Commit graph

217 commits

Author SHA1 Message Date
Joey Hess
75aab72d23
mostly done with location log precaching
Some nice wins.
2020-07-13 17:04:02 -04:00
Joey Hess
88a7fb5cbb
convert all applicable commands to new 2x faster annexed file seeking
This removes all calls to inAnnex, except for some involving --batch.
It may be that the batch code could get a similar speedup, but I don't
know if people habitually pass a huge number of files through --batch
that git-annex does not need to do anything to process, so I skipped it
for now.

A few calls to ifAnnexed remain, and might be worth doing more to
convert. In particular, Command.Sync has one that would probably speed
it up by a good amount.

(also removed some dead code from Command.Lock)
2020-07-10 15:45:38 -04:00
Joey Hess
89b2542d3c
annex.skipunknown with transition plan
Added annex.skipunknown git config, that can be set to false to change the
behavior of commands like `git annex get foo*`, to not skip over files/dirs
that are not checked into git and are explicitly listed in the command
line.

Significant complexity was needed to handle git-annex add, which uses some
git ls-files calls, but needs to not use --error-unmatch because of course
the files are not known to git.

annex.skipunknown is planned to change to default to false in a
git-annex release in early 2022. There's a todo for that.
2020-05-28 15:55:17 -04:00
Joey Hess
e04a931439
improve transfer stages for some commands
move --to, copy --to, mirror --to: When concurrency is enabled, run cleanup
actions in separate job pool from uploads.

transferStages was confusingly named, it's only useful when doing downloads
as then the verify actions can be run concurrently with other downloads.
For commands that upload, there will be more concurrency from running
cleanup actions in a separate job pool.

As for sync, I left it using downloadStages although that's not optimal
for the part of a sync that uploads. Perhaps it should use the union of
both?
2020-05-26 11:55:50 -04:00
Joey Hess
dc7dc1e179
refactor 2020-05-14 14:21:58 -04:00
Joey Hess
4be94c67c7
make removeKey throw exceptions 2020-05-14 14:11:05 -04:00
Joey Hess
d9c7f81ba4
make retrieveKeyFile and retrieveKeyFileCheap throw exceptions
Converted retrieveKeyFileCheap to a Maybe, to avoid needing to throw a
exception when a remote doesn't support it.
2020-05-13 17:07:07 -04:00
Joey Hess
c1cd402081
make storeKey throw exceptions
When storing content on remote fails, always display a reason why.

Since the Storer used by special remotes already did, this mostly affects
git remotes, but not entirely. For example, if git-lfs failed to connect to
the endpoint, it used to silently return False.
2020-05-13 14:03:00 -04:00
Joey Hess
cd1676d604
fix bug involving local git remote and out of date location log
get --from, move --from: When used with a local git remote, these used to
silently skip files that the location log thought were present on the
remote, when the remote actually no longer contained them. Since that
behavior could be surprising, now instead display a warning.

I got very confused when I encountered this behavior, since it was silently
skipping a file I needed that whereis said was on the remote.

get without --from already displayed a "unable to access these remotes"
message, which while a bit misleading in that the remote is likely
accessible, but just doesn't contain the file, at least indicated something
went wrong.

Having get --from display a warning makes it in line with get
w/o --from, so seems certianly ok. It might be there are situations where
move --from is used, on eg a whole directory, and the user only wants to
move whatever is present in the remote, and is perfectly ok with files
that are not present being skipped. So I'm less sure about the new warning
being ok there. OTOH, only local git remotes avoiding displaying a warning
in that case too, so this just brings them into line with other remotes.

(Also note that this makes it a little bit faster when dealing with a lot of
files, since it avoids a redundant stat of the file.)
2020-04-21 12:36:58 -04:00
Joey Hess
b88f89c1ef
get the most commonly used commands building again
A quick benchmark of whereis shows not much speed improvement, maybe a
few percent. Profiling it found a hotspot, adds to todo.
2019-12-04 13:45:18 -04:00
Joey Hess
9d36c826c0
use fine-grained WorkerStages when transferring and verifying
This means that Command.Move and Command.Get don't need to
manually set the stage, and is a lot cleaner conceptually.

Also, this makes Command.Sync.syncFile use the worker pool better.
In the scenario where it first downloads content and then uploads it to
some other remotes, it will start in TransferStage, then enter VerifyStage
and then go back to TransferStage for each transfer to the remotes.
Before, it entered CleanupStage after the download, and stayed in it for
the upload, so too many transfer jobs could run at the same time.

Note that, in Remote.Git, it uses runTransfer and also verifyKeyContent
inside onLocal. That has a Annex state for the remote, with no worker pool.
So the resulting calls to enteringStage won't block in there.

While Remote.Git.copyToRemote does do checksum verification, I
realized that should not use a verification slot in the WorkerPool
to do it. Because, it's reading back from eg, a removable disk to checksum.
That will contend with other writes to that disk. It's best to treat
that checksum verification as just part of the transer. So, removed the todo
item about that, as there's nothing needing to be done.
2019-06-19 13:24:20 -04:00
Joey Hess
53882ab4a7
make WorkerStage an open type
Rather than limiting it to PerformStage and CleanupStage, this opens it
up so any number of stages can be added as needed by commands.

Each concurrent command has a set of stages that it uses, and only
transitions between those can block waiting for a free slot in the
worker pool. Calling enteringStage for some other stage does not block,
and has very little overhead.

Note that while before the Annex state was duplicated on the first call
to commandAction, this now happens earlier, in startConcurrency.
That means that seek stage actions should that use startConcurrency
and then modify Annex state won't modify the state of worker threads
they then start. I audited all of them, and only Command.Seek
did so; prepMerge changes the working directory and so has to come
before startConcurrency.

Also, the remote list is built before duplicating the state, which means
that it gets built earlier now than it used to. This would only have an
effect of making commands that end up not needing to perform any actions
unncessary build the remote list (only when they're run with concurrency
enable), but that's a minor overhead compared to commands seeking
through the work tree and determining they don't need to do anything.
2019-06-19 13:05:03 -04:00
Joey Hess
04cc470201
run download checksum verification in separate job pool
get, move, copy, sync: When -J or annex.jobs has enabled concurrency,
checksum verification uses a separate job pool than is used for
downloads, to keep bandwidth saturated.

Not yet done for upload checksum verification, but that only affects
remotes on local disks.
2019-06-17 14:58:02 -04:00
Joey Hess
ba2551da6f
add startingNoMessage
Fixes the last wart in the StartMessage transition. A few commands
include other CommandStart actions that generate output, and
do not themselves need to display a start/end message.
2019-06-12 14:11:23 -04:00
Joey Hess
8e5ea28c26
finish CommandStart transition
The hoped for optimisation of CommandStart with -J did not materialize.
In fact, not runnign CommandStart in parallel is slower than -J3.
So, CommandStart are still run in parallel.

(The actual bad performance I've been seeing with -J in my big repo
has to do with building the remoteList.)

But, this is still progress toward making -J faster, because it gets rid
of the onlyActionOn roadblock in the way of making CommandCleanup jobs
run separate from CommandPerform jobs.

Added OnlyActionOn constructor for ActionItem which fixes the
onlyActionOn breakage in the last commit.

Made CustomOutput include an ActionItem, so even things using it can
specify OnlyActionOn.

In Command.Move and Command.Sync, there were CommandStarts that used
includeCommandAction, so output messages, which is no longer allowed.
Fixed by using startingCustomOutput, but that's still not quite right,
since it prevents message display for the includeCommandAction run
inside it too.
2019-06-12 13:24:01 -04:00
Joey Hess
436f107715
make CommandStart return a StartMessage
The goal is to be able to run CommandStart in the main thread when -J is
used, rather than unncessarily passing it off to a worker thread, which
incurs overhead that is signficant when the CommandStart is going to
quickly decide to stop.

To do that, the message it displays needs to be displayed in the worker
thread, after the CommandStart has run.

Also, the change will mean that CommandStart will no longer necessarily
run with the same Annex state as CommandPerform. While its docs already
said it should avoid modifying Annex state, I audited all the
CommandStart code as part of the conversion. (Note that CommandSeek
already sometimes runs with a different Annex state, and that has not been
a source of any problems, so I am not too worried that this change will
lead to breakage going forward.)

The only modification of Annex state I found was it calling
allowMessages in some Commands that default to noMessages. Dealt with
that by adding a startCustomOutput and a startingUsualMessages.
This lets a command start with noMessages and then select the output it
wants for each CommandStart.

One bit of breakage: onlyActionOn has been removed from commands that used it.
The plan is that, since a StartMessage contains an ActionItem,
when a Key can be extracted from that, the parallel job runner can
run onlyActionOn' automatically. Then commands won't need to worry about
this detail. Future work.

Otherwise, this was a fairly straightforward process of making each
CommandStart compile again. Hopefully other behavior changes were mostly
avoided.

In a few cases, a command had a CommandStart that called a CommandPerform
that then called showStart multiple times. I have collapsed those
down to a single start action. The main command to perhaps suffer from it
is Command.Direct, which used to show a start for each file, and no
longer does.

Another minor behavior change is that some commands used showStart
before, but had an associated file and a Key available, so were changed
to ShowStart with an ActionItemAssociatedFile. That will not change the
normal output or behavior, but --json output will now include the key.
This should not break it for anyone using a real json parser.
2019-06-06 17:13:54 -04:00
Joey Hess
258a7c5cd1
add Key to all ActionItem constructors 2019-06-06 12:53:24 -04:00
Joey Hess
40ecf58d4b
update licenses from GPL to AGPL
This does not change the overall license of the git-annex program, which
was already AGPL due to a number of sources files being AGPL already.

Legally speaking, I'm adding a new license under which these files are
now available; I already released their current contents under the GPL
license. Now they're dual licensed GPL and AGPL. However, I intend
for all my future changes to these files to only be released under the
AGPL license, and I won't be tracking the dual licensing status, so I'm
simply changing the license statement to say it's AGPL.

(In some cases, others wrote parts of the code of a file and released it
under the GPL; but in all cases I have contributed a significant portion
of the code in each file and it's that code that is getting the AGPL
license; the GPL license of other contributors allows combining with
AGPL code.)
2019-03-13 15:48:14 -04:00
Joey Hess
53526136e8
move commandAction out of CmdLine.Seek
This is groundwork for nested seek loops, eg seeking over all files and
then performing commandActions on a list of remotes, which can be done
concurrently.

This commit was sponsored by Boyd Stephen Smith Jr. on Patreon.
2018-10-01 14:12:06 -04:00
Joey Hess
1d1054faa6
added -z
Added -z option to git-annex commands that use --batch, useful for
supporting filenames containing newlines.

It only controls input to --batch, the output will still be line delimited
unless --json or etc is used to get some other output. While git often
makes -z affect both input and output, I don't like trying them together,
and making it affect output would have been a significant complication,
and also git-annex output is generally not intended to be machine parsed,
unless using --json or a format option.

Commands that take pairs like "file key" still separate them with a space
in --batch mode. All such commands take care to support filenames with
spaces when parsing that, so there was no need to change it, and it would
have needed significant changes to the batch machinery to separate tose
with a null.

To make fromkey and registerurl support -z, I had to give them a --batch
option. The implicit batch mode they enter when not provided with input
parameters does not support -z as that would have complicated option
parsing. Seemed better to move these toward using the same --batch as
everything else, though the implicit batch mode can still be used.

This commit was sponsored by Ole-Morten Duesund on Patreon.
2018-09-20 16:11:47 -04:00
Joey Hess
12460fcea6
make --batch honor matching options
When --batch is used with matching options like --in, --metadata, etc, only
operate on the provided files when they match those options. Otherwise, a
blank line is output in the batch protocol.

Affected commands: find, add, whereis, drop, copy, move, get

In the case of find, the documentation for --batch already said it honored
the matching options. The docs for the rest didn't, but it makes sense to
have them honor them. While this is a behavior change, why specify the
matching options with --batch if you didn't want them to apply?

Note that the batch output for all of the affected commands could
already output a blank line in other cases, so batch users should
already be prepared to deal with it.

git-annex metadata didn't seem worth making support the matching options,
since all it does is output metadata or set metadata, the use cases for
using it in combination with the martching options seem small. Made it
refuse to run when they're combined, leaving open the possibility for later
support if a use case develops.

This commit was sponsored by Brett Eisenberg on Patreon.
2018-08-08 12:07:06 -04:00
Joey Hess
b657242f5d
enforce retrievalSecurityPolicy
Leveraged the existing verification code by making it also check the
retrievalSecurityPolicy.

Also, prevented getViaTmp from running the download action at all when the
retrievalSecurityPolicy is going to prevent verifying and so storing it.

Added annex.security.allow-unverified-downloads. A per-remote version
would be nice to have too, but would need more plumbing, so KISS.
(Bill the Cat reference not too over the top I hope. The point is to
make this something the user reads the documentation for before using.)

A few calls to verifyKeyContent and getViaTmp, that don't
involve downloads from remotes, have RetrievalAllKeysSecure hard-coded.
It was also hard-coded for P2P.Annex and Command.RecvKey,
to match the values of the corresponding remotes.

A few things use retrieveKeyFile/retrieveKeyFileCheap without going
through getViaTmp.
* Command.Fsck when downloading content from a remote to verify it.
  That content does not get into the annex, so this is ok.
* Command.AddUrl when using a remote to download an url; this is new
  content being added, so this is ok.

This commit was sponsored by Fernando Jimenez on Patreon.
2018-06-21 13:37:01 -04:00
Joey Hess
2fabd7cdb5
remove the older move --force, which never behaved as documented and seems useless
* move: --force was accidentially enabling two unrelated behaviors
  since 6.20180427. The older behavior, which has never been well
  documented and seems almost entirely useless, has been removed.
* copy: --force no longer does anything.

This commit was sponsored by Øyvind Andersen Holm.
2018-05-21 13:21:19 -04:00
Joey Hess
f56594af9e
finish fixing inverted Ord for TrustLevel
Flipped all comparisons. When a TrustLevel list was wanted from Trusted
downwards, used Down to compare it in that order.

This commit was sponsored by mo on Patreon.
2018-04-13 15:17:54 -04:00
Joey Hess
a0e4b9678b
fix inverted Ord for TrustLevel (intermediate commit)
This commit removes the Ord and Enum instances, commenting out all code
that depends on them, to make sure that all code effected by the
inversion fix has been identified.

(Assuming no ifdefs involve TrustLevel.)

The next commit will fix up all the identified code.
2018-04-13 14:50:14 -04:00
Joey Hess
64980db7d9
move: Avoid drops that make bad situations worse, but otherwise allow
See the big comment at the bottom of Command.Drop for the full details.

(The --safe/--unsafe options were never released.)

This commit was sponsored by Jake Vosloo on Patreon.
2018-04-13 14:36:43 -04:00
Joey Hess
af8546990d
move: --safe/--unsafe and potential drop race fix
move: Added --safe option, which makes move honor numcopies settings.
Also --unsafe enables the default behavior, anticipating that the
default may one day change.

This commit was sponsored by Ethan Aubin.
2018-04-09 16:20:10 -04:00
Joey Hess
ae530f043e
disentagle copy and move option parsing 2018-04-09 14:38:46 -04:00
Joey Hess
0106752db2
refactor FromToHereOptions 2018-04-09 14:29:28 -04:00
Joey Hess
46d4316954
implement annex.retry et al
Added annex.retry, annex.retry-delay, and per-remote versions to configure
transfer retries.

This commit was supported by the NSF-funded DataLad project.
2018-03-29 13:04:07 -04:00
Joey Hess
6583448bab
add --json-error-messages (not yet implemented)
Added --json-error-messages option, which includes error messages in the
json output, rather than outputting them to stderr.

The actual rediretion of errors is not implemented yet, this is only
the docs and option plumbing.

This commit was supported by the NSF-funded DataLad project.
2018-02-19 14:32:15 -04:00
Joey Hess
4781ca297b
showStart variant for when there's no worktree file
Clean up some uses of showStart with "" for the file,
or in some cases, a non-filename description string. That would
generate bad json, although none of the commands doing that
supported --json.

Using "" for the file resulted in output like "foo  rest";
now the extra space is eliminated.

This commit was sponsored by Fernando Jimenez on Patreon.
2017-11-28 15:14:16 -04:00
Joey Hess
e1ac299ad0
better dup key with -J fix
This avoids all the complication about redundant work discussed in
the previous try at fixing this. At the expense of needing each command
that could have the problem to be patched to simply wrap the action in
onlyActionOn once the key is known. But there do not seem to be many
such commands.

onlyActionOn' should not be used with a CommandStart (or CommandPerform),
although the types do allow it. onlyActionOn handles running the whole
CommandStart chain. I couldn't immediately see a way to avoid mistken
use of onlyActionOn'.

This commit was supported by the NSF-funded DataLad project.
2017-10-17 18:48:53 -04:00
Joey Hess
68a49adcda
Improve behavior when -J transfers multiple files that point to the same key
After a false start, I found a fairly non-intrusive way to deal with it.
Although it only handles transfers -- there may be issues with eg
concurrent dropping of the same key, or other operations.

There is no added overhead when -J is not used, other than an added
inAnnex check. When -J is used, it has to maintain and check a small
Set, which should be negligible overhead.

It could output some message saying that the transfer is being done by
another thread. Or it could even display the same progress info for both
files that are being downloaded since they have the same content. But I
opted to keep it simple, since this is rather an edge case, so it just
doesn't say anything about the transfer of the file until the other
thread finishes.

Since the deferred transfer action still runs, actions that do more than
transfer content will still get a chance to do their other work. (An
example of something that needs to do such other work is P2P.Annex,
where the download always needs to receive the content from the peer.)
And, if the first thread fails to complete a transfer, the second thread
can resume it.

But, this unfortunately means that there's a risk of redundant work
being done to transfer a key that just got transferred.
That's not ideal, but should never cause breakage; the same
thing can occur when running two separate git-annex processes.

The get/move/copy/mirror --from commands had extra inAnnex checks added,
inside the download actions. Without those checks, the first thread
downloaded the content, and then the second thread woke up and
downloaded the same content redundantly.

move/copy/mirror --to is left doing redundant uploads for now. It
would need a second checkPresent of the remote inside the upload
to avoid them, which would be expensive. A better way to avoid
redundant work needs to be found..

This commit was supported by the NSF-funded DataLad project.
2017-10-17 17:10:50 -04:00
Joey Hess
85ed38a574
Avoid repeated checking that files passed on the command line exist.
git annex add, git annex lock etc make multiple seek passes,
and each seek pass checked that files existed. That was unncessary
redundant work.

Fixed by adding a new WorkTreeItem type, make seek actions use it,
and check that the files exist when constructing it.

This commit was supported by the NSF-funded DataLad project.
2017-10-16 14:10:20 -04:00
Joey Hess
f403c23bc6
copy, move: Behave same with --fast when sending to remotes located on a local disk as when sending to other remotes.
Let --fast override use of hasKey even when hasKeyCheap.
2017-09-29 16:30:43 -04:00
Joey Hess
2eb6309d3e
move, copy: Support --batch. 2017-08-15 12:39:10 -04:00
Joey Hess
02df5c5932
support --to=. as shorthand for --to=here 2017-06-01 13:12:42 -04:00
Joey Hess
bb18026b2c
move --to=here
* move --to=here moves from all reachable remotes to the local repository.

The output of move --from remote is changed slightly, when the remote and
local both have the content. It used to say:
move foo ok
Now:
move foo (from theremote...) ok

That was done so that, when move --to=here is used and the content is
locally present and also in several remotes, it's clear which remotes the
content gets dropped from.

Note that move --to=here will report an error if a non-reachable remote
contains the file, even if the local repository also contains the file. I
think that's reasonable; the user may be intending to move all other copies
of the file from remotes.

OTOH, if a copy of the file is believed to be present in some repository
that is not a configured remote, move --to=here does not report an error.
So a little bit inconsistent, but erroring in this case feels wrong.

copy --to=here came along for free, but it's basically the same behavior as
git-annex get, and probably with not as good messages in edge cases
(especially on failure), so I've not documented it.

This commit was sponsored by Anthony DeRobertis on Patreon.
2017-05-31 17:00:18 -04:00
Joey Hess
5ee6912cf3
support parsing options like --to=here
Reworked remote name parsing to allow things like that. Command.Move
uses it for --to=here, although there's not yet an implementation of
that option.

This commit was sponsored by Ignacio on Patreon.
2017-05-31 16:49:28 -04:00
Joey Hess
c8e1e3dada
AssociatedFile newtype
To prevent any further mistakes like 301aff34c4

This commit was sponsored by Francois Marier on Patreon.
2017-03-10 13:35:31 -04:00
Joey Hess
0a4479b8ec
Avoid backtraces on expected failures when built with ghc 8; only use backtraces for unexpected errors.
ghc 8 added backtraces on uncaught errors. This is great, but git-annex was
using error in many places for a error message targeted at the user, in
some known problem case. A backtrace only confuses such a message, so omit it.

Notably, commands like git annex drop that failed due to eg, numcopies,
used to use error, so had a backtrace.

This commit was sponsored by Ethan Aubin.
2016-11-15 21:29:54 -04:00
Joey Hess
8dcf79694d
enable forwardRetry for command-line transfers
If a transfer fails for some reason, but some data managed to be sent, the
transfer will be retried. (The assistant already did this.)

Possible impacts:

* More ssh prompts if ssh needs to prompt for a password to connect to a
  host, or is prompting about some other problem like a ssh key mismatch.

* More data transfer due to retrying, epecially when a remote does not
  support resuming a transfer.

  In the worst case, a lot of data will be transferred but it fails before
  the end, and then all that data gets transferred again plus one byte more;
  repeat until it manages to get the whole file.
2016-10-26 15:38:27 -04:00
Joey Hess
3e22d60549
copy, move, mirror: Support --json and --json-progress. 2016-09-09 16:24:26 -04:00
Joey Hess
10ddf2c3bd
remove TransferObserver
unused after last commit
2016-08-03 13:46:20 -04:00
Joey Hess
1a0e2c9901
get, move, copy, mirror: Added --failed switch which retries failed copies/moves
Note that get --from foo --failed will get things that a previous get --from bar
tried and failed to get, etc. I considered making --failed only retry
transfers from the same remote, but it was easier, and seems more useful,
to not have the same remote requirement.

Noisy due to some refactoring into Types/
2016-08-03 12:37:12 -04:00
Joey Hess
d13194b230
--branch, stage 2
Show branch:file that is being operated on.

I had to make ActionItem a type and not a type class because
withKeyOptions' passed two different types of values when using the type
class, and I could not get the type checker to accept that.
2016-07-20 15:23:43 -04:00
Joey Hess
74e01a2d01
move --to: Better behavior when system is completely out of disk space; drop content from disk before writing location log.
I noticed move --to failing when there was no disk space. The file was sent
to the remote, but it crashed before it could be dropped locally. This
could fix that.
2016-06-05 13:51:22 -04:00
Joey Hess
737e45156e
remove 163 lines of code without changing anything except imports 2016-01-20 16:36:33 -04:00
Joey Hess
c0c595345c
arrange for regional output manager to run when -J is enabled
Commands that want to use it have to run their seek action inside
allowConcurrentOutput. Which seems reasonable; perhaps some future command
will want to support the -J flag but not use regions.

The region state moved from Annex to MessageState. This makes sense
organizationally, and note that some uses of onLocal use a different Annex
state, but pass the MessageState into it, which is what is needed.
2015-11-04 16:22:43 -04:00
Joey Hess
e392ec112f
also generate a drop safety proof for move --from remote 2015-10-09 16:16:03 -04:00
Joey Hess
6a72045707
fix local dropping to not require extra locking of copies, but only that the local copy be locked for removal 2015-10-09 15:48:02 -04:00
Joey Hess
4d50958ed7
add lockContentShared
Also, rename lockContent to lockContentExclusive

inAnnexSafe should perhaps be eliminated, and instead use
`lockContentShared inAnnex`. However, I'm waiting on that, as there are
only 2 call sites for inAnnexSafe and it's fiddly.
2015-10-08 14:29:35 -04:00
Joey Hess
2fb3722ce9 Do verification of checksums of annex objects downloaded from remotes.
* When annex objects are received into git repositories, their checksums are
  verified then too.
* To get the old, faster, behavior of not verifying checksums, set
  annex.verify=false, or remote.<name>.annex-verify=false.
* setkey, rekey: These commands also now verify that the provided file
  matches the key, unless annex.verify=false.
* reinject: Already verified content; this can now be disabled by
  setting annex.verify=false.

recvkey and reinject already did verification, so removed now duplicate
code from them. fsck still does its own verification, which is ok since it
does not use getViaTmp, so verification doesn't happen twice when using fsck
--from.
2015-10-01 15:56:39 -04:00
Joey Hess
6a4f2087be finished converting all the main options 2015-07-10 13:23:06 -04:00
Joey Hess
a7f58634b8 wip 2015-07-09 16:05:45 -04:00
Joey Hess
8ad927dbc6 converted copy and move
Got a little tricky..
2015-07-09 15:23:14 -04:00
Joey Hess
6e5c1f8db3 convert all commands to work with optparse-applicative
Still no options though.
2015-07-08 15:08:02 -04:00
Joey Hess
a2ba701056 started converting to use optparse-applicative
This is a work in progress. It compiles and is able to do basic command
dispatch, including git autocorrection, while using optparse-applicative
for the core commandline parsing.

* Many commands are temporarily disabled before conversion.
* Options are not wired in yet.
* cmdnorepo actions don't work yet.

Also, removed the [Command] list, which was only used in one place.
2015-07-08 13:36:25 -04:00
Joey Hess
61ccf95004 Avoid accumulating transfer failure log files unless the assistant is being used.
Only the assistant uses these, and only the assistant cleans them up, so
make only git annex transferkeys write them,

There is one behavior change from this. If glacier is being used, and a
manual git annex get --from glacier fails because the file isn't available
yet, the assistant will no longer later see that failed transfer file and
retry the get. Hope no-one depended on that old behavior.
2015-05-12 15:53:38 -04:00
Joey Hess
8077ccbd54 get, move, copy, mirror: Concurrent downloads and uploads are now supported!
This works, and seems fairly robust. Clean get of 20 files at -J3. At -J10,
there are some messages about ssh multiplexing, probably due to a race
spinning up the ssh connection cacher. But, it manages to get all the files
ok regardless.

The progress bars are a scrambled mess though, due to bugs in
ascii-progress, which I've already filed. Particularly this one:
https://github.com/yamadapc/haskell-ascii-progress/issues/8
2015-04-10 17:08:07 -04:00
Joey Hess
cd6b62f35e --auto is no longer a global option; only get, drop, and copy accept it.
Not a behavior change unless you were passing it to a command that ignored it.
2015-03-25 17:06:14 -04:00
Joey Hess
8066a1c3cc The file matching options are now only accepted by commands that can actually use them. 2015-02-06 17:16:41 -04:00
Joey Hess
afc5153157 update my email address and homepage url 2015-01-21 12:50:09 -04:00
Joey Hess
59f88558d5 doh't use "def" for command definitions, it conflicts with Data.Default.def 2014-10-14 14:20:10 -04:00
Joey Hess
b61c6bc2ff hlint 2014-10-09 15:46:05 -04:00
Joey Hess
aebcc395ff use types to enforce that removeAnnex can only be called inside lockContent
This fixed one bug where it needed to be and wasn't (in Assistant.Unused).
And also found one place where lockContent was used unnecessarily (by
drop --from remote).

A few other places like uninit probably don't really need to lockContent,
but it doesn't hurt to do call it anyway.

This commit was sponsored by David Wagner.
2014-08-20 20:13:47 -04:00
Joey Hess
e386e26ef2 avoid trying to create a content file in order to lock it
The nice refactoring in ec7dd0446a
highlighted a bug in lockContent -- when the content is not present,
this incorrectly created an empty lock file, using the same filename
as the content file.

This seems like it could result in empty objects, which fsck would detect
and complain about. Both drop and move --to call lockContent, as does
Remote.Git.dropKey -- I think we got lucky and this bug didn't show up
because both all of those only operate on files that are present. So
this bug could only manifest if there was a race, and a file's content
was dropped at just the wrong time, just as another process was about to
drop it. (And then only if the other process's dropping failed, otherwise
it'd delete the empty object file.)

Hmm, move --from also called lockContent. Unnecessarily, since the content
is not being removed from the local annex. In this case, the combination of
the 2 bugs could result in an empty lock file being written, and then if
the download of the content failed, left in the object directory as the
content.

This commit also optimises lockContent, avoiding an unncessary
doesFileExist test and instead just catching the exception that's thrown
when the file doesn't exist.

This commit was sponsored by Justine Lam.
2014-08-20 17:25:30 -04:00
Joey Hess
c784ef4586 unify exception handling into Utility.Exception
Removed old extensible-exceptions, only needed for very old ghc.

Made webdav use Utility.Exception, to work after some changes in DAV's
exception handling.

Removed Annex.Exception. Mostly this was trivial, but note that
tryAnnex is replaced with tryNonAsync and catchAnnex replaced with
catchNonAsync. In theory that could be a behavior change, since the former
caught all exceptions, and the latter don't catch async exceptions.

However, in practice, nothing in the Annex monad uses async exceptions.
Grepping for throwTo and killThread only find stuff in the assistant,
which does not seem related.

Command.Add.undo is changed to accept a SomeException, and things
that use it for rollback now catch non-async exceptions, rather than
only IOExceptions.
2014-08-07 22:03:29 -04:00
Joey Hess
e880d0d22c replace (Key, Backend) with Key
Only fsck and reinject and the test suite used the Backend, and they can
look it up as needed from the Key. This simplifies the code and also speeds
it up.

There is a small behavior change here. Before, all commands would warn when
acting on an annexed file with an unknown backend. Now, only fsck and
reinject show that warning.
2014-04-17 18:03:39 -04:00
Joey Hess
e426fac273 add desktop notifications
Motivation: Hook scripts for nautilus or other file managers
need to provide the user with feedback that a file is being downloaded.

This commit was sponsored by THM Schoemaker.
2014-03-22 14:12:19 -04:00
Joey Hess
4cc34973d9 copy --fast --to remote: Avoid printing anything for files that are already believed to be present on the remote. 2014-03-13 14:51:22 -04:00
Joey Hess
86ffeb73d1 reorganize some files and imports 2014-01-26 16:25:55 -04:00
Joey Hess
3149a62a35 refactor 2014-01-26 15:53:01 -04:00
Joey Hess
d66535f065 global numcopies setting
* numcopies: New command, sets global numcopies value that is seen by all
  clones of a repository.
* The annex.numcopies git config setting is deprecated. Once the numcopies
  command is used to set the global number of copies, any annex.numcopies
  git configs will be ignored.
* assistant: Make the prefs page set the global numcopies.

This global numcopies setting is needed to let preferred content
expressions operate on numcopies.

It's also convenient, because typically if you want git-annex to preserve N
copies of files in a repo, you want it to do that no matter which repo it's
running in. Making it global avoids needing to warn the user about gotchas
involving inconsistent annex.numcopies settings.
(See changes to doc/numcopies.mdwn.)

Added a new variety of git-annex branch log file, that holds only 1 value.
Will probably be useful for other stuff later.

This commit was sponsored by Nicolas Pouillard.
2014-01-20 16:47:56 -04:00
Joey Hess
34c8af74ba fix inversion of control in CommandSeek (no behavior changes)
I've been disliking how the command seek actions were written for some
time, with their inversion of control and ugly workarounds.

The last straw to fix it was sync --content, which didn't fit the
Annex [CommandStart] interface well at all. I have not yet made it take
advantage of the changed interface though.

The crucial change, and probably why I didn't do it this way from the
beginning, is to make each CommandStart action be run with exceptions
caught, and if it fails, increment a failure counter in annex state.
So I finally remove the very first code I wrote for git-annex, which
was before I had exception handling in the Annex monad, and so ran outside
that monad, passing state explicitly as it ran each CommandStart action.

This was a real slog from 1 to 5 am.

Test suite passes.

Memory usage is lower than before, sometimes by a couple of megabytes, and
remains constant, even when running in a large repo, and even when
repeatedly failing and incrementing the error counter. So no accidental
laziness space leaks.

Wall clock speed is identical, even in large repos.

This commit was sponsored by an anonymous bitcoiner.
2014-01-20 04:57:36 -04:00
Joey Hess
66285ca3d1 copy --from, get --from: When --force is used, ignore the location log and always try to get the file from the remote. 2013-12-02 15:41:20 -04:00
Joey Hess
b405295aee hlint
test suite still passes
2013-09-25 03:09:06 -04:00
Joey Hess
0f921307e7 mirror: New command, makes two repositories contain the same set of files.
This is a simple approach for setting up a mirroring repository.

It will work with any type of remotes.

Mirror --from is more expensive than mirror --to in general.
OTOH, mirror --from will get the file from any remote that has it, not only
the named mirror remote. And if the named mirror remote is not the fastest
available remote with a file, that can speed things up.

It would be possible to make the assistant or watch command do a more
dynamic mirroring, that didn't need to scan every time.
2013-08-20 15:46:35 -04:00
Joey Hess
7a7e426352 moved AssociatedFile definition 2013-07-04 02:36:02 -04:00
Joey Hess
04d07f2c1f --unused: New switch that makes git-annex operate on all data found by the last run of git annex unused. Supported by fsck, get, move, copy. 2013-07-03 15:26:59 -04:00
Joey Hess
b337a8b4c7 --all for get, move, and copy 2013-07-03 13:55:50 -04:00
Joey Hess
9e11699c76 connect existing meters to the transfer log for downloads
Most remotes have meters in their implementations of retrieveKeyFile
already. Simply hooking these up to the transfer log makes that information
available. Easy peasy.

This is particularly valuable information for encrypted remotes, which
otherwise bypass the assistant's polling of temp files, and so don't have
good progress bars yet.

Still some work to do here (see progressbars.mdwn changes), but this
is entirely an improvement from the lack of progress bars for encrypted
downloads.
2013-04-11 17:32:31 -04:00
Joey Hess
cfd3b16fe1 add section metadata to all commands
Not yet used .. mindless train work.
2013-03-24 18:28:21 -04:00
Joey Hess
921f29c004 two types of byName
Clean up from 9769235d6b.
In some cases, looking up a remote by name even though it has no UUID is
desirable. This includes git annex sync, which can operate on remotes
without an annex, and XMPP pairing, which runs addRemote (with calls
byName) before the UUID of the XMPP remote has been configured in git.
2013-03-05 15:43:56 -04:00
Joey Hess
3b92c279e8 copy: Update location log when no copy was performed, if the location log was out of date. 2013-02-26 14:39:37 -04:00
Joey Hess
397082013a proper fix for dropunused
Now getKeysPresent checks that the key's content, not only its directory,
exists. In direct mode, the inode cache file is used as a standin for the
content.

removeAnnex always removes the inode cache file, and drop and move --from
always call removeAnnex, even if the object does not seem to be inAnnex,
to ensure it's always deleted.
2013-02-15 17:58:49 -04:00
Joey Hess
b68eee625f More commands work in direct mode repositories: find, whereis, move, copy, drop, log.
These started working, for free, once lookupFile supported direct mode.

yay!!
2013-01-05 17:17:04 -04:00
Joey Hess
2ce736ac50 block all commands that don't work in direct mode
I left status working in direct mode, although it doesn't show correct
stats for known annex keys.
2012-12-29 14:28:19 -04:00
Joey Hess
ebd576ebcb where indentation 2012-11-12 01:05:04 -04:00
Joey Hess
40df26757a copy: avoid updating location log when no copy is performed
git annex copy --to remote often does not need to copy a file,
but it was still updating the location log in this case.
2012-09-24 19:58:34 -04:00
Joey Hess
df07ccf404 make the assistant retry failed transfers
When a transfer fails, the progress info can be used to intelligently
retry it. If the transfer managed to make some progress, but did not
fully complete, then there's a good chance that a retry will finish it
(or at least make more progress).
2012-09-23 13:27:13 -04:00
Joey Hess
715a9a2f8e keep logs of failed transfers, and requeue them when doing a non-full scan
of a remote
2012-08-23 15:24:15 -04:00
Joey Hess
7225c2bfc0 record transfer information on local git remotes
In order to record a semi-useful filename associated with the key,
this required plumbing the filename all the way through to the remotes'
storeKey and retrieveKeyFile.

Note that there is potential for deadlock here, narrowly avoided.
Suppose the repos are A and B. A sends file foo to B, and at the same
time, B gets file foo from A. So, A locks its upload transfer info file,
and then locks B's download transfer info file. At the same time,
B is taking the two locks in the opposite order. This is only not a
deadlock because the lock code does not wait, and aborts. So one of A or
B's transfers will be aborted and the other transfer will continue.
Whew!
2012-07-01 17:15:11 -04:00
Joey Hess
e5fd8b67b7 get, move, copy: Now refuse to do anything when the requested file transfer is already in progress by another process.
Note this is per-remote, so trying to get the same file from multiple
remotes can still let duplicate downloads run. (And uploading the same file
to multiple remotes is not duplicate at all of course.)

get, move, and copy are the only git-annex subcommands that transfer
files, but there's still git-annex-shell recvkey and sendkey to deal with too.

I considered modifying retrieveKeyFile or getViaTmp, but they are called
by other code that does not involve expensive file transfers (migrate)
or that does file transfers that should not be checked by this (fsck --from).
2012-07-01 17:15:11 -04:00
Joey Hess
942d8f7298 hlint 2012-06-12 11:32:06 -04:00
Joey Hess
60ab3d84e1 added ifM and nuked 11 lines of code
no behavior changes
2012-03-14 17:43:34 -04:00
Joey Hess
2fd294d06f move --from, copy --from: 10 times faster scanning remote on local disk
Rather than go through the location log to see which files are present on
the remote, it simply looks at the disk contents directly.

I benchmarked this speeding up scanning 834 files, from an annex on my
phone's SSD, from 11.39 seconds to 1.31 seconds. (No files actually moved.)

Also benchmarked 8139 files, from an annex on spinning storage,
speeding up from 103.17 to 13.39 seconds.

Note that benchmarking with an encrypted annex on flash actually showed a
minor slowdown with this optimisation -- from 13.93 to 14.50 seconds. Seems
the overhead of doing the crypto needed to get the filenames to directly
check can be higher than the overhead of looking up data in the location
log. (Which says good things about how well the location log and git have
been optimised!) It *may* make sense to make encrypted local remotes not
have hasKeyCheap set; further benchmarking is called for.
2012-02-26 14:59:48 -04:00
Joey Hess
61dbad505d fsck --from remote --fast
Avoids expensive file transfers, at the expense of checking file size
and/or contents.

Required some reworking of the remote code.
2012-01-20 13:23:11 -04:00
Joey Hess
06b0cb6224 add tmp flag parameter to retrieveKeyFile 2012-01-19 16:07:36 -04:00