Also for dropping objects in direct mode.
Checking presence reliably needs a cache of mtime, size, and inode.
This way, if a file is modified, keys that point to it are no longer
present.
Also, the code for restoring the symlink when removing objects is
unnecessarily messy. calcGitLink was generating links starting with
"../../remote/.git/", when running "git annex move --from remote".
I put in a workaround, but calcGitLink should probably be fixed.
There is not yet support for getting objects from repositories in direct
mode; it still looks for content in .git/annex/objects, and there's no
once place I can change to fix that.
Also, getting objects from direct mode repositories is problematic since
the can be changed while the object is being transferred. It probably needs
to quarantine it first.
The benefit of using a compatable directory structure does not outweigh the
cost in complexity of handling the multiple locations content can be stored
in directory special remotes. And this also allows doing away with the parent
directories, which can't be made unwritable in DAV, so have no benefit
there. This will save 2 http calls per file store.
But, kept the directory hashing, just in case.
Incomplete; I need to finish parsing and saving. This will also be used
for editing transfer control expresssions.
Removed the group display from the status output, I didn't really
like that format, and vicfg can be used to see as well as edit rempository
group membership.
Branch.get is not able to see changes that have been staged to the index
but not committed. This is a limitation of git cat-file --batch; when
reading from the index, as opposed to from a branch, it does not notice
changes made after the first time it reads the index.
So, had to revert the changes made in 1f73db3469
to make annex.alwayscommit=false stage changes.
Also, ensure that Branch.change and Branch.get always see changes
at all points during a commit, by not deleting journal files when
staging to the index. Delete them only after committing the branch.
Before, there was a race during commits where a different git-annex
could see out-of-date info from the branch while a commit was in progress.
That's also done when updating the branch to merge in remote branches.
In the case where the local git-annex branch has had changes pushed into it
that are not yet reflected in the index, and there are journalled changes
as well, a merge commit has to be done.
This commit includes a paydown on technical debt incurred two years ago,
when I didn't know that it was bad to make custom Read and Show instances
for types. As the routes need Read and Show for Transfer, which includes a
Key, and deriving my own Read instance of key was not practical,
I had to finally clean that up.
So the compact Key read and show functions are now file2key and key2file,
and Read and Show are now derived instances.
Changed all code that used the old instances, compiler checked.
(There were a few places, particularly in Command.Unused, and the test
suite where the Show instance continue to be used for legitimate
comparisons; ie show key_x == show key_y (though really in a bloom filter))
Baked into the code was an assumption that a repository's git directory
could be determined by adding ".git" to its work tree (or nothing for bare
repos). That fails when core.worktree, or GIT_DIR and GIT_WORK_TREE are
used to separate the two.
This was attacked at the type level, by storing the gitdir and worktree
separately, so Nothing for the worktree means a bare repo.
A complication arose because we don't learn where a repository is bare
until its configuration is read. So another Location type handles
repositories that have not had their config read yet. I am not entirely
happy with this being a Location type, rather than representing them
entirely separate from the Git type. The new code is not worse than the
old, but better types could enforce more safety.
Added support for core.worktree. Overriding it with -c isn't supported
because it's not really clear what to do if a git repo's config is read, is
not bare, and is then overridden to bare. What is the right git directory
in this case? I will worry about this if/when someone has a use case for
overriding core.worktree with -c. (See Git.Config.updateLocation)
Also removed and renamed some functions like gitDir and workTree that
misused git's terminology.
One minor regression is known: git annex add in a bare repository does not
print a nice error message, but runs git ls-files in a way that fails
earlier with a less nice error message. This is because before --work-tree
was always passed to git commands, even in a bare repo, while now it's not.
Fix Key directory hash calculation code to behave as it did before version
3.20120227 when a key contains non-ascii.
The hash directories for a given Key are based on its md5sum.
Prior to ghc 7.4, Keys contained raw, undecoded bytes, so the md5sum was
taken of each byte in turn. With the ghc 7.4 filename encoding change,
keys contains decoded unicode characters (possibly with surrigates for
undecodable bytes). This changes the result of the md5sum, since the md5sum
used is pure haskell and supports unicode. And that won't do, as git-annex
will start looking in a different hash directory for the content of a key.
The surrigates are particularly bad, since that's essentially a ghc
implementation detail, so could change again at any time. Also, changing
the locale changes how the bytes are decoded, which can also change
the md5sum.
Symptoms would include things like:
* git annex fsck would complain that no copies existed of a file,
despite its symlink pointing to the content that was locally present
* git annex fix would change the symlink to use the wrong hash
directory.
Only WORM backend is likely to have been affected, since only it tends
to include much filename data (SHA1E could in theory also be affected).
I have not tried to support the hash directories used by git-annex versions
3.20120227 to 3.20120308, so things added with those versions with WORM
will require manual fixups. Sorry for the inconvenience!
Locking is used, so that, if there are multiple git-annex processes
using a remote concurrently, the stop hook is only run by the last
process that uses it.
Now changes are staged into the branch's index, but not committed,
which avoids growing a large journal. And sync and merge always
explicitly commit, ensuring that even when they do nothing else,
they commit the staged changes.
Added a flag file to indicate that the branch's journal contains
uncommitted changes. (Could use git ls-files, but don't want to run
that every time.)
In the future, this ability to have uncommitted changes staged in the
journal might be used on remotes after a series of oneshot commands.
Ssh connection caching is now enabled automatically by git-annex. Only one
ssh connection is made to each host per git-annex run, which can speed some
things up a lot, as well as avoiding repeated password prompts. Concurrent
git-annex processes also share ssh connections. Cached ssh connections are
shut down when git-annex exits.
Note: The rsync special remote does not yet participate in the ssh
connection caching.
The last branch ref that the index was updated to is stored in
.git/annex/index.lck, and the index only updated when the current
branch ref differs.
(The .lck file should later be used for locking too.)
Some more optimization is still needed, since there is some redundancy in
calls to git show-ref.
Directory special remotes will now always store keys in the lowercase name,
which avoids the complication of catching failures to create the mixed case
name.
Git remotes using http will now try the lowercase name first.
When storing content in bare repositories, use the hashDirLower
directories. Bare repositories can be on USB drives, which might
use the FAT filesystem, and fall afoul of recent bugs in linux's handling
of mixed case on FAT. Using hashDirLower avoids that.
Supporting multiple directory hash types will allow converting to a
different one, without a flag day.
gitAnnexLocation now checks which of the possible locations have a file.
This means more statting of files. Several places currently use
gitAnnexLocation and immediately check if the returned file exists;
those need to be optimised.
Many functions took the repo as their first parameter. Changing it
consistently to be the last parameter allows doing some useful things with
currying, that reduce boilerplate.
In particular, g <- gitRepo is almost never needed now, instead
use inRepo to run an IO action in the repo, and fromRepo to get
a value from the repo.
This also provides more opportunities to use monadic and applicative
combinators.
git is slow when the index file is large and has to be rewritten each time
a file is changed. To speed this up, added a journal where changes are
recorded before being fed into the index file and committed to the
git-annex branch. The entire journal can be fed into git with just 2
commands, and only one write of the index file.
to avoid some issues with git on OSX with the mixed-case directories. No
migration is needed; the old mixed case hash directories are still read;
new information is written to the new directories.
This means there can be 1024 subdirs, each with up to 1024 sub-subdirs.
So with hundreds of millions of annexed objects, each leaf directory will
have only a few files on average.
It compiles. It sorta works. Several subcommands are FIXME marked and
broken, because things that used to accept separate --backend and --key
params need to be changed to accept just a --key that encodes all the key
info, now that there is metadata in keys.
This relies on git-annex's behavior of reading the config of local repos.
That allows repoIsLocalBare to examine the git config for core.bare.
Hopefully, gitAnnexLocation, gitAnnexDir, and gitAnnexObjectDir
are only used on local repos. But, I have not audited fully, since
they're probably not (see for example copyToRemote). And so,
the functions fall back to their old non-bare-aware behavior for
non-local repos.
* Improved temp file handling. Transfers of content can now be resumed
from temp files later; the resume does not have to be the immediate
next git-annex run.
* unused: Include partially transferred content in the list.
Rename Locations functions for better consitency, and make their values
more consistent too.
Used </> rather than manually building paths. There are still more places
that manually do so, but are tricky, due to the behavior of </> when
the second FilePath is absolute. So I only changed places where
it obviously was relative.
* fsck: Check if annex.numcopies is satisfied.
* fsck: Verify the sha1 of files when the SHA1 backend is used.
* fsck: Verify the size of files when the WORM backend is used.
* fsck: Allow specifying individual files to fsk if fscking everything
is not desired.
* fsck: Fix bug, introduced in 0.04, in detection of unused data.
