This allows lockContentShared to lock content for eg, 10 minutes and
if the process then gets terminated before it can unlock, the content
will remain locked for that amount of time.
The Windows implementation is not yet tested.
In P2P.Annex, a duration of 10 minutes is used. This way, when p2pstdio
or remotedaemon is serving the P2P protocol, and is asked to
LOCKCONTENT, and that process gets killed, the content will not be
subject to deletion. This is not a perfect solution to
doc/todo/P2P_locking_connection_drop_safety.mdwn yet, but it gets most
of the way there, without needing any P2P protocol changes.
This is only done in v10 and higher repositories (or on Windows). It
might be possible to backport it to v8 or earlier, but it would
complicate locking even further, and without a separate lock file, might
be hard. I think that by the time this fix reaches a given user, they
will probably have been running git-annex 10.x long enough that their v8
repositories will have upgraded to v10 after the 1 year wait. And it's
not as if git-annex hasn't already been subject to this problem (though
I have not heard of any data loss caused by it) for 6 years already, so
waiting another fraction of a year on top of however long it takes this
fix to reach users is unlikely to be a problem.
The error message is not displayed to the use, but this mirrors the
behavior when a regular get from a special remote fails. At least now
there is not a protocol error.
Now that storeKey can have a different object file passed to it, this
complication is not needed. This avoids a lot of strange situations,
and will also be needed if streaming is eventually supported.
Still needs some work.
The reason that the waitv is necessary is because without it,
runNet loops back around and reads the next protocol message. But it's
not finished reading the whole bytestring yet, and so it reads some part
of it.
Working, but lots of room for improvement...
Without streaming, so there is a delay before download begins as the
file is retreived from the special remote.
And when resuming it retrieves the whole file from the special remote
*again*.
Also, if the special remote throws an exception, currently it
shows as "protocol error".
This allows an error message from a proxied special remote to be
displayed to the client.
In the case where removal from several nodes of a cluster fails,
there can be several errors. What to do? I decided to only show
the first error to the user. Probably in this case the user is not in a
position to do anything about an error message, so best keep it simple.
If the problem with the first node is fixed, they'll see the error from
the next node.
That error is now rethrown on the client, so it will be displayed.
For example:
$ git-annex fsck x --fast --from AMS-dir
fsck x (special remote reports: directory /home/joey/tmp/bench2/dir is not accessible) failed
No protocol version check is needed. Because in order to talk to a
proxied special remote, the client has to be running the upcoming
git-annex release. Which has this fix in it.
This is early, but already working for CHECKPRESENT.
However, when the special remote throws an exception on checkPresent,
this happens:
[2024-06-28 13:22:18.520884287] (P2P.IO) [ThreadId 4] P2P > ERROR directory /home/joey/tmp/bench2/dir is not accessible
[2024-06-28 13:22:18.521053135] (P2P.IO) [ThreadId 4] P2P < ERROR expected SUCCESS or FAILURE
git-annex: client error: expected SUCCESS or FAILURE
(fixing location log) p2pstdio: 1 failed
** Based on the location log, x
** was expected to be present, but its content is missing.
failed
Before it was using a node that might have had a higher cost.
Also threw in a random selection from amoung the low cost nodes. Of
course this is a poor excuse for load balancing, but it's better than
nothing. Most of the time...
The VIA extension is still needed to avoid some extra work and ugly
messages, but this is enough that it actually works.
This filters out the RemoteSides that are a proxied connection via a
remote gateway to the cluster.
The VIA extension will not filter those out, but will send VIA to them
on connect, which will cause the ones that are accessed via the listed
gateways to be filtered out.
Except when no nodes want a file, it has to be stored somewhere, so
store it on all. Which is not really desirable, but neither is having to
pick one.
ProtoAssociatedFile deserialization is rather broken, and this could
possibly affect preferred content expressions that match on filenames.
The inability to roundtrip whitespace like tabs and newlines through is
not a problem because preferred content expressions can't be written
that match on whitespace such as a tab. For example:
joey@darkstar:~/tmp/bench/z>git-annex wanted origin-node2 'exclude=*CTRL-VTab*'
wanted origin-node2
git-annex: Parse error: Parse failure: near "*"
But, the filtering of control characters could perhaps be a problem. I think
that filtering is now obsolete, git-annex has comprehensive filtering of
control characters when displaying filenames, that happens at a higher level.
However, I don't want to risk a security hole so am leaving in that filtering
in ProtoAssociatedFile deserialization for now.
If the location log says all nodes contain content, pass in all nodes,
rather than none.
The location log can be wrong. While it's good to avoid unncessessary
connections to nodes that already contain a key, it would be bad to
refuse to accept an upload at all when the location log is wrong.
Also, passing in no nodes leaves the proxy in an untenable state. It
can't proxy to no nodes. So it closes the connection. Passing in all
nodes means it has to do the work to connect to all of them, and see
that they say they already have the content, and then it can tell the
client that.
Avoid `git-annex sync --content` etc from operating on cluster nodes by default
since syncing with a cluster implicitly syncs with its nodes. This avoids a
lot of unncessary work when a cluster has a lot of nodes just in checking
if each node's preferred content is satisfied. And it avoids content
being sent to nodes individually, so instead syncing with clusters always
fanout uploads to nodes.
The downside is that there are situations where a cluster's preferred content
settings can be met, but those of its nodes are not. Or where a node does not
contain a key, but the cluster does, and there are not enough copies of the key
yet, so it would be desirable the send it there. I think that's an acceptable
tradeoff. These kind of situations are ones where the cluster itself should
probably be responsible for copying content to the node. Which it can do much
less expensively than a client can. Part of the balanced preferred content
design that I will be working on in a couple of months involves rebalancing
clusters, so I expect to revisit this.
The use of annex-sync config does allow running git-annex sync with a specific
node, or nodes, and it will sync with it. And it's also possible to set
annex-sync git configs to make it sync with a node by default. (Although that
will require setting up an explicit git remote for the node rather than relying
on the proxied remote.)
Logs.Cluster.Basic is needed because Remote.Git cannot import Logs.Cluster
due to a cycle. And the Annex.Startup load of clusters happens
too late for Remote.Git to use that. This does mean one redundant load
of the cluster log, though only when there is a proxy.
Dropping from a cluster drops from every node of the cluster.
Including nodes that the cluster does not think have the content.
This is different from GET and CHECKPRESENT, which do trust the
cluster's location log. The difference is that removing from a cluster
should make 100% the content is gone from every node. So doing extra
work is ok. Compare with CHECKPRESENT where checking every node could
make it very expensive, and the worst that can happen in a false
negative is extra work being done.
Extended the P2P protocol with FAILURE-PLUS to handle the case where a
drop from one node succeeds, but a drop from another node fails. In that
case the entire cluster drop has failed.
Note that SUCCESS-PLUS is returned when dropping from a proxied remote
that is not a cluster, when the protocol version supports it. This is
because P2P.Proxy does not know when it's proxying for a single node
cluster vs for a remote that is not a cluster.
This is obviously necessary in order for dropping from a cluster to be able to
drop from all nodes.
It also avoids violating numcopies when a cluster node is a special remote.
If it were used in the drop proof, nothing would prevent the cluster from
dropping from it.
I had a transfer of 3 files fail like this:
git-annex: transferrer protocol error: "(recording state in git...)"
The remote had stalldetection enabled, although I didn't see it stall.
So git-annex transferrer would have been started up. I guess that
one of these new git-annex branch reads, that happens early, caused
that message due to perhaps an uncommitted git-annex branch change.
Since the transferrer speaks a protocol over stdout, it needs to be
prevented from outputting other messages to stdout. Interestingly,
startupAnnex is run after prepRunCommand, so if a command requests quiet
output it would already be quiet. But the transferrer does not, instead
it calls Annex.setOutput SerializedOutput in its start action.
Client side support for SUCCESS-PLUS and ALREADY-HAVE-PLUS
is complete, when a PUT stores to additional repositories
than the expected on, the location log is updated with the
additional UUIDs that contain the content.
Started implementing PUT fanout to multiple remotes for clusters.
It is untested, and I fear fencepost errors in the relative
offset calculations. And it is missing proxying for the protocol
after DATA.
This assumes that the proxy for a cluster has up-to-date location
logs. If it didn't, it might proxy the checkpresent to a node that no
longer has the content, while some other node still does, and so
it would incorrectly appear that the cluster no longer contains the
content.
Since cluster UUIDs are not stored to location logs,
git-annex fsck --fast when claiming to fix a location log when
that occurred would not cause any problems. And presumably the location
tracking would later get sorted out.
At least usually, changes to the content of nodes goes via the proxy,
and it will update its location logs, so they will be accurate. However,
if there were multiple proxies to the same cluster, or nodes were
accessed directly (or via proxy to the node and not the cluster),
the proxy's location log could certainly be wrong.
(The location log access for GET has the same issues.)
Handled limitCopies, as well as everything using fromNumCopies and
fromMinCopies.
This should be everything, probably.
Note that, git-annex info displays a count of repositories, which still
includes cluster. I think that's ok. It would be possible to filter out
clusters there, but to the user they're pretty much just another
repository. The numcopies displayed by eg `git-annex info .` does not
include clusters.
This is to avoid inserting a cluster uuid into the location log when
only dead nodes in the cluster contain the content of a key.
One reason why this is necessary is Remote.keyLocations, which excludes
dead repositories from the list. But there are probably many more.
Implementing this was challenging, because Logs.Location importing
Logs.Cluster which imports Logs.Trust which imports Remote.List resulted
in an import cycle through several other modules.
Resorted to making Logs.Location not import Logs.Cluster, and instead
it assumes that Annex.clusters gets populated when necessary before it's
called.
That's done in Annex.Startup, which is run by the git-annex command
(but not other commands) at early startup in initialized repos. Or,
is run after initialization.
Note that is Remote.Git, it is unable to import Annex.Startup, because
Remote.Git importing Logs.Cluster leads the the same import cycle.
So ensureInitialized is not passed annexStartup in there.
Other commands, like git-annex-shell currently don't run annexStartup
either.
So there are cases where Logs.Location will not see clusters. So it won't add
any cluster UUIDs when loading the log. That's ok, the only reason to do
that is to make display of where objects are located include clusters,
and to make commands like git-annex get --from treat keys as being located
in a cluster. git-annex-shell certainly does not do anything like that,
and I'm pretty sure Remote.Git (and callers to Remote.Git.onLocalRepo)
don't either.
Since the cluster UUID is inserted into the location log when the
location log lists a node as containing content.
Also avoid trying to lock content on cluster remotes. The cluster nodes
are also proxied, so that content can be locked on individual nodes, and
locking content on a cluster as a whole probably won't be implemented.
And made git-annex whereis use numcopies machinery for displaying its
count, so it won't count cluster UUIDs redundantly to nodes.
Other commands, like git-annex info that also display numcopies
information already used the numcopies machinery.
There is more to be done, fromNumCopies is sometimes used to get a
number that is compared with a list of UUIDs. And limitCopies doesn't
use numcopies machinery.
Memory use is small and constant; receiveBytes returns a lazy bytestring
and it does stream.
Comparing speed of a get of a 500 mb file over proxy from origin-origin,
vs from the same remote over a direct ssh:
joey@darkstar:~/tmp/bench/client>/usr/bin/time git-annex get bigfile --from origin-origin
get bigfile (from origin-origin...)
ok
(recording state in git...)
1.89user 0.67system 0:10.79elapsed 23%CPU (0avgtext+0avgdata 68716maxresident)k
0inputs+984320outputs (0major+10779minor)pagefaults 0swaps
joey@darkstar:~/tmp/bench/client>/usr/bin/time git-annex get bigfile --from direct-ssh
get bigfile (from direct-ssh...)
ok
1.79user 0.63system 0:10.49elapsed 23%CPU (0avgtext+0avgdata 65776maxresident)k
0inputs+1024312outputs (0major+9773minor)pagefaults 0swaps
So the proxy doesn't add much overhead even when run on the same machine as
the client and remote.
Still, piping receiveBytes into sendBytes like this does suggest that the proxy
could be made to use less CPU resouces by using `sendfile()`.
getRepoUUID looks at that, and was seeing the annex.uuid of the proxy.
Which caused it to unncessarily set the git config. Probably also would
have led to other problems.
They could be missing due to an interrupted git-annex at just the wrong
time during a prior graft, after which the tree objects got garbage
collected.
Or they could be missing because of manual messing with the git-annex
branch, eg resetting it to back before the graft commit.
Sponsored-by: Dartmouth College's OpenNeuro project
Fix a bug where interrupting git-annex while it is updating the git-annex
branch could lead to git fsck complaining about missing tree objects.
Interrupting git-annex while regraftexports is running in a transition
that is forgetting git-annex branch history would leave the
repository with a git-annex branch that did not contain the tree shas
listed in export.log. That lets those trees be garbage collected.
A subsequent run of the same transition then regrafts the trees listed
in export.log into the git-annex branch. But those trees have been lost.
Note that both sides of `if neednewlocalbranch` are atomic now. I had
thought only the True side needed to be, but I do think there may be
cases where the False side needs to be as well.
Sponsored-by: Dartmouth College's OpenNeuro project
Untested, but this should be close to working. The proxied remotes have
the same url but a different uuid. When talking to current
git-annex-shell, it will fail due to a uuid mismatch. Once it supports
proxies, it will know that the presented uuid is for a remote that it
proxies for.
The check for any git config settings for a remote with the same name as
the proxied remote is there for several reasons. One is security:
Writing a name to the proxy log should not cause changes to
how an existing, configured git remote operates in a different clone of
the repo.
It's possible that the user has been using a proxied remote, and decides
to set a git config for it. We can't tell the difference between that
scenario and an evil remote trying to eg, intercept a file upload
by replacing their remote with a proxied remote.
Also, if the user sets some git config, does it override the config
inherited from the proxy remote? Seems a difficult question. Luckily,
the above means we don't need to think through it.
This does mean though, that in order for a user to change the config of
a proxy remote, they have to manually set its annex-uuid and url, as
well as the config they want to change. They may also have to set any of
the inherited configs that they were relying on.
When building an adjusted unlocked branch, make pointer files executable
when the annex object file is executable.
This slows down git-annex adjust --unlock/--unlock-present by needing to
stat all annex object files in the tree. Probably not a significant
slowdown compared to other work they do, but I have not benchmarked.
I chose to leave git-annex adjust --unlock marked as stable, even though
get or drop of an object file can change whether it would make the pointer
file executable. Partly because making it unstable would slow down
re-adjustment, and partly for symmetry with the handling of an unlocked
pointer file that is executable when the content is dropped, which does not
remove its execute bit.
Implemented alternateJournal, which git-remote-annex
uses to avoid any writes to the git-annex branch while setting up
a special remote from an annex:: url.
That prevents the remote.log from being overwritten with the special
remote configuration from the url, which might not be 100% the same as
the existing special remote configuration.
And it prevents an overwrite deleting of other stuff that was
already in the remote.log.
Also, when the branch was created by git-remote-annex, only delete it
at the end if nothing else has been written to it by another command.
This fixes the race condition described in
797f27ab05, where git-remote-annex
set up the branch and git-annex init and other commands were
run at the same time and their writes to the branch were lost.
Also support using annex:: urls that specify the whole special remote
config.
Both of these cases need a special remote to be initialized enough to
use it, which means writing to .git/config but not to the git-annex
branch. When cloning, the remote is left set up in .git/config,
so further use of it, by git-annex or git-remote-annex will work. When
using git with an annex:: url, a temporary remote is written to
.git/config, but then removed at the end.
While that's a little bit ugly, the fact is that the Remote interface
expects that it's ok to set git configs of the remote that is being
initialized. And it's nowhere near as ugly as the alternative of making
a temporary git repository and initializing the special remote in there.
Cloning from a repository that does not contain a git-annex branch and
then later running git-annex init is currently broken, although I've
gotten most of the way there to supporting it.
See cleanupInitialization FIXME.
Special shout out to git clone for running gitremote-helpers with
GIT_DIR set, but not in the git repository and with GIT_WORK_TREE not
set. Resulting in needing the fixupRepo hack.
Sponsored-by: unqueued on Patreon
Test suite passes this time. When committing the adjusted branch, use
the old method to make a message that old git-annex can consume. Also
made the code accept the new message, so that eventually
commitTreeExactMessage can be removed.
Sponsored-by: Kevin Mueller on Patreon
This reverts commit cee12f6a2f.
This commit broke git-annex init run in a repo that was cloned from a
repo with an adjusted branch checked out.
The problem is that findAdjustingCommit was not able to identify the
commit that created the adjusted branch. It seems that there is an extra
"\n" at the end of the commit message that it does not expect.
Since backwards compatability needs to be maintained, cannot just make
findAdjustingCommit accept it with the "\n". Will have to instead
have one commitTree variant that uses the old method, and use it for
adjusted branch committing.
sync, assist, import: Allow -m option to be specified multiple times, to
provide additional paragraphs for the commit message.
The option parser didn't allow multiple -m before, so there is no risk of
behavior change breaking something that was for some reason using multiple
-m already.
Pass through to git commands, so that the method used to assemble the
paragrahs is whatever git does. Which might conceivably change in the
future.
Note that git commit-tree has supported -m since git 1.7.7. commitTree
was probably not using it since it predates that version. Since the
configure script prevents building git-annex with git older than 2.1,
there is no risk that it's not supported now.
Sponsored-by: Nicholas Golder-Manning on Patreon
