git-annex/Git/Repair.hs

{- git repository recovery
 -
 - Copyright 2013 Joey Hess <joey@kitenet.net>
 -
 - Licensed under the GNU GPL version 3 or higher.
 -}

module Git.Repair (
	runRepair,
	runRepairOf,
	successfulRepair,
	cleanCorruptObjects,
	retrieveMissingObjects,
	resetLocalBranches,
	removeTrackingBranches,
	checkIndex,
	missingIndex,
	nukeIndex,
	emptyGoodCommits,
) where

import Common
import Git
import Git.Command
import Git.Objects
import Git.Sha
import Git.Types
import Git.Fsck
import qualified Git.Config as Config
import qualified Git.Construct as Construct
import qualified Git.LsTree as LsTree
import qualified Git.LsFiles as LsFiles
import qualified Git.Ref as Ref
import qualified Git.RefLog as RefLog
import qualified Git.UpdateIndex as UpdateIndex
import qualified Git.Branch as Branch
import Utility.Tmp
import Utility.Rsync

import qualified Data.Set as S
import qualified Data.ByteString.Lazy as L
import Data.Tuple.Utils

{- Given a set of bad objects found by git fsck, removes all
 - corrupt objects, and returns a list of missing objects,
 - which need to be found elsewhere to finish recovery.
 -
 - Since git fsck may crash on corrupt objects, and so not
 - report the full set of corrupt or missing objects,
 - this removes corrupt objects, and re-runs fsck, until it
 - stabalizes.
 -
 - To remove corrupt objects, unpack all packs, and remove the packs
 - (to handle corrupt packs), and remove loose object files.
 -}
cleanCorruptObjects :: FsckResults -> Repo -> IO MissingObjects
cleanCorruptObjects mmissing r = check mmissing
  where
	check Nothing = do
		putStrLn "git fsck found a problem but no specific broken objects. Perhaps a corrupt pack file?"
		ifM (explodePacks r)
			( retry S.empty
			, return S.empty
			)
	check (Just bad)
		| S.null bad = return S.empty
		| otherwise = do
			putStrLn $ unwords 
				[ "git fsck found"
				, show (S.size bad)
				, "broken objects."
				]
			exploded <- explodePacks r
			removed <- removeLoose r bad
			if exploded || removed
				then retry bad
				else return bad
	retry oldbad = do
		putStrLn "Re-running git fsck to see if it finds more problems."
		v <- findBroken False r
		case v of
			Nothing -> error $ unwords
				[ "git fsck found a problem, which was not corrected after removing"
				, show (S.size oldbad)
				, "corrupt objects."
				]
			Just newbad -> do
				removed <- removeLoose r newbad
				let s = S.union oldbad newbad
				if not removed || s == oldbad
					then return s
					else retry s

removeLoose :: Repo -> MissingObjects -> IO Bool
removeLoose r s = do
	let fs = map (looseObjectFile r) (S.toList s)
	count <- length <$> filterM doesFileExist fs
	if (count > 0)
		then do
			putStrLn $ unwords
				[ "removing"
				, show count
				, "corrupt loose objects"
				]
			mapM_ nukeFile fs
			return True
		else return False

explodePacks :: Repo -> IO Bool
explodePacks r = do
	packs <- listPackFiles r
	if null packs
		then return False
		else do
			putStrLn "Unpacking all pack files."
			mapM_ go packs
			return True
  where
	go packfile = do
		-- May fail, if pack file is corrupt.
		void $ tryIO $
			pipeWrite [Param "unpack-objects"] r $ \h ->
				L.hPut h =<< L.readFile packfile
		nukeFile packfile
		nukeFile $ packIdxFile packfile

{- Try to retrieve a set of missing objects, from the remotes of a
 - repository. Returns any that could not be retreived.
 - 
 - If another clone of the repository exists locally, which might not be a
 - remote of the repo being repaired, its path can be passed as a reference
 - repository.
 -}
retrieveMissingObjects :: MissingObjects -> Maybe FilePath -> Repo -> IO MissingObjects
retrieveMissingObjects missing referencerepo r
	| S.null missing = return missing
	| otherwise = withTmpDir "tmprepo" $ \tmpdir -> do
		unlessM (boolSystem "git" [Params "init", File tmpdir]) $
			error $ "failed to create temp repository in " ++ tmpdir
		tmpr <- Config.read =<< Construct.fromAbsPath tmpdir
		stillmissing <- pullremotes tmpr (remotes r) fetchrefstags missing
		if S.null stillmissing
			then return stillmissing
			else pullremotes tmpr (remotes r) fetchallrefs stillmissing
  where
	pullremotes tmpr [] fetchrefs stillmissing = case referencerepo of
		Nothing -> return stillmissing
		Just p -> ifM (fetchfrom p fetchrefs tmpr)
			( do
				void $ copyObjects tmpr r
				findMissing (S.toList stillmissing) r
			, return stillmissing
			)
	pullremotes tmpr (rmt:rmts) fetchrefs s
		| S.null s = return s
		| otherwise = do
			putStrLn $ "Trying to recover missing objects from remote " ++ repoDescribe rmt
			ifM (fetchfrom (repoLocation rmt) fetchrefs tmpr)
				( do
					void $ copyObjects tmpr r
					stillmissing <- findMissing (S.toList s) r
					pullremotes tmpr rmts fetchrefs stillmissing
				, do
					putStrLn $ unwords
						[ "failed to fetch from remote"
						, repoDescribe rmt
						, "(will continue without it, but making this remote available may improve recovery)"
						]
					pullremotes tmpr rmts fetchrefs s
				)
	fetchfrom fetchurl ps = runBool $
		[ Param "fetch"
		, Param fetchurl
		, Params "--force --update-head-ok --quiet"
		] ++ ps
	-- fetch refs and tags
	fetchrefstags = [ Param "+refs/heads/*:refs/heads/*", Param "--tags"]
	-- Fetch all available refs (more likely to fail,
	-- as the remote may have refs it refuses to send).
	fetchallrefs = [ Param "+*:*" ]

{- Copies all objects from the src repository to the dest repository.
 - This is done using rsync, so it copies all missing object, and all
 - objects they rely on. -}
copyObjects :: Repo -> Repo -> IO Bool
copyObjects srcr destr = rsync
	[ Param "-qr"
	, File $ addTrailingPathSeparator $ objectsDir srcr
	, File $ addTrailingPathSeparator $ objectsDir destr
	]

{- To deal with missing objects that cannot be recovered, resets any
 - local branches to point to an old commit before the missing
 - objects. Returns all branches that were changed, and deleted.
 -}
resetLocalBranches :: MissingObjects -> GoodCommits -> Repo -> IO ([Branch], [Branch], GoodCommits)
resetLocalBranches missing goodcommits r =
	go [] [] goodcommits =<< filter islocalbranch <$> getAllRefs r
  where
	islocalbranch b = "refs/heads/" `isPrefixOf` show b
	go changed deleted gcs [] = return (changed, deleted, gcs)
	go changed deleted gcs (b:bs) = do
		(mc, gcs') <- findUncorruptedCommit missing gcs b r
		case mc of
			Just c
				| c == b -> go changed deleted gcs' bs
				| otherwise -> do
					reset b c
					go (b:changed) deleted gcs' bs
			Nothing -> do
				nukeBranchRef b r
				go changed (b:deleted) gcs' bs
	reset b c = do
		nukeBranchRef b	r
		void $ runBool
			[ Param "branch"
			, Param (show $ Ref.base b)
			, Param (show c)
			] r

{- To deal with missing objects that cannot be recovered, removes
 - any remote tracking branches that reference them. Returns a list of
 - all removed branches.
 -}
removeTrackingBranches :: MissingObjects -> GoodCommits -> Repo -> IO ([Branch], GoodCommits)
removeTrackingBranches missing goodcommits r =
	go [] goodcommits =<< filter istrackingbranch <$> getAllRefs r
  where
  	istrackingbranch b = "refs/remotes/" `isPrefixOf` show b
	go removed gcs [] = return (removed, gcs)
	go removed gcs (b:bs) = do
		(ok, gcs') <- verifyCommit missing gcs b r
		if ok
			then go removed gcs' bs
			else do
				nukeBranchRef b r
				go (b:removed) gcs' bs

{- Gets all refs, including ones that are corrupt.
 - git show-ref does not output refs to commits that are directly
 - corrupted, so it is not used.
 -}
getAllRefs :: Repo -> IO [Ref]
getAllRefs r = do
	packedrs <- mapMaybe parsePacked . lines
		<$> catchDefaultIO "" (readFile $ packedRefsFile r)
	loosers <- map toref <$> dirContentsRecursive refdir
	return $ packedrs ++ loosers
  where
  	refdir = localGitDir r </> "refs"
	toref = Ref . relPathDirToFile (localGitDir r)

packedRefsFile :: Repo -> FilePath
packedRefsFile r = localGitDir r </> "packed-refs"

parsePacked :: String -> Maybe Ref
parsePacked l = case words l of
	(sha:ref:[])
		| isJust (extractSha sha) -> Just $ Ref ref
	_ -> Nothing

{- git-branch -d cannot be used to remove a branch that is directly
 - pointing to a corrupt commit. However, it's tried first. -}
nukeBranchRef :: Branch -> Repo -> IO ()
nukeBranchRef b r = void $ usegit <||> byhand
  where
	usegit = runBool
		[ Param "branch"
		, Params "-r -d"
		, Param $ show $ Ref.base b
		] r
	byhand = do
		nukeFile $ localGitDir r </> show b
		whenM (doesFileExist packedrefs) $
			withTmpFile "packed-refs" $ \tmp h -> do
				ls <- lines <$> readFile packedrefs
				hPutStr h $ unlines $
					filter (not . skiprefline) ls
				hClose h
				renameFile tmp packedrefs
		return True
	skiprefline l = case parsePacked l of
		Just packedref
			| packedref == b -> True
		_ -> False
	packedrefs = packedRefsFile r

{- Finds the most recent commit to a branch that does not need any
 - of the missing objects. If the input branch is good as-is, returns it.
 - Otherwise, tries to traverse the commits in the branch to find one
 - that is ok. That might fail, if one of them is corrupt, or if an object
 - at the root of the branch is missing. Finally, looks for an old version
 - of the branch from the reflog.
 -}
findUncorruptedCommit :: MissingObjects -> GoodCommits -> Branch -> Repo -> IO (Maybe Sha, GoodCommits)
findUncorruptedCommit missing goodcommits branch r = do
	(ok, goodcommits') <- verifyCommit missing goodcommits branch r
	if ok
		then return (Just branch, goodcommits')
		else do
			(ls, cleanup) <- pipeNullSplit
				[ Param "log"
				, Param "-z"
				, Param "--format=%H"
				, Param (show branch)
				] r
			let branchshas = catMaybes $ map extractSha ls
			reflogshas <- RefLog.get branch r
			-- XXX Could try a bit harder here, and look
			-- for uncorrupted old commits in branches in the
			-- reflog.
			cleanup `after` findfirst goodcommits (branchshas ++ reflogshas)
  where
	findfirst gcs [] = return (Nothing, gcs)
	findfirst gcs (c:cs) = do
		(ok, gcs') <- verifyCommit missing gcs c r
		if ok
			then return (Just c, gcs')
			else findfirst gcs' cs

{- Verifies tha none of the missing objects in the set are used by
 - the commit. Also adds to a set of commit shas that have been verified to
 - be good, which can be passed into subsequent calls to avoid
 - redundant work when eg, chasing down branches to find the first
 - uncorrupted commit. -}
verifyCommit :: MissingObjects -> GoodCommits -> Sha -> Repo -> IO (Bool, GoodCommits)
verifyCommit missing goodcommits commit r
	| checkGoodCommit commit goodcommits = return (True, goodcommits)
	| otherwise = do
		(ls, cleanup) <- pipeNullSplit
			[ Param "log"
			, Param "-z"
			, Param "--format=%H %T"
			, Param (show commit)
			] r
		let committrees = map parse ls
		if any isNothing committrees || null committrees
			then do
				void cleanup
				return (False, goodcommits)
			else do
				let cts = catMaybes committrees
				ifM (cleanup <&&> check cts)
					( return (True, addGoodCommits (map fst cts) goodcommits)
					, return (False, goodcommits)
					)
  where
	parse l = case words l of
		(commitsha:treesha:[]) -> (,)
			<$> extractSha commitsha
			<*> extractSha treesha
		_ -> Nothing
	check [] = return True
	check ((c, t):rest)
		| checkGoodCommit c goodcommits = return True
		| otherwise = verifyTree missing t r <&&> check rest

{- Verifies that a tree is good, including all trees and blobs
 - referenced by it. -}
verifyTree :: MissingObjects -> Sha -> Repo -> IO Bool
verifyTree missing treesha r
	| S.member treesha missing = return False
	| otherwise = do
		(ls, cleanup) <- pipeNullSplit (LsTree.lsTreeParams treesha) r
		let objshas = map (extractSha . LsTree.sha . LsTree.parseLsTree) ls
		if any isNothing objshas || any (`S.member` missing) (catMaybes objshas)
			then do
				void cleanup
				return False
			-- as long as ls-tree succeeded, we're good
			else cleanup

{- Checks that the index file only refers to objects that are not missing,
 - and is not itself corrupt. Note that a missing index file is not
 - considered a problem (repo may be new). -}
checkIndex :: MissingObjects -> Repo -> IO Bool
checkIndex missing r = do
	(bad, _good, cleanup) <- partitionIndex missing r
	if null bad
		then cleanup
		else do
			void cleanup
			return False

missingIndex :: Repo -> IO Bool
missingIndex r = not <$> doesFileExist (localGitDir r </> "index")

partitionIndex :: MissingObjects -> Repo -> IO ([LsFiles.StagedDetails], [LsFiles.StagedDetails], IO Bool)
partitionIndex missing r = do
	(indexcontents, cleanup) <- LsFiles.stagedDetails [repoPath r] r
	let (bad, good) = partition ismissing indexcontents
	return (bad, good, cleanup)
  where
	getblob (_file, Just sha, Just _mode) = Just sha
	getblob _ = Nothing
	ismissing = maybe False (`S.member` missing) . getblob

{- Rewrites the index file, removing from it any files whose blobs are
 - missing. Returns the list of affected files. -}
rewriteIndex :: MissingObjects -> Repo -> IO [FilePath]
rewriteIndex missing r
	| repoIsLocalBare r = return []
	| otherwise = do
		(bad, good, cleanup) <- partitionIndex missing r
		unless (null bad) $ do
			nukeIndex r
			UpdateIndex.streamUpdateIndex r
				=<< (catMaybes <$> mapM reinject good)
		void cleanup
		return $ map fst3 bad
  where
	reinject (file, Just sha, Just mode) = case toBlobType mode of
		Nothing -> return Nothing
		Just blobtype -> Just <$>
			UpdateIndex.stageFile sha blobtype file r
	reinject _ = return Nothing

nukeIndex :: Repo -> IO ()
nukeIndex r = nukeFile (localGitDir r </> "index")

newtype GoodCommits = GoodCommits (S.Set Sha)

emptyGoodCommits :: GoodCommits
emptyGoodCommits = GoodCommits S.empty

checkGoodCommit :: Sha -> GoodCommits -> Bool
checkGoodCommit sha (GoodCommits s) = S.member sha s

addGoodCommits :: [Sha] -> GoodCommits -> GoodCommits
addGoodCommits shas (GoodCommits s) = GoodCommits $
	S.union s (S.fromList shas)

displayList :: [String] -> String -> IO ()
displayList items header
	| null items = return ()
	| otherwise = do
		putStrLn header
		putStr $ unlines $ map (\i -> "\t" ++ i) truncateditems
  where
  	numitems = length items
	truncateditems
		| numitems > 10 = take 10 items ++ ["(and " ++ show (numitems - 10) ++ " more)"]
		| otherwise = items

{- Put it all together. -}
runRepair :: Bool -> Repo -> IO (Bool, MissingObjects, [Branch])
runRepair forced g = do
	putStrLn "Running git fsck ..."
	fsckresult <- findBroken False g
	if foundBroken fsckresult
		then runRepairOf fsckresult forced Nothing g
		else do
			putStrLn "No problems found."
			return (True, S.empty, [])

successfulRepair :: (Bool, MissingObjects, [Branch]) -> Bool
successfulRepair = fst3

runRepairOf :: FsckResults -> Bool -> Maybe FilePath -> Repo -> IO (Bool, MissingObjects, [Branch])
runRepairOf fsckresult forced referencerepo g = do
	missing <- cleanCorruptObjects fsckresult g
	stillmissing <- retrieveMissingObjects missing referencerepo g
	if S.null stillmissing
		then if repoIsLocalBare g
			then successfulfinish stillmissing []
			else ifM (checkIndex stillmissing g)
				( successfulfinish stillmissing []
				, do
					putStrLn "No missing objects found, but the index file is corrupt!"
					if forced
						then corruptedindex
						else needforce stillmissing
				)		
		else do
			putStrLn $ unwords
				[ show (S.size stillmissing)
				, "missing objects could not be recovered!"
				]
			if forced
				then continuerepairs stillmissing
				else unsuccessfulfinish stillmissing
  where
	continuerepairs stillmissing = do
		(remotebranches, goodcommits) <- removeTrackingBranches stillmissing emptyGoodCommits g
		unless (null remotebranches) $
			putStrLn $ unwords
				[ "removed"
				, show (length remotebranches)
				, "remote tracking branches that referred to missing objects"
				]
		(resetbranches, deletedbranches, _) <- resetLocalBranches stillmissing goodcommits g
		displayList (map show resetbranches)
			"Reset these local branches to old versions before the missing objects were committed:"
		displayList (map show deletedbranches)
			"Deleted these local branches, which could not be recovered due to missing objects:"
		deindexedfiles <- rewriteIndex stillmissing g
		displayList deindexedfiles
			"Removed these missing files from the index. You should look at what files are present in your working tree and git add them back to the index when appropriate."
		let modifiedbranches = resetbranches ++ deletedbranches
		if null resetbranches && null deletedbranches
			then successfulfinish stillmissing modifiedbranches
			else do
				unless (repoIsLocalBare g) $ do
					mcurr <- Branch.currentUnsafe g
					case mcurr of
						Nothing -> return ()
						Just curr -> when (any (== curr) modifiedbranches) $ do
							putStrLn $ unwords
								[ "You currently have"
								, show curr
								, "checked out. You may have staged changes in the index that can be committed to recover the lost state of this branch!"
								]
				putStrLn "Successfully recovered repository!"
				putStrLn "Please carefully check that the changes mentioned above are ok.."
				return (True, stillmissing, modifiedbranches)
	
	corruptedindex = do
		nukeIndex g
		putStrLn "Removed the corrupted index file. You should look at what files are present in your working tree and git add them back to the index when appropriate."
		return (True, S.empty, [])

	successfulfinish stillmissing modifiedbranches = do
		mapM_ putStrLn
			[ "Successfully recovered repository!"
			, "You should run \"git fsck\" to make sure, but it looks like"
			, "everything was recovered ok."
			]
		return (True, stillmissing, modifiedbranches)
	unsuccessfulfinish stillmissing = do
		if repoIsLocalBare g
			then do
				putStrLn "If you have a clone of this bare repository, you should add it as a remote of this repository, and retry."
				putStrLn "If there are no clones of this repository, you can instead retry with the --force parameter to force recovery to a possibly usable state."
				return (False, stillmissing, [])
			else needforce stillmissing
	needforce stillmissing = do
		putStrLn "To force a recovery to a usable state, retry with the --force parameter."
		return (False, stillmissing, [])