Closes#884, final period missing when a citation is first added in note styles
Closes#1298, issues with footnotes and citations in OOo
Closes#1069, Use async HTTP calls for integration requests
Closes#1027, User-customizable integration port number
Closes#698, Migration away from VBA
Closes#1085, Migrate VBA plug-in to new XML-based API
Closes#792, Auto-updating of OO plugins
- dropping Zotero items into a bucket puts them in that IA bucket
- double clicking a bucket takes you to that IA bucket
In order to enable Zotero Commons:
1) Get an access key and secret key at http://www.archive.org/account/s3.php
2) Go to about:config
3) Search "commons" (no quotes)
4) Set "extensions.zotero.commons.enabled" to true
5) Enter your S3 access key into "extensions.zotero.commons.accessKey"
6) Enter your S3 secret key into "extensions.zotero.commons.secretKey"
7) Enter your buckets into "extensions.zotero.commons.buckets" as a comma separated list
Note: Steps 4-7 take effect in new windows
Known issue: Window title isn't set correctly
Says Ben:
===========================================
Some uses for this feature include:
- people who don't want to use Firefox as their main browser could set their Firefox homepage to zotero://fullscreen, making Zotero act as a standalone application
- people who do use Firefox could add the link to their Bookmarks Toolbar, and simply Shift-click it to have a Zotero "standalone application"
===========================================
- Add Zotero.Error(message, error) constructor to create a throwable error object with an error code
- Allow only one automatic client reset between manual syncs
- Fix "Source item for keyed source doesn't exist in Zotero.Item.getSource()" error
- Object produced by item.serialize() now contains .sourceItemKey instead of .sourceItemID
- Better error logging for missing XPCOM files
- Support for group libraries
- General support for multiple libraries of different types
- Streamlined sync support
- Using solely libraryID and key rather than itemID, and removed all itemID-changing code
- Combined two requests for increased performance and decreased server load
- Added warning on user account change
- Provide explicit error message on SSL failure
- Removed snapshot and link toolbar buttons and changed browser context menu options and drags to create parent items + snapshots
- Closes#786, Add numPages field
- Fixes#1063, Duplicate item with tags broken in Sync Preview
- Added better purging of deleted tags
- Added local user key before first sync
- Add clientDateModified to all objects for more flexibility in syncing
- Added new triples-based Relation object type, currently used to store links between items copied between local and group libraries
- Updated zotero.org translator for groups
- Additional trigger-based consistency checks
- Fixed broken URL drag in Firefox 3.5
- Disabled zeroconf menu option (no longer functional)
Developer-specific changes:
- Overhauled data layer
- Data object constructors no longer take arguments (return to 1.0-like API)
- Existing objects can be retrieved by setting id or library/key properties
- id/library/key must be set for new objects before other fields
- New methods:
- ZoteroPane.getSelectedLibraryID()
- ZoteroPane.getSelectedGroup(asID)
- ZoteroPane.addItemFromDocument(doc, itemType, saveSnapshot)
- ZoteroPane.addItemFromURL(url, itemType)
- ZoteroPane.canEdit()
- Zotero.CollectionTreeView.selectLibrary(libraryID)
- New Zotero.URI methods
- Changed methods
- Many data object methods now take a libraryID
- ZoteroPane.addAttachmentFromPage(link, itemID)
- Removed saveItem and saveAttachments parameters from Zotero.Translate constructor
- translate() now takes a libraryID, null for local library, or false to not save items (previously on constructor)
- saveAttachments is now a translate() parameter
- Zotero.flattenArguments() better handles passed objects
- Zotero.File.getFileHash() (not currently used)
- allow deletion of multiple styles simultaneously
- split Zotero.Styles/Zotero.Style and Zotero.CSL into style.js and csl.js respectively
- add Zotero.File.getBinaryContents for binary-safe file reading
- add Zotero.MIMETypeHandler to provide a unified interface for registering observers and capturing MIME types with Zotero
- Still experimental and incomplete, with no lock support and not much error handling
Also:
- New expiry date for sync functions
- Attachment character set was being dropped during syncing
- Possibly improves sizing issues with preferences window
- Fixes problems with attachment filenames with extended characters
- Fixes some problem with tags that I don't remember
- Makes XMLHTTPRequest calls are now background requests (no auth windows or other prompts)
- Z.U.HTTP.doOptions() now takes an nsIURI instead of a URL spec
- New methods:
- Zotero.Utilities.rand(min, max)
- Zotero.Utilities.probability(x)
- Zotero.Utilities.Base64.encode(str) and decode(str)
- Zotero.getTempDirectory()
- Zotero.Date.dateToISO(date) - convert JS Date object to ISO 8601 UTC date/time
- Zotero.Date.isoToDate(isoDate) - convert an ISO 8601 UTC date/time to a JS Date object
closes#831, transparent EZProxy support
adds a proxy pane to the preferences
asks before saving proxies to the DB (to avoid the potential phishing risk #831 would otherwise pose)
closes#704, EndNote to Zotero style converter (won't actually convert styles due to copyright concerns, but will load them into the DB)
also adds CSL style manager
Also fixed to not display tags twice if both manual and automatic and to not display automatic tags if manual versions of the same tags are already linked to the current item
- Inspired by Dan Chudnov's Python/MODS-based Zeroconf demo at THATcamp
- Enabled by extensions.zotero.zeroconf.enabled (off by default)
- Currently supports only OS X (tested on Leopard, not sure about earlier versions)
- Uses Apple's dns-sd and mDNS command-client clients, but should be able to be extended to other clients, though a native library would be far superior
- Discovery is on-demand for now via Actions menu ("Search for Shared Libraries")
- Includes rudimentary web server (code copied from integration.js) that serves items as sync XML -- no authentication yet!
- Only supports top-level items
- Remote libraries show up in left pane (under remote computer name, for now)
- Items can be dragged into collections (but not the library yet, for some reason)
- On first run, might cause a long pause and the "This file was downloaded from the Internet" message on Leopard -- can't manage to get around the quarantine for the script file that we need to access stdout from Firefox
- Needs a lot of work, and without a real JS (or otherwise Mozilla-native) Zeroconf library we can't do proper discovery without intermittent polling
- But it works, at least for me
Also includes some data/sync-layer changes that I needed along the way (and that we'll need for shared collections of any type)
Apologies for the massive (and, due to data_access.js splitting, difficult-to-follow) commit. Please note that external code that accesses the data layer may need to be tweaked for compatibility. Here's a comprehensive-as-possible changelog:
- Added server sync functionality (incomplete)
- Overhaul of data layer
- Split data_access.js into separate files (item.js, items.js, creator.js, etc.)
- Made creators and collections first-class objects, similar to items
- Constructors now take id as first parameter, e.g. new Zotero.Item(1234, 'book'), to allow explicit id setting and id changing
- Made various data layer operations (including attachment fields) require a save() rather than making direct DB changes
- Better handling of unsaved objects
- Item.setCreator() now takes creator objects instead of creator ids, and Item.save() will auto-save unsaved creators
- clone() now works on unsaved objects
- Newly created object instances are now disabled after save() to force refetch of globally accessible instance using Zotero.(Items|Creators|etc.).get()
- Added secondary lookup key to data objects
- Deprecated getID() and getItemType() methods in favor of .id and .itemTypeID properties
- toArray() deprecated in favor of serialize(), which has a somewhat modified format
- Added support for multiple creators with identical data -- currently unimplemented in interface and most of data layer
- Added Item.diff() for comparing item metadata
- Database changes
- Added SQLite triggers to enforce foreign key constraints
- Added Zotero.DB.transactionVacuum flag to run a VACUUM after a transaction
- Added Zotero.DB.transactionDate, .transactionDateTime, and transactionTimestamp to retrieve consistent timestamps for entire transaction
- Properly store 64-bit integers
- Set PRAGMA locking_mode=EXCLUSIVE on database
- Set SQLite page size to 4096 on new databases
- Set SQLite page cache to 8MB
- Do some database cleanup and integrity checking on migration from 1.0 branch
- Removed IF NOT EXISTS from userdata.sql CREATE statements -- userdata.sql is now processed only on DB initialization
- Removed itemNoteTitles table and moved titles into itemNotes
- Abstracted metadata edit box and note box into flexible XBL bindings with various modes, including read-only states
- Massive speed-up of item tree view
- Several fixes from 1.0 branch for Fx3 compatibility
- Added Notifier observer to log delete events for syncing
- Zotero.Utilities changes
- New methods getSQLDataType() and md5()
- Removed onError from Zotero.Utilities.HTTP.doGet()
- Don't display more than 1024 characters in doPost() debug output
- Don't display passwords in doPost() debug output
- Added Zotero.Notifier.untrigger() -- currently unused
- Added Zotero.reloadDataObjects() to reset all in-memory objects
- Added |chars| parameter to Zotero.randomString(len, chars)
- Added Zotero.Date.getUnixTimestamp() and Date.toUnixTimestamp(JSDate)
- Adjusted zotero-service.js to simplify file inclusion
Various things (such as tags) are temporarily broken.
Including in the DB, which it turns out isn't really all that bad (thanks, among other things, to SQLite's ability to DROP tables within transactions without autocommitting (which MySQL can't do))
In other words, show both "Shakespeare" and "Shakespeare, William" in the drop-down, and if the latter is chosen, save both fields
One issue is that since the autocomplete is by default limited to the width of the textbox, longer entries get truncated (though you can see them with a mouseover), and that may not be easy to fix.
Changed "Scholar" to "Zotero", everywhere
Apologies to anyone with working copy changes, but there are probably the fewer at this moment than there will be again.
Hopefully this won't break anything, though existing prefs will be lost. I avoided scholar.google.com--if you know any other legitimate "scholar"s in the code, be sure to fix them once I'm done here.
This is a multi-commit change--there's at least one more coming. *Do not update to this version! It won't work!*
Differentiates between single and double fields for the search, but there's a problem in the current implementation in that only one field is editable at once, so displaying two-field names in a drop-down is a little problematic. While I could display the full names, comma-delimited, and get the discrete parts (which is what Scholar.Utilities.AutoComplete.getResultComment(), included in this commit, is for--the creatorID for the row would be hidden in the autocomplete drop-down comment field), it's a bit unclear what should happen when a user selects a comma-separated name from the drop-down of one of the fields. One option would be to have a row for the last name (in case that's all they want to complete) and other rows for "last, first" matches, and selecting one of the two-part names would replace whatever's in the opposite name field with the appropriate text (and save it to the DB, I'm afraid, unless I change how the creator fields work), keeping the focus in the current textbox for easy tabbing. Not great, but it might work.
Other ideas?
Example usage:
var windowWatcher = Components.classes["@mozilla.org/embedcomp/window-watcher;1"].
getService(Components.interfaces.nsIWindowWatcher);
var progress = new Scholar.ProgressWindow(windowWatcher.activeWindow);
progress.changeHeadline('Indexing item...');
progress.addLines(['All About Foo'], ['chrome://scholar/skin/treeitem-book.png']);
progress.addDescription('Bar bar bar bar bar');
progress.show();
progress.fade();
There are currently two types of fulltext searching: an SQL-based word index and a file scanner. They each have their advantages and drawbacks.
The word index is very fast to search and is currently used for the find-as-you-type quicksearch. However, indexing files takes some time, so we should probably offer a preference to turn it off ("Index attachment content for quicksearch" or something). There's also an issue with Chinese characters (which are indexed by character rather than word, since there are no spaces to go by, so a search for a word with common characters could produce erroneous results). The quicksearch doesn't use a left-bound index (since that would probably upset German speakers searching for "musik" in "nachtmusik," though I don't know for sure how they think of words) but still seems pretty fast.
* Note: There will be a potentially long delay when you start Firefox with this revision as it builds a fulltext word index of your existing items. We obviously need a notification/option for this. *
The file scanner, used in the Attachment Content condition of the search dialog, offers phrase searching as well as regex support (both case-sensitive and not, and defaulting to multiline). It doesn't require an index, though it should probably be optimized to use the word index, if available, for narrowing the results when not in regex mode. (It does only scan files that pass all the other search conditions, which speeds it up considerably for multi-condition searches, and skips non-text files unless instructed otherwise, but it's still relatively slow.)
Both convert HTML to text before searching (with the exception of the binary file scanning mode).
There are some issues with which files get indexed and which don't that we can't do much about and that will probably confuse users immensely. Dan C. suggested some sort of indicator (say, a green dot) to show which files are indexed.
Also added (very ugly) charset detection (anybody want to figure out getCharsetFromString(str)?), a setTimeout() replacement in the XPCOM service, an arrayToHash() method, and a new header to timedtextarea.xml, since it's really not copyright CHNM (it's really just a few lines off from the toolkit timed-textbox binding--I tried to change it to extend timed-textbox and just ignore Return keypress events so that we didn't need to duplicate the Mozilla code, but timed-textbox's reliance on html:input instead of html:textarea made things rather difficult).
To do:
- Pref/buttons to disable/clear/rebuild fulltext index
- Hidden prefs to set maximum file size to index/scan
- Don't index words of fewer than 3 non-Asian characters
- MRU cache for saved searches
- Use word index if available to narrow search scope of fulltext scanner
- Cache attachment info methods
- Show content excerpt in search results (at least in advanced search window, when it exists)
- Notification window (a la scraping) to show when indexing
- Indicator of indexed status
- Context menu option to index
- Indicator that a file scanning search is in progress, if possible
- Find other ways to make it index the NYT front page in under 10 seconds
- Probably fix lots of bugs, which you will likely start telling me about...now.
Addresses #260, Add auto-complete to search window
- New XPCOM autocomplete component for Zotero data -- can be used by setting the autocompletesearch attribute of a textbox to 'zotero' and passing a search scope with the autocompletesearchparam attribute. Additional parameters can be passed by appending them to the autocompletesearchparam value with a '/', e.g. 'tag/2732' (to exclude tags that show up in item 2732)
- Tag entry now uses more or less the same interface as metadata -- no more popup window -- note that tab isn't working properly yet, and there's no way to quickly enter multiple tags (though it's now considerably quicker than it was before)
- Autocomplete for tags, excluding any tags already set for the current item
- Standalone note windows now register with the Notifier (since tags needed item modification notifications to work properly), which will help with #282, "Notes opened in separate windows need item notification"
- Tags are now retrieved in alphabetical order
- Scholar.Item.replaceTag(oldTagID, newTag), with a single notify
- Scholar.getAncestorByTagName(elem, tagName) -- walk up the DOM tree from an element until an element with the specified tag name is found (also checks with 'xul:' prefix, for use in XBL), or false if not found -- probably shouldn't be used too widely, since it's doing string comparisons, but better than specifying, say, nine '.parentNode' properties, and makes for more resilient code
A few notes:
- Autocomplete in Minefield seems to self-destruct after using it in the same field a few times, taking down saving of the field with it -- this may or may not be my fault, but it makes Zotero more or less unusable in 3.0 at the moment. Sorry. (I use 3.0 myself for development, so I'll work on it.)
- This would have been much, much easier if having an autocomplete textbox (which uses an XBL-generated popup for the suggestions) within a popup (as it is in the independent note edit panes) didn't introduce all sorts of crazy bugs that had to be defeated with annoying hackery -- one side effect of this is that at the moment you can't close the tags popup with the Escape key
- Independent note windows now need to pull in itemPane.js to function properly, which is a bit messy and not ideal, but less messy and more ideal than duplicating all the dual-state editor and tabindex logic would be
- Hitting tab in a tag field not only doesn't work but also breaks things until the next window refresh.
- There are undoubtedly other bugs.
- About panel now gets version number automatically
- Change version from 1.0a1 to 1.0b1
* Important: If you're on an SVN install, you need to rename the scholar@chnm.gmu.edu text file in your profile extension directory to zotero@chnm.gmu.edu *
XPI installs will (I think) update automatically, since I kept an entry in updates.rdf with the old GUID
not yet implemented:
- formatted in-text citations, rather than placeholders
- footnotes
- selection of citation style (for now, only APA is available)
- support for non-ASCII characters
- exclusion of notes from select items window
- Windows support (although it shouldn't be difficult)
- probably much more...
Attachments.importFromURL() now first does a HEAD request to get the MIME type and passes that through Scholar.MIME.hasInternalHandler() (now abstracted from Scholar.File, along with the other MIME functions) -- if it can handle the MIME type, it uses a hidden browser; otherwise, it use a remote web page persist to save the file directly
- Fixed bug in File.hasInternalHandler() (no access to navigator from XPCOM)
- Changed "View Attachment" action to check File.hasInternalHandler() and use window.loadURI() for internally handled files and nsIFile.launch() for external -- this prevents the user from getting a helper app dialog when they try to view external files. I basically had to duplicate most of Mozilla's content detection logic and "guess" whether or not it will be able to handle the file internally, which seems a little silly, but, while I feel there are probably better ways to do various parts of this, what's here seems to do the trick. Let me know if you notice it guessing incorrectly (i.e. you get a helper app dialog rather than having a file just open or it launches a file that should've just been loaded into the window). Also look for text files that should be launched rather than opened, especially XML-based data files, as this is a chance for Scholar to be smarter than Firefox itself--for example, OmniGraffle files, which are actually just XML files, normally open up in Firefox as an XML tree, but Scholar will launch them instead. (I imagine the same will need to be done for OmniOutliner, among other things...)
Implemented advanced/saved search architecture -- to use, you create a new search with var search = new Scholar.Search(), add conditions to it with addCondition(condition, operator, value), and run it with search(). The standard conditions with their respective operators can be retrieved with Scholar.SearchConditions.getStandardConditions(). Others are for special search flags and can be specified as follows (condition, operator, value):
'context', null, collectionIDToSearchWithin
'recursive', 'true'|'false' (as strings!--defaults to false if not specified, though, so should probably just be removed if not wanted), null
'joinMode', 'any'|'all', null
For standard conditions, currently only 'title' and the itemData fields are supported -- more coming soon.
Localized strings created for the standard search operators
API:
search.setName(name) -- must be called before save() on new searches
search.load(savedSearchID)
search.save() -- saves search to DB and returns a savedSearchID
search.addCondition(condition, operator, value)
search.updateCondition(searchConditionID, condition, operator, value)
search.removeCondition(searchConditionID)
search.getSearchCondition(searchConditionID) -- returns a specific search condition used in the search
search.getSearchConditions() -- returns search conditions used in the search
search.search() -- runs search and returns an array of item ids for results
search.getSQL() -- will be used by Dan for search-within-search
Scholar.Searches.getAll() -- returns an array of saved searches with 'id' and 'name', in alphabetical order
Scholar.Searches.erase(savedSearchID) -- deletes a given saved search from the DB
Scholar.SearchConditions.get(condition) -- get condition data (operators, etc.)
Scholar.SearchConditions.getStandardConditions() -- retrieve conditions for use in drop-down menu (as opposed to special search flags)
Scholar.SearchConditions.hasOperator() -- used by Dan for error-checking
add Scholar.Cite and Scholar.CSL for parsing items into a bibliography using CSL. unfortunately, the output is not very good at the moment, and the format likely needs some changes, but I'm working with a few other people on getting it to that point.
closes#100, migrate ingester to Scholar.Translate
closes#88, migrate scrapers away from RDF
closes#9, pull out LC subject heading tags
references #87, add fromArray() and toArray() methods to item objects
API changes:
all translation (import/export/web) now goes through Scholar.Translate
all Scholar-specific functions in scrapers start with "Scholar." rather than the jumbled up piggy bank un-namespaced confusion
scrapers now longer specify items through RDF (the beginning of an item.fromArray()-like function exists in Scholar.Translate.prototype._itemDone())
scrapers can be any combination of import, export, and web (type is the sum of 1/2/4 respectively)
scrapers now contain functions (doImport, doExport, doWeb) rather than loose code
scrapers can call functions in other scrapers or just call the function to translate itself
export accesses items item-by-item, rather than accepting a huge array of items
MARC functions are now in the MARC import translator, and accessed by the web translators
new features:
import now works
rudimentary RDF (unqualified dublin core only), RIS, and MARC import translators are implemented (although they are a little picky with respect to file extensions at the moment)
items appear as they are scraped
MARC import translator pulls out tags, although this seems to slow things down
no icon appears next to a the URL when Scholar hasn't detected metadata, since this seemed somewhat confusing
apologizes for the size of this diff. i figured if i was going to re-write the API, i might as well do it all at once and get everything working right.
