not, complains:

muxserver_listen: link mux listener .git/annex/ssh/SHARD1@iabak.archiveteam.org.QK8zOCbtNebI7q54 => .git/annex/ssh/SHARD1@iabak.archiveteam.org: Operation not permitted
2015-04-03 14:57:10 -04:00
Joey Hess
0a6933771d cleanup 2015-03-30 19:55:35 -04:00
Joey Hess
15d45186cc use --literal-pathspecs globally, as a better way to avoid globbing
This might be overkill; I only know I need it in ls-files, but other git
commands can also do their own globbing, it turns out, and I am pretty sure
I never want them too when git-annex is using them as plumbing.

Test suite still passes and it looks ok.
2015-03-30 19:44:13 -04:00
Joey Hess
5be536e523 Fix bug introduced in the last release that broke git-annex sync when git-annex was installed from the standalone tarball.
This was introduced by commit 450ee53ab6

However, the same problem could affect other calls to programPath,
specifically some on the assistant. So, I fixed it at a deeper level.
2015-03-27 12:55:18 -04:00
Joey Hess
3af4691978 Improve error message when --in @date is used and there is no reflog for the git-annex branch. 2015-03-26 11:15:15 -04:00
Joey Hess
798da6cf2e Added a post-update-annex hook, which is run after the git-annex branch is updated. Needed for git update-server-info.
See https://github.com/datalad/datalad/issues/1#issuecomment-84094406
2015-03-20 14:52:58 -04:00
Joey Hess
cf903d5a3c fixup annex link target calculation when submodules are used in filesystems not supporting symlinks 2015-03-04 16:08:41 -04:00