git is slow when the index file is large and has to be rewritten each time
a file is changed. To speed this up, added a journal where changes are
recorded before being fed into the index file and committed to the
git-annex branch. The entire journal can be fed into git with just 2
commands, and only one write of the index file.
to avoid some issues with git on OSX with the mixed-case directories. No
migration is needed; the old mixed case hash directories are still read;
new information is written to the new directories.
This means there can be 1024 subdirs, each with up to 1024 sub-subdirs.
So with hundreds of millions of annexed objects, each leaf directory will
have only a few files on average.
It compiles. It sorta works. Several subcommands are FIXME marked and
broken, because things that used to accept separate --backend and --key
params need to be changed to accept just a --key that encodes all the key
info, now that there is metadata in keys.
This relies on git-annex's behavior of reading the config of local repos.
That allows repoIsLocalBare to examine the git config for core.bare.
Hopefully, gitAnnexLocation, gitAnnexDir, and gitAnnexObjectDir
are only used on local repos. But, I have not audited fully, since
they're probably not (see for example copyToRemote). And so,
the functions fall back to their old non-bare-aware behavior for
non-local repos.
* Improved temp file handling. Transfers of content can now be resumed
from temp files later; the resume does not have to be the immediate
next git-annex run.
* unused: Include partially transferred content in the list.
Rename Locations functions for better consitency, and make their values
more consistent too.
Used </> rather than manually building paths. There are still more places
that manually do so, but are tricky, due to the behavior of </> when
the second FilePath is absolute. So I only changed places where
it obviously was relative.
* fsck: Check if annex.numcopies is satisfied.
* fsck: Verify the sha1 of files when the SHA1 backend is used.
* fsck: Verify the size of files when the WORM backend is used.
* fsck: Allow specifying individual files to fsk if fscking everything
is not desired.
* fsck: Fix bug, introduced in 0.04, in detection of unused data.
