Switch to Data.Map.Strict everywhere that used it.
There are still lots of lazy maps in git-annex. I think switching these
is safe. The risk is that there might be a map that is used in a way
that relies on the values not being evaluated to WHNF, and switching to
strict might result in bad performance or memory use. So, I have not
switched everything.
* For url downloads, git-annex now defaults to using a http library,
rather than wget or curl. But, if annex.web-options is set, it will
use curl. To use the .netrc file, run:
git config annex.web-options --netrc
* git-annex no longer uses wget (and wget is no longer shipped with
git-annex builds).
Note that curl is always run in silent mode, since the new API for
download has a MeterUpdate and doesn't make way for curl progress
output. It might be worth writing a parser for curl's progress output
to update the meter when using it, but I didn't bother with this edge
case for now.
This commit was supported by the NSF-funded DataLad project.
Enable HTTP connection reuse across multiple files, when git-annex
uses http-conduit. Before, a new Manager was created each time
Utility.Url used it. Now, a single Manager gets created the first time,
so connections are reused.
Doesn't help when external programs are used for url download,
but does speed up addurl --fast, fsck --from web, etc.
Testing fsck --fast --from web with 3 files, over high-latency
satellite internet, it sped up from 19.37s to 14.96s.
This commit was supported by the NSF-funded DataLad project.
And for tab completion, by not unnessessarily statting paths to remotes,
which used to cause eg, spin-up of removable drives.
Got rid of the remotes member of Git.Repo. This was a bit painful.
Remote.Git modifies the list of remotes as it reads their configs,
so still need a persistent list of remotes. So, put it in as
Annex.gitremotes. It's only populated by getGitRemotes, so commands
like examinekey that don't care about remotes won't do so.
This commit was sponsored by Jake Vosloo on Patreon.
The problem with combining these is that Build.Standalone etc need only
the BuildInfo, and since not built with cabal, the BuildFlags ifdefs
were causing bogus warnings.
Fourth or fifth try at this and finally found a way to make it work.
Absurd amount of busy-work forced on me by change in cabal's behavior.
Split up Utility modules that need posix stuff out of ones used by
Setup. Various other hacks around inability for Setup to use anything
that ifdefs a use of unix.
Probably lost a full day of my life to this.
This is how build systems make their users hate them. Just saying.
This reverts commit 51228c2306.
No, still doesn't work when built with cabal. It did with stack; stack
must somehow make the unix package implicitly available.
With cabal, System.Posix.Process and System.Posix.Env are both missing.
Seems I had all the work in past commits to make this build, at least on
linux. I'm actually surprised it does, without a unix dep, Utility.Env
still builds ok somehow despite using System.Posix.Env.
This commit was sponsored by Fernando Jimenez on Patreon.
This avoids warnings from stack about the module not being listed in the
cabal file. So, the generated file is also renamed to Build/SysConfig.
Note that the setup program seems to be cached despite these changes; I
had to cabal clean to get cabal to update it so that Build/SysConfig was
written.
This commit was sponsored by Jochen Bartl on Patreon.
They need unix on non-windows, for Utility.Env, which Build.Configure uses,
but cabal can't express that in a custom-setup stanza.
To avoid this problem, Utility.Env would need to be moved into
unix-compat..
Windows needs the setenv package in custom-setup, but I don't want to
pull it in on unix, which would probably break some builds and need more
work. Instead, split out setEnv to a separate module.
Quite likely, unix-compat will get a portable environment layer, and
then both modules can be removed from here.
This commit was sponsored by Øyvind Andersen Holm.
Get ugly reversion out of CHANGELOG.
Also, relocated the windows stack.yaml to top, and updated windows build
instructions.
This commit was sponsored by Henrik Riomar on Patreon.
Needed so that the assistant can download from exports.
updateExportTreeFromLog is normally only run one time, but needs to be
run repeatedly during the lifetime of the assistant.
This commit was sponsored by Ethan Aubin on Patreon.
This is similar to the pusher thread, but a separate thread because git
pushes can be done in parallel with exports, and updating a big export
should not prevent other git pushes going out in the meantime.
The exportThread only runs at most every 30 seconds, since updating an
export is more expensive than pushing. This may need to be tuned.
Added a separate channel for export commits; the committer records a
commit in that channel.
Also, reconnectRemotes records a dummy commit, to make the exporter
thread wake up and make sure all exports are up-to-date. So,
connecting a drive with a directory special remote export will
immediately update it, and getting online will automatically
update S3 and WebDAV exports.
The transfer queue is not involved in exports. Instead, failed
exports are retried much like failed pushes.
This commit was sponsored by Ewen McNeill.
Split exportRemotes out from syncDataRemotes; the parts of the assistant
that upload keys and drop keys from remotes don't apply to exports,
because those operations are not supported.
Some parts of the assistant and webapp do operate on both
syncDataRemotes and exportRemotes. Particularly when downloading from
either of them. Added a downloadRemotes that combines both.
With this, the assistant should download from exports, but it won't yet
upload changes to them.
This commit was sponsored by Fernando Jimenez on Patreon.
* Only export to remotes that were initialized to support it.
* Prevent storing key/value on export remotes.
* Prevent enabling exporttree=yes and encryption in the same remote.
SetupStage Enable was changed to take the old RemoteConfig.
This allowed only setting exporttree when initially setting up a
remote, and not configuring it later after stuff might already be stored
in the remote.
Went with =yes rather than =true for consistency with other parts of
git-annex. Changed docs accordingly.
This commit was supported by the NSF-funded DataLad project.
Security fix: Disallow hostname starting with a dash, which would get
passed to ssh and be treated an option. This could be used by an attacker
who provides a crafted ssh url (for eg a git remote) to execute arbitrary
code via ssh -oProxyCommand.
No CVE has yet been assigned for this hole.
The same class of security hole recently affected git itself,
CVE-2017-1000117.
Method: Identified all places where ssh is run, by git grep '"ssh"'
Converted them all to use a SshHost, if they did not already, for
specifying the hostname.
SshHost was made a data type with a smart constructor, which rejects
hostnames starting with '-'.
Note that git-annex already contains extensive use of Utility.SafeCommand,
which fixes a similar class of problem where a filename starting with a
dash gets passed to a program which treats it as an option.
This commit was sponsored by Jochen Bartl on Patreon.
Added remote configuration settings annex-ignore-command and
annex-sync-command, which are dynamic equivilants of the annex-ignore
and annex-sync configurations.
For this I needed a new DynamicConfig infrastructure. Its implementation
should be as fast as before when there is no dynamic config, and it caches
so shell commands are only run once.
Note that annex-ignore-command exits nonzero when the remote should be ignored.
While that may seem backwards, it allows using the same command for it as
for annex-sync-command when you want to disable both.
This commit was sponsored by Trenton Cronholm on Patreon.
Previously, only sync branches were merged. This makes regular git push
into a repository watched by the assistant auto-merge.
While this does hardcode an assumption about what the remote tracking
branch is named, which some unusual git configurations won't match,
git-annex sync already made the same assumption.
Also, changed behavior when a tracking branch like
refs/remotes/synced/not/master is received. When on the master branch,
that used to get merged into it, but it's the tracking branch for
not/master, so should only be merged in when on the not/master branch.
This commit was sponsored by Ewen McNeill.
* Added annex.resolvemerge configuration, which can be set to false to
disable the usual automatic merge conflict resolution done by git-annex
sync and the assistant.
* sync: Added --no-resolvemerge option.
Note that disabling merge conflict resolution is probably not a good idea
in a direct mode repo or adjusted branch. Since updates to both are done
outside the usual work tree, if it fails the tree is not left in a
conflicted state, and it would be hard to manually resolve the conflict.
Still, made annex.resolvemerge be supported in those cases for consistency.
This commit was sponsored by Riku Voipio.
Removed dependency on MissingH, instead depending on the split
library.
After laying groundwork for this since 2015, it
was mostly straightforward. Added Utility.Tuple and
Utility.Split. Eyeballed System.Path.WildMatch while implementing
the same thing.
Since MissingH's progress meter display was being used, I re-implemented
my own. Bonus: Now progress is displayed for transfers of files of
unknown size.
This commit was sponsored by Shane-o on Patreon.
The former can be useful to make remotes that don't get fully synced with
local changes, which comes up in a lot of situations.
The latter was mostly added for symmetry, but could be useful (though less
likely to be).
Implementing `remote.<name>.annex-pull` was a bit tricky, as there's no one
place where git-annex pulls/fetches from remotes. I audited all
instances of "fetch" and "pull". A few cases were left not checking this
config:
* Git.Repair can try to pull missing refs from a remote, and if the local
repo is corrupted, that seems a reasonable thing to do even though
the config would normally prevent it.
* Assistant.WebApp.Gpg and Remote.Gcrypt and Remote.Git do fetches
as part of the setup process of a remote. The config would probably not
be set then, and having the setup fail seems worse than honoring it if it
is already set.
I have not prevented all the code that does a "merge" from merging branches
from remotes with remote.<name>.annex-pull=false. That could perhaps
be done, but it would need a way to map from branch name to remote name,
and the way refspecs work makes that hard to get really correct. So if the
user fetches manually, the git-annex branch will get merged, for example.
Anther way of looking at/justifying this is that the setting is called
"annex-pull", not "annex-merge".
This commit was supported by the NSF-funded DataLad project.
The slowdown is not going to be large in typical small-ish repos.
And it does not seem to matter if the assistant reacts a little bit slower
in situations involving the expensive scan, since:
a) Those situations typically involve getting back in sync after something
has changed on a remote, often after a disconnect of some duration.
So taking a few seconds more is not noticable.
b) If the scan finds things that it needs to do, it will start
blocking anyway after 10 transfers are queued (due to use of
queueTransferWhenSmall). So, only the speed of finding the first 10
transfers will be impacted by this change.
This commit was sponsored by Jochen Bartl on Patreon.
9c4650358c changed the Read instance for
Key.
I've checked all uses of that instance (by removing it and seeing what
breaks), and they're all limited to the webapp, except one.
That is GitAnnexDistribution's Read instance.
So, 9c4650358c would have broken upgrades
of git-annex from downloads.kitenet.net. Once the .info files there got
updated for a new release, old releases would have failed to parse them
and never upgraded.
To fix this, I found a way to make the .info files that contain
GitAnnexDistribution values be readable by the old version of git-annex.
This commit was sponsored by Ewen McNeill.
Where before the "name" of a key and a backend was a string, this makes
it a concrete data type.
This is groundwork for allowing some varieties of keys to be disabled
in file2key, so git-annex won't use them at all.
Benchmarks ran in my big repo:
old git-annex info:
real 0m3.338s
user 0m3.124s
sys 0m0.244s
new git-annex info:
real 0m3.216s
user 0m3.024s
sys 0m0.220s
new git-annex find:
real 0m7.138s
user 0m6.924s
sys 0m0.252s
old git-annex find:
real 0m7.433s
user 0m7.240s
sys 0m0.232s
Surprising result; I'd have expected it to be slower since it now parses
all the key varieties. But, the parser is very simple and perhaps
sharing KeyVarieties uses less memory or something like that.
This commit was supported by the NSF-funded DataLad project.
This allows using functions that generate CreateProcess and passing the
result to processTranscript', which is more flexible, and also simpler
than the old interface.
This commit was sponsored by Riku Voipio.
... to avoid it consuming stdin that it shouldn't.
This fixes git-annex-checkpresentkey --batch remote, which didn't output
results for all keys passed into it.
Other git-annex commands that communicate with a remote over ssh may also
have been consuming stdin that they shouldn't have, which could have
impacted using them in eg, shell scripts. For example, a shell script
reading files from stdin and passing them to git annex drop would be
impacted by this bug, whenever git annex drop ran git-annex-shell
checkpresent, it would consume part/all of the stdin that the shell script
was supposed to consume.
Fixed by adding a ConsumeStdin parameter to Annex.Ssh.sshOptions, which
is used throughout git-annex to run ssh (in order for ssh connection
caching to work). Every call site was checked to see if it used
CreatePipe for stdin, and if not was marked NoConsumeStdin.
Users occasionally report this error firing, and I can't see why,
so include the rejected PairData in the error message.
This is safe even if it contains evil escape characters, because showing
it displays them in escaped form.
This commit was sponsored by Bruno BEAUFILS on Patreon.
import: --deduplicate and --skip-duplicates were implemented inneficiently;
they unncessarily hashed each file twice. They have been improved to only
hash once.
The new approach is to lock down (minimally) and hash files, and then
reuse that information when importing them.
This was rather tricky, especially in detecting changes to files while
they are being imported.
The output of import changed slightly. While before it silently skipped
over files with eg --skip-duplicates, now it shows each file as it starts
to act on it. Since every file is hashed first thing, it would otherwise
not be clear what file import is chewing on. (Actually, it wasn't clear
before when any of the duplicates switches were used.)
This commit was sponsored by Alexander Thompson on Patreon.
Most remotes have an idempotent setup that can be reused for
enableremote, but in a few cases, it needs to tell which, and whether
a UUID was provided to setup was used.
This is groundwork for making initremote be able to provide a UUID.
It should not change any behavior.
Note that it would be nice to make the UUID always be provided to setup,
and make setup not need to generate and return a UUID. What prevented
this simplification is Remote.Git.gitSetup, which needs to reuse the
UUID of the git remote when setting it up, and so has to return that
UUID.
This commit was sponsored by Thom May on Patreon.
... to control the default behavior in all clones of a repository.
This includes a new Configurable data type, so the GitConfig type indicates
which values can be configured this way.
The implementation should be quite efficient; the config log is only read
once, and only when a Configurable value has not already been set by
git-config.
Indeed, it would be nice in the future to extend this, so that git-config
is itself only read on demand. Some commands may not need to look at the
git configuration at all.
This commit was sponsored by Trenton Cronholm on Patreon.
Turns out that Data.List.Utils.split is slow and makes a lot of
allocations. Here's a much simpler single character splitter that behaves
the same (even in wacky corner cases) while running in half the time and
75% the allocations.
As well as being an optimisation, this helps move toward eliminating use of
missingh.
(Data.List.Split.splitOn is nearly as slow as Data.List.Utils.split and
allocates even more.)
I have not benchmarked the effect on git-annex, but would not be surprised
to see some parsing of eg, large streams from git commands run twice as
fast, and possibly in less memory.
This commit was sponsored by Boyd Stephen Smith Jr. on Patreon.
Since the user does not know whether it will run su or sudo, indicate
whether the password prompt will be for root or the user's password,
when possible.
I assume that programs like gksu that can prompt for either depending on
system setup will make clear in their prompt what they're asking for.
Building w/o the webapp is not supposed to pull in any AGPLed files.
I appear to have written all the code in these files;
the only commit by anyone else is 64e844e1fe
and is a spelling fix that is not copyrightable.
ghc 8 added backtraces on uncaught errors. This is great, but git-annex was
using error in many places for a error message targeted at the user, in
some known problem case. A backtrace only confuses such a message, so omit it.
Notably, commands like git annex drop that failed due to eg, numcopies,
used to use error, so had a backtrace.
This commit was sponsored by Ethan Aubin.
This makes merging a remote into a freshly created direct mode repository
work the same as it works in indirect mode.
The git-annex branches would get merged in any case by a sync,
since that doesn't use git merge.
This might need to be revisited later to better mirror git's behavior.
I've long considered the XMPP support in git-annex a wart.
It's nice to remove it.
(This also removes the NetMessager, which was only used for XMPP, and the
daemonstatus's desynced list (likewise).)
Existing XMPP remotes should be ignored by git-annex.
This commit was sponsored by Brock Spratlen on Patreon.
Yesod didn't used to do auth checks for that, but this may have changed.
I don't have a way to reproduce the reported problem yet, but this change
certianly won't hurt anything.
This commit was sponsored by Thom May on Patreon.
Note that get --from foo --failed will get things that a previous get --from bar
tried and failed to get, etc. I considered making --failed only retry
transfers from the same remote, but it was easier, and seems more useful,
to not have the same remote requirement.
Noisy due to some refactoring into Types/
Mostly the username is only used for the git committer or other display
purposes, and we can just fall back to a dummy value in these cases.
The only remaining place where an error is thrown is when starting local
pairing, which needs the username to be known.
Removed the instance LensGpgEncParams RemoteConfig because it encouraged
code that does not take the RemoteGitConfig into account.
RemoteType's setup was changed to take a RemoteGitConfig,
although the only place that is able to provide a non-empty one is
enableremote, when it's changing an existing remote. This led to several
folow-on changes, and got RemoteGitConfig plumbed through.
The keys database handle needs to be closed after merging, because the
smudge filter, in another process, updates the database. Old cached info
can be read for a while from the open database handle; closing it ensures
that the info written by the smudge filter is available.
This is pretty horribly ad-hoc, and it's especially nasty that the
transferrer closes the database every time.
It started exporting a isSymbolicLink which supports windows. But,
git-annex does no use symlinks on windows yet and this conflicts with the
function by the same name from unix-compat, so hide it.
This way, the git-annex-standalone.deb, which does set GIT_ANNEX_APP_BASE,
will not have the assistant install wrappers that it does not need to,
since git-annex is installed system wide from a package.
git 2.8.1 (or perhaps 2.9.0) is going to prevent git merge from merging in
unrelated branches. Since the webapp's pairing etc features often combine
together repositories with unrelated histories, work around this behavior
change by setting GIT_MERGE_ALLOW_UNRELATED_HISTORIES when the assistant
merges.
Note though that this is not done for git annex sync's merges, so
it will follow git's default or configured behavior.
When annex.thin is set, adding an object will add the execute bits to the
work tree file, and this does mean that the annex object file ends up
executable.
This doesn't add any complexity that wasn't already present, because git
annex add of an executable file has always ingested it so that the annex
object ends up executable.
But, since an annex object file can be executable or not, when populating
an unlocked file from one, the executable bit is always added or removed
to match the mode of the pointer file.
So, it will pull and push the original branch, not the adjusted one.
And, for merging, it will use updateAdjustedBranch (not implemented yet).
Note that remaining uses of Git.Branch.current need to be checked too;
for things that should act on the original branch, and not the adjusted
branch.
* Removed the webapp-secure build flag, rolling it into the webapp build
flag.
* Removed the quvi and tahoe build flags, which only adds aeson to
the core dependencies.
* Removed the feed build flag, which only adds feed to the core
dependencies.
Build flags have cost in both code complexity and also make Setup configure
have to work harder to find a usable set of build flags when some
dependencies are missing.
Previously, it only flushed when the queue got larger than 1.
Also, make the queue auto-flush when items are added, rather than needing
to be flushed as a separate step. This simplifies the code and make it more
efficient too, as it avoids needing to read the queue out of the state to
check if it should be flushed.
Linking the file to the tmp dir was not necessary in the clean
filter, and it caused the ctime to change, which caused git to think
the file was changed. This caused git status to get slow as it kept
re-cleaning unchanged files.
Fixes several bugs with updates of pointer files. When eg, running
git annex drop --from localremote
it was updating the pointer file in the local repository, not the remote.
Also, fixes drop ../foo when run in a subdir, and probably lots of other
problems. Test suite drops from ~30 to 11 failures now.
TopFilePath is used to force thinking about what the filepath is relative
to.
The data stored in the sqlite db is still just a plain string, and
TopFilePath is a newtype, so there's no overhead involved in using it in
DataBase.Keys.
In v6 unlocked mode, this fixes a problem that was making eg,
echo > file cause the assistant to copy the file to the annex object,
instead of hard linking it. That because 2 change events were seen
(one for opening the file and one for closing) and processed together
the file was then locked down twice. Which meant it had mutiple hard links,
and so prevented linkAnnex from hard linking it.
There might be scenarios where multiple events come in, but staggered such
that a file gets locked down repeatedly, and it would still be copied to
the annex object in that case.
This can happen when ingesting a new file in either locked or unlocked
mode, when some unlocked files in the repo use the same key, and the
content was not locally available before.
There should be no behavior changes in this commit, it just adds a more
expressive data type and adjusts code that had been passing around a [UUID]
or sometimes a Maybe Remote to instead use [VerifiedCopy].
Although, since some functions were taking two different [UUID] lists,
there's some potential for me to have gotten it horribly wrong.
Also, rename lockContent to lockContentExclusive
inAnnexSafe should perhaps be eliminated, and instead use
`lockContentShared inAnnex`. However, I'm waiting on that, as there are
only 2 call sites for inAnnexSafe and it's fiddly.
It's confusing, easy to select by accident and get into a situation the
webapp offers no easy recovery from, and pausing syncing works just as well
in most situations.
Added support for storageclass=STANDARD_IA to use Amazon's
new Infrequently Accessed storage.
Also allows using storageclass=NEARLINE to use Google's NearLine storage.
The necessary changes to aws to support this are in
https://github.com/aristidb/aws/pull/176
When gpg.program is configured, it's used to get the command to run for
gpg. Useful on systems that have only a gpg2 command or want to use it
instead of the gpg command.
yesod-core-1.4.14 changed the Template Haskell behind the expansion of
mkYesodData, such that it now must have the application data type
declared before it is called. This change simply moves the call to
mkYesodData to be after the data type it wants to access is declared.
https://github.com/yesodweb/yesod/issues/1059 has some discussion of the
issue from the Yesod side.
This works, but needs more testing and work on cases like encrypted repos,
enabling existing repositories, etc.
This commit was sponsored by Shaun Westmacott.
This was a reversion caused by the relative path changes in 5.20150113.
Other uses of addAuthorizedKeys seem to be ok. If the user enters a
directory like ~/annex, it writes GIT_ANNEX_SHELL_DIRECTORY=annex, and
git-annex-shell assumes that's relative to HOME.
This removes a bit of complexity, and should make things faster
(avoids tokenizing Params string), and probably involve less garbage
collection.
In a few places, it was useful to use Params to avoid needing a list,
but that is easily avoided.
Problems noticed while doing this conversion:
* Some uses of Params "oneword" which was entirely unnecessary
overhead.
* A few places that built up a list of parameters with ++
and then used Params to split it!
Test suite passes.
I've tested all the dataenc to sandi conversions except Assistant.XMPP,
and all have unchanged behavior, including behavior on large unicode code
points.
webapp: When adding another local repository, and combining it with the
current repository, the new repository's remote path was set to "." rather
than the path to the current repository. This was a reversion caused by the
relative path changes in 5.20150113.
Most of the time, there will be no discreprancy between programPath and
readProgramFile.
But, the programFile might have been written by an old version of git-annex
that is still installed, while a newer one is currently running. In this
case, we want to run the same one that's currently running.
This is especially important for things like the GIT_SSH=git-annex used for
ssh connection caching.
The only code that still uses readProgramFile directly is the upgrade code,
which needs to know where the standalone git-annex was installed, in order to
upgrade it.
Note that while the assistant detects changes made to remote names, I left
the commit message fixed rather than calculating it after every commit. It
doesn't seem worth the CPU to do the latter.
* init: Repository tuning parameters can now be passed when initializing a
repository for the first time. For details, see
http://git-annex.branchable.com/tuning/
* merge: Refuse to merge changes from a git-annex branch of a repo
that has been tuned in incompatable ways.
This is necessary for interop between inode caches created on unix and
windows. Which is more important than supporting inodecaches for large keys
with the wrong size, which are broken anyway.
There should be no slowdown from this change, except on Windows.
Avoid using fileSize which maxes out at just 2 gb on Windows.
Instead, use hFileSize, which doesn't have a bounded size.
Fixes support for files > 2 gb on Windows.
Note that the InodeCache code only needs to compare a file size,
so it doesn't matter it the file size wraps. So it has been
left as-is. This was necessary both to avoid invalidating existing inode
caches, and because the code passed FileStatus around and would have become
more expensive if it called getFileSize.
This commit was sponsored by Christian Dietrich.
Reverts 965e106f24
Unfortunately, this caused breakage on Windows, and possibly elsewhere,
because parentDir and takeDirectory do not behave the same when there is a
trailing directory separator.
parentDir is less safe than takeDirectory, especially when working
with relative FilePaths. It's really only useful in loops that
want to terminate at /
This commit was sponsored by Audric SCHILTKNECHT.
This allows using Git.Remote w/o needing to have Git.BuildVersion, which
requires configure. It will simplify github-backup when these libraries are
used there.
