Commit graph

124 commits

Author SHA1 Message Date
Joey Hess
018b5b8173
Support building with socks-0.6 and persistant-template-2.7
persistent-template now needs UndecidableInstances.

socks changed defaultSocksConf to take a SockAddr.
2019-07-30 12:50:48 -04:00
Joey Hess
9a5ddda511
remove many old version ifdefs
Drop support for building with ghc older than 8.4.4, and with older
versions of serveral haskell libraries than will be included in Debian 10.

The only remaining version ifdefs in the entire code base are now a couple
for aws!

This commit should only be merged after the Debian 10 release.
And perhaps it will need to wait longer than that; it would make
backporting new versions of  git-annex to Debian 9 (stretch) which
has been actively happening as recently as this year.

This commit was sponsored by Ilya Shlyakhter.
2019-07-05 15:09:37 -04:00
Joey Hess
6babb2c73f
remove wrong uniqueness constraint from ContentIdentifier db
Fix bug that caused importing from a special remote to repeatedly download
unchanged files when multiple files in the remote have the same content.

Unfortunately, there's really no good way to remove a uniqueness constraint
from a sqlite database. The best that can be done is to make a new table
and copy the data over. But that would require using persistent's
migrations or raw sql, and I don't want to do either.

Instead, a sledgehammer approach: Renamed .git/annex/cid to
.git/annex/cids. When the new database doesn't exist, it will be populated
from the git-annex branch.

Noting deletes the old database. Don't want to delete it out from under
some long-running git-annex process that might be using it. It could
eventually be deleted. But this is such a new feature, probably few repos
have the database in any case.
2019-04-09 19:58:24 -04:00
Joey Hess
40ecf58d4b
update licenses from GPL to AGPL
This does not change the overall license of the git-annex program, which
was already AGPL due to a number of sources files being AGPL already.

Legally speaking, I'm adding a new license under which these files are
now available; I already released their current contents under the GPL
license. Now they're dual licensed GPL and AGPL. However, I intend
for all my future changes to these files to only be released under the
AGPL license, and I won't be tracking the dual licensing status, so I'm
simply changing the license statement to say it's AGPL.

(In some cases, others wrote parts of the code of a file and released it
under the GPL; but in all cases I have contributed a significant portion
of the code in each file and it's that code that is getting the AGPL
license; the GPL license of other contributors allows combining with
AGPL code.)
2019-03-13 15:48:14 -04:00
Joey Hess
e3a704224f
fix export db locking deadlock 2019-03-07 16:06:02 -04:00
Joey Hess
9a72785307
fixes to export db lookup when accessing importtree=yes
Now in a fresh clone with a importtree=yes remote enabled,
git annex fsck --from the remote works.
2019-03-07 14:10:56 -04:00
Joey Hess
50797ee2c5
remove obsolete comment 2019-03-07 13:02:46 -04:00
Joey Hess
71fec9060c
move 2019-03-07 12:56:40 -04:00
Joey Hess
ee251b2e2e
implement updating the ContentIdentifier db with info from the git-annex branch
untested

This won't be super slow, but it does need to diff two likely large
trees, and since the git-annex branch rarely sits still, it will most
likely be run at the beginning of every import.

A possible speed improvement would be to only run this when the database
did not contain a ContentIdentifier. But that would only speed up
imports when there is no new version of a file on the special remote,
at most renames of existing files being imported.

A better speed improvement would be to record something in the git-annex
branch that indicates when an import has been run, and only do the diff
if the git-annex branch has record of a newer import than we've seen
before. Then, it would only run when there is in fact new
ContentIdentifier information available from a remote. Certianly doable,
but didn't want to complicate things yet.
2019-03-06 18:04:30 -04:00
Joey Hess
f85f06aae3
change to more efficient IKey 2019-03-06 11:14:33 -04:00
Joey Hess
3c652e1499
limit to requested remote 2019-03-05 15:56:28 -04:00
Joey Hess
cd3a2b023a
initial try at using storeExportWithContentIdentifier
Untested, and I'm not sure about the locking of the ContentIdentifier db.
2019-03-04 17:50:41 -04:00
Joey Hess
b67fa2180e
add getExportedKey
Not optimised because that would need transition code to be written for
existing export datbases.
2019-03-04 17:27:10 -04:00
Joey Hess
138d07eb97
add getContentIdentifiers
Changed the database schema for this, with a new index.
2019-03-04 16:48:07 -04:00
Joey Hess
1c8793691a
import: update location log for removed files 2019-03-01 13:26:59 -04:00
Joey Hess
7acee61adf
rename 2019-03-01 12:50:33 -04:00
Joey Hess
d0066d9a87
fully update export db during import
This makes exporting immediately after import and merge be a no-op.
2019-02-27 15:29:41 -04:00
Joey Hess
775e6ed86f
fix table name 2019-02-27 13:52:56 -04:00
Joey Hess
fd304dce60
split out Types.Import and some changes to the types in it 2019-02-21 13:39:09 -04:00
Joey Hess
a818bc5e73
add Database.ContentIdentifier
Does not yet have a way to update with new information from the
git-annex branch, which will be needed when multiple repos are importing
from the same remote.
2019-02-20 16:59:10 -04:00
Joey Hess
9216718fa0
fix one more export conflict false positive
Somehow forgot about the case where the current export db tree is the
same one in the export log, and it warned about an export conflict when
getting a file in that situation. Of course it's no conflict at all!

This commit was sponsored by Jochen Bartl on Patreon.
2019-01-30 13:18:42 -04:00
Joey Hess
ad1d422dd7
fix false positive in export conflict detection
Like the earlier fixed one in Command.Export, it occurred when the same
tree was exported by multiple clones. Previous fix was incomplete since
several other places looked at the list of exported trees to detect when
there was an export conflict. Added a single unified function to avoid
missing any places it needed to be fixed.

This commit was sponsored by mo on Patreon.
2019-01-30 12:36:30 -04:00
Joey Hess
d3ab5e626b
rename key2file and file2key
What these generate is not really suitable to be used as a filename,
which is why keyFile and fileKey further escape it. These are just
serializing Keys.

Also removed a quickcheck test that was very unlikely to test anything
useful, since it relied on random chance creating something that looks
like a serialized key. The other test is sufficient for testing what
that was intended to test anyway.
2019-01-14 13:03:35 -04:00
Joey Hess
f62114e5ad
Merge branch 'remove-esqueleto' 2018-11-20 11:50:04 -04:00
Joey Hess
d65df7ab21
improve messages around export conflicts
When an export conflict prevents accessing a special remote, be clearer
about what the problem is and how to resolve it.

This commit was sponsored by Trenton Cronholm on Patreon.
2018-11-13 15:50:06 -04:00
Joey Hess
635b0b1df6
Merge remote-tracking branch 'seanparsons/remove-esqueleto' into remove-esqueleto 2018-11-10 12:03:52 -04:00
Joey Hess
0db653f12c
remove unused BangPatterns 2018-11-09 13:09:26 -04:00
Joey Hess
f78f97780c
Fix build with persistent-sqlite older than 2.6.3.
This commit was sponsored by Jack Hill on Patreon.
2018-11-09 13:09:02 -04:00
Sean Parsons
ef5a735d47 Fixed a not equal condition in addAssociatedFile. 2018-11-06 22:50:00 +00:00
Sean Parsons
42bdc9fa2f Removed Esqueleto as a dependency. 2018-11-06 22:18:55 +00:00
Joey Hess
6d8b8a3275
remove unused import 2018-10-31 12:58:53 -04:00
Joey Hess
fcc9eea554
avoid closeDb opening the db if it's not already open 2018-10-30 22:19:05 -04:00
Joey Hess
1428568554
retry when sqlite throws ErrorIO
I suspect this may be due to SQLITE_IOERR_SHORT_READ, but have not
verified.

I was able to reproduce it on Linux after running the test suite in a loop
for 1-3 hours until it failed.

The WAL mode entry change in 3963c5fcf5
may have hidden the problem I was seeing; I have not seen an ErrorIO
since then.
2018-10-30 18:06:38 -04:00
Joey Hess
3963c5fcf5
better approach to enabling WAL mode
The old approach opened the database an extra time to enable WAL mode,
but more recent persistent-sqlite has a better API to enable it.
2018-10-30 13:47:38 -04:00
Joey Hess
a89db2c604
link to bug report blob
delete from tree
2018-10-30 12:07:38 -04:00
Joey Hess
57107cf213
sqlite bug report that the developers never responded to
Adding to git-annex's history so it doesn't get lost; the gmane archive
of it is long gone.
2018-10-30 12:04:28 -04:00
Joey Hess
718915e9fc
improve comments 2018-10-30 11:52:05 -04:00
Joey Hess
def5d8b02c
Fix potential crash in exporttree database due to failure to honor uniqueness constraint
I don't know the circumstances, but have a report of this:

git-annex: failed to commit changes to sqlite database: Just SQLite3 returned
ErrorConstraint while attempting to perform step.

All 3 tables in the export db have uniqueness constraints on them,
insertUnique is used for all the rest, but this use of insertMany
means it doesn't check the constraint. I guess that's what caused the
crash, but I have not been able to test it yet.

Use putMany when available, as it should be faster than mapM of insertMany.

This commit was sponsored by Brock Spratlen on Patreon.
2018-10-09 16:56:33 -04:00
Joey Hess
b8ed97f5d8
add missing space 2018-10-09 16:32:59 -04:00
Joey Hess
a7f0b99a33
fix v6 deadlock with git 2.1.4
I don't know why git diff --raw would run the clean filter, but it did
with this version of git. Perhaps it is cleaning the file to generate the
diff to search with -G?  But then why would newer gits not run the clean
filter?

It caused git annex to deadlock because the keys database was locked
and ran a git command that ran git-annex, which tried to read from the
keys database.

This commit was sponsored by Brett Eisenberg on Patreon.
2018-09-13 13:55:25 -04:00
Joey Hess
50fa17aee6
v6: recover from race between git mv and git-annex get/drop
Update pointer file next time reconcileStaged is run to recover from the
race.

Note that restagePointerFile causes git to run the clean filter,
and that will run reconcileStaged. So, normally by the time the git
annex get/drop command finishes, the race has already been dealt with.
It may be that, in some case, that won't happen and the race will be
dealt with at a later point. git-annex could run reconcileStaged at
shutdown if that becomes a problem.

This does not handle the situation where the git mv is committed before
git-annex gets a chance to run again. git commit does run the clean
filter, and that happens to re-inject the content if it was supposed to
be dropped but is still populated. But, the case where the file was
supposed to be gotten but is not populated is not handled yet.

This commit was supported by the NSF-funded DataLad project.
2018-08-22 15:56:43 -04:00
Joey Hess
18ecf41917
avoid running reconcileStaged when the index has not changed
This commit was supported by the NSF-funded DataLad project.
2018-08-22 13:04:12 -04:00
Joey Hess
5e56d9b620
v6: Update associated files database when git has staged changes to pointer files
This commit was supported by the NSF-funded DataLad project.
2018-08-21 17:02:20 -04:00
Joey Hess
710d6a35ed
fix build with old version of persistent 2017-09-25 09:57:41 -04:00
Joey Hess
129418615b
refactor 2017-09-20 16:22:32 -04:00
Joey Hess
5f9eff3f32
fix bug that prevented db being written to disk in SingleWriter mode
The bug occurred when closeDb was not called, and garbage collection of
the DbHandle didn't give the workerThread time to shut down. Fixed by
exiting the runSqlite action when a commit is made.

(MultiWriter mode already forked off a runSqlite action, so avoided the
problem.)

This commit was sponsored by Brock Spratlen on Patreon.
2017-09-18 19:42:20 -04:00
Joey Hess
f4be3c3f89
merge changes made on other repos into ExportTree
Now when one repository has exported a tree, another repository can get
files from the export, after syncing.

There's a bug: While the database update works, somehow the database on
disk does not get updated, and so the database update is run the next
time, etc. Wasn't able to figure out why yet.

This commit was sponsored by Ole-Morten Duesund on Patreon.
2017-09-18 19:21:41 -04:00
Joey Hess
0ad7e36dc1
update ExportTree table efficiently
Use same diff and key lookup except when the whole tree has to be
scanned.

This commit was sponsored by Peter Hogg on Patreon.
2017-09-18 14:27:50 -04:00
Joey Hess
b03d77c211
add ExportTree table to export db
New table needed to look up what filenames are used in the currently
exported tree, for reasons explained in export.mdwn.

Also, added smart constructors for ExportLocation and ExportDirectory to
make sure they contain filepaths with the right direction slashes.

And some code refactoring.

This commit was sponsored by Francois Marier on Patreon.
2017-09-18 13:59:59 -04:00
Joey Hess
e1f5c90c92
split out Types.Export 2017-09-15 16:46:03 -04:00