mirrors/git-annex
2
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions
36479 commits 13 branches 442 tags 103 MiB
Commit graph

9394 commits

Author SHA1 Message Date
yarikoptic
dda81ca26f Added a comment 2019-11-29 18:09:45 +00:00
yarikoptic
dd33f68982 refiled under dandi project - use case is https://gin.g-node.org 2019-11-29 18:06:14 +00:00
ply
8a3c543b3b Added a comment 2019-11-28 11:18:50 +00:00
ply
822962fa5f 2019-11-28 11:10:51 +00:00
yarikoptic
01ee4995c5 Added a comment: related: shouldn't git annex try external remotes to download config? 2019-11-28 01:22:53 +00:00
yarikoptic
7752e73481 initial report on inability to use remotes with authentication cached by git 2019-11-28 01:01:49 +00:00
Joey Hess
d4661959de
Merge branch 'master' into sqlite 2019-11-21 17:26:50 -04:00
xwvvvvwx
f39e5a4219 Added a comment 2019-11-21 17:32:31 +00:00
Joey Hess
24c69a3c1f
comment 2019-11-19 13:14:56 -04:00
Joey Hess
b321526473
OSX link libs into git-core directory 
So that binaries in that directory can find the library next to them,
where they get modified to look.

This is a hack; it would be better for OSXMkLibs to build a list of what
libraries are needed where.

Unsure if this is needed due to a recent reversion, or is an older
problem, so updated changelog accordingly.
 2019-11-14 18:31:58 -04:00
Joey Hess
842449b086
linuxstandalone: Fix a regression that broke git-remote-https. 2019-11-14 15:08:23 -04:00
Joey Hess
dfd9f4e5a1
Merge branch 'master' of ssh://git-annex.branchable.com 2019-11-14 14:04:20 -04:00
Joey Hess
667d38a8f1
Fix a crash (STM deadlock) when -J is used with multiple files that point to the same key 
See the comment for a trace of the deadlock.

Added a new StartStage. New worker threads begin in the StartStage.
Once a thread is ready to do work, it moves away from the StartStage,
and no thread will ever transition back to it.

A thread that blocks waiting on another thread that is processing
the same key will block while in the StartStage. That other thread
will never switch back to the StartStage, and so the deadlock is avoided.
 2019-11-14 13:51:09 -04:00
yarikoptic
45ad67c6f0 forgotten /details 2019-11-14 03:28:27 +00:00
yarikoptic
25af2da994 initial report of standalone build regression 2019-11-14 03:27:37 +00:00
Ilya_Shlyakhter
5330e3772f Added a comment: catch-all deadlock breaker 2019-11-13 22:33:59 +00:00
Joey Hess
6e59c652d2
clues 2019-11-13 18:07:44 -04:00
Joey Hess
98954aaf2c
followup 2019-11-13 15:56:59 -04:00
Joey Hess
0096db7b42
much flailing 2019-11-13 15:23:10 -04:00
yarikoptic
31444109a7 initial bug report on parallel get of the same key 2019-11-12 21:47:39 +00:00
Joey Hess
48748acc87
Merge branch 'master' of ssh://git-annex.branchable.com 2019-11-12 14:14:54 -04:00
nhatkhai
b68d19238e 2019-11-12 18:05:56 +00:00
Joey Hess
890330f0fe
make --json-error-messages capture url download errors 
Convert Utility.Url to return Either String so the error message can be
displated in the annex monad and so captured.

(When curl is used, its errors are still not caught.)
 2019-11-12 13:52:38 -04:00
Joey Hess
6147130e86
Merge branch 'master' into sqlite 2019-11-05 12:59:28 -04:00
Joey Hess
41825195ba
Merge branch 'master' of ssh://git-annex.branchable.com 2019-11-05 12:51:50 -04:00
Joey Hess
3cb2427dbc
fix typo 2019-11-04 14:30:27 -04:00
yarikoptic
ced983d4bf Added a comment: the issue persists 2019-11-01 18:12:27 +00:00
jonjitsu
047e6ce4a3 2019-11-01 11:55:22 +00:00
jonjitsu
32ff08f322 2019-11-01 11:54:28 +00:00
yarikoptic
b6c3b60a5b added meta tags 2019-10-31 12:55:54 +00:00
yarikoptic
e756f8d2a8 initial report on an error message from addurl 2019-10-31 12:55:03 +00:00
Joey Hess
09c7cbbaa8
update for things already fixed in this branch 2019-10-30 13:57:22 -04:00
Joey Hess
f318743f77
rename this so it does not start with a dash 2019-10-23 12:16:12 -04:00
Joey Hess
bbdeb1a1a8
sync: Fix crash when there are submodules and an adjusted branch is checked out 
Reverse adjusting the branch uses treeItemToTreeContent, which was missed
when adding submodule support earlier.
 2019-10-23 11:52:56 -04:00
Joey Hess
70b306ec34
start at analysis before dental appt 2019-10-22 15:46:34 -04:00
Joey Hess
13d86a9c88
reproduced 2019-10-22 15:33:00 -04:00
Joey Hess
df963469f2
comment 2019-10-22 13:12:57 -04:00
Joey Hess
abb5b675f1
comment 2019-10-22 13:10:28 -04:00
Ilya_Shlyakhter
9a46f17e2c Added a comment: skipping dotfiles 2019-10-21 20:39:09 +00:00
Ilya_Shlyakhter
b8fb0d5cb9 Added a comment: different annex.largefiles setting for git add than for git-annex add 2019-10-21 20:29:07 +00:00
Joey Hess
913ac80d33
close a bug report redundant with an existing todo 
copied over the dandi tag

updated the todo, as now that sameas is done it's unblocked
 2019-10-21 15:23:04 -04:00
Joey Hess
b94f2c18e1
response 2019-10-21 13:13:21 -04:00
Ilya_Shlyakhter
7c788c1f95 added bug report about unexpectedly ignoring dotfiles 2019-10-21 02:43:48 +00:00
Ilya_Shlyakhter
41b1607aec bug report of testremote failure with AWS S3 2019-10-19 21:22:27 +00:00
jason.dixon.email@aa0e536a2ec2877d6f666108dbbc6e39bbe87ac0
7b13db551d Added a comment: Does git annex add do something different to smudge filter add? 2019-10-19 00:51:14 +00:00
Joey Hess
904b175707
Fix build with persistent-2.10. 
Added an additional constraint that persistent needs.
This also builds with persistent-2.9.2 without needing any cpp.
 2019-10-17 11:58:31 -04:00
Joey Hess
76bb9ca43a
close as fixed in daily build 
The too old version will natrually be fixed by the release.
 2019-10-17 11:02:43 -04:00
nrg@bd619d1ebf16e6324c546adea8be8fe1cc2b4325
10c9ba3430 Added a comment: Issue is with persistent > 2.9.2 2019-10-17 13:30:28 +00:00
Joey Hess
bf7a22b812
analysis 2019-10-16 10:30:40 -04:00
leej
73f2750aac Added a comment: version error also reproduces on 7.20190912 from kitenet.net (downloaded 8/20/2019) 2019-10-15 23:31:40 +00:00
leej
e9fb1aa203 2019-10-15 22:38:47 +00:00
jason.dixon.email@aa0e536a2ec2877d6f666108dbbc6e39bbe87ac0
3ac7fa3524 Added a comment: One other thing to add 2019-10-15 10:44:14 +00:00
jason.dixon.email@aa0e536a2ec2877d6f666108dbbc6e39bbe87ac0
17f54fc008 2019-10-15 10:37:39 +00:00
nrg@bd619d1ebf16e6324c546adea8be8fe1cc2b4325
a3fdc23828 2019-10-14 19:14:02 +00:00
yarikoptic
25e78d5f22 initial complaint that cannot use --duplicate and --reinject-duplicates 2019-10-14 14:56:19 +00:00
https://tribut.de/
5f36424eaa Added a comment 2019-10-14 09:33:34 +00:00
yarikoptic
79325b3e66 initial report about missing url= for git-lfs remote 2019-10-09 17:44:14 +00:00
Joey Hess
f4dd7d5191
work around windows having infected git's plumbing 
Work around git cat-file --batch's odd stripping of carriage return from
the end of the line (some windows infection), avoiding crashing when the
repo contains a filename ending in a carriage return.
 2019-10-08 15:27:05 -04:00
Joey Hess
8966ba2cff
git-annex-standalone.rpm: Fix the git-annex-shell symlink 2019-10-08 14:43:28 -04:00
Joey Hess
53da7f1cf8
update uninit to handle all the v7 stuff 
* uninit: Remove several git hooks that git-annex init sets up.
* uninit: Remove the smudge and clean filters that git-annex init sets up.
 2019-10-08 14:34:00 -04:00
Joey Hess
1113caa53e
preserve unlocked file mtime when dropping 
When dropping an unlocked file, preserve its mtime, which avoids git status
unncessarily running the clean filter on the file.

If the index file has close to the same mtime as a work tree file, git will
not trust the index to be up-to-date, and re-runs the clean filter
unncessarily. Preserving the mtime when depopulating a pointer file avoids
git status doing a little (or maybe a lot) of unncessary work.

There are other places that the mtime could be preserved, including other
places where pointer files are written perhaps, but also
populatePointerFile. But, I don't know of cases where those lead to git
status doing unncessary work, so I just fixed the one I'm aware of for now.
 2019-10-08 14:01:12 -04:00
Ilya_Shlyakhter
22a6fcaa24 added report of repeated git index refresh 2019-10-07 18:57:20 +00:00
Dwk
adcc7b3560 2019-10-05 01:36:53 +00:00
svw
98ba417ee6 2019-10-04 06:09:25 +00:00
emerson.f.harkin@41a492cd1104c2c1461a2bed652a04e3842771b3
bf0070d43c rename bugs/Incorrectly_linked_git_annex_shell_in_standalone_tarball.mdwn to bugs/Incorrectly_linked_git_annex_shell_in_standalone_rpm.mdwn 2019-10-03 20:29:38 +00:00
emerson.f.harkin@41a492cd1104c2c1461a2bed652a04e3842771b3
9eb899adeb 2019-10-03 20:27:56 +00:00
branchable@bafd175a4b99afd6ed72501042e364ebd3e0c45e
18f25f34a7 Added a comment 2019-09-30 22:25:11 +00:00
Joey Hess
3066bdb1fb
fix annex.largefiles largerthan/smallerthan bug 
Fix bug in handling of annex.largefiles that use largerthan/smallerthan.
When adding a modified file, it incorrectly used the file size of the old
version of the file, not the current size.

That was the only largefiles limit that didn't directly look at the file on
disk already. Added a new type to keep straight the two different ways such
a limit can be matched. I kind of wanted to extend MatchingFile or FileInfo
to indicate that the matcher is supposed to operate on files from disk or
annex, but it turned out to be too complex to implement it that way.

This also changes the LimitAnnexFiles case when lookupFileKey does not find
a key. It used to fall back to statting the file, now it always returns
False. I doubt the old code could really get to that point, but if it
somehow does, it's better for preferred content matching to be consistent.
 2019-09-30 17:15:08 -04:00
Joey Hess
3b8c94fcbd
fix an old bug, open new bug I noticed while confirming the old bug was fixed 2019-09-30 16:30:29 -04:00
Joey Hess
9df7718e15
close 2019-09-30 15:40:15 -04:00
Joey Hess
f2737a5fbe
enable-tor: Run kdesu with -c option. 2019-09-30 15:14:05 -04:00
Joey Hess
2b55a2b882
remotedaemon: Don't list --stop in help since it's not supported. 
Also, move out of plumbing section. When using tor, the remotedaemon is
part of the user's workflow, as it runs the tor hidden service.
 2019-09-30 14:40:46 -04:00
Joey Hess
a9f078da43
Merge branch 'master' of ssh://git-annex.branchable.com 2019-09-30 14:21:23 -04:00
Joey Hess
430e33e3dd
comment 2019-09-30 13:53:50 -04:00
Joey Hess
9a22adf358
comment 2019-09-30 13:40:53 -04:00
branchable@bafd175a4b99afd6ed72501042e364ebd3e0c45e
8587102c2c add commit SHAs and remove irrelevant logs 2019-09-29 23:49:00 +00:00
branchable@bafd175a4b99afd6ed72501042e364ebd3e0c45e
1c1a724f52 2019-09-29 23:35:29 +00:00
branchable@bafd175a4b99afd6ed72501042e364ebd3e0c45e
774b0ce342 2019-09-29 22:24:47 +00:00
branchable@bafd175a4b99afd6ed72501042e364ebd3e0c45e
142f99c64c 2019-09-29 21:01:01 +00:00
Joey Hess
2853df5da2
response 2019-09-27 12:59:10 -04:00
Joey Hess
6a218f7a96
comment 2019-09-27 12:55:16 -04:00
Joey Hess
add8632910
Merge branch 'master' of ssh://git-annex.branchable.com 2019-09-27 12:47:30 -04:00
Joey Hess
946ea4b961
bug 2019-09-27 11:51:52 -04:00
yarikoptic
22aa7b290d question about post-receive 2019-09-27 01:48:36 +00:00
oliv5
9220899c8a Added a comment 2019-09-26 20:39:41 +00:00
Joey Hess
06e57449a9
comment 2019-09-26 13:04:50 -04:00
Joey Hess
db1fb97699
comment 2019-09-26 12:40:08 -04:00
Joey Hess
8fa4e4ef81
Merge branch 'master' of ssh://git-annex.branchable.com 2019-09-26 12:28:58 -04:00
Joey Hess
ce8f4cb57b
comment 2019-09-26 12:26:34 -04:00
oliv5
2505722d33 Added a comment 2019-09-25 07:41:51 +00:00
Joey Hess
779caed3bc
response 2019-09-24 17:02:38 -04:00
Ilya_Shlyakhter
c0dfd3eaa3 Added a comment: about --json-error-messages 2019-09-24 19:19:20 +00:00
Joey Hess
b7c78c2869
close 2019-09-24 11:08:42 -04:00
Yaroslav Halchenko
6eb8784e7c
Embed projects/{datalad,repronim} tags for the past todo/bugs 
Assignment between datalad and repronim might not be 100% right but
approx there depending on the date

Here is the command and its output:

	$> git grep -l '\[\[!meta author=\(yoh\|ben\|yarikoptic\|kyle\)\]\]' | grep -v comment | grep -v assure_correct_names___40 | while read f; do d=$(git log --date=iso $f| awk '/^Date/{print $2;}' | tail -n 1 ); p=datalad; if [[ "$d" =~ 2019-.* ]] || [[ "$d" =~ 2018-1.* ]]; then p=repronim; fi; echo $d $p: $f; sed -i -e "s,\(\[\[\!meta author.*\),\1\n\[\[\!tag projects/$p\]\],g" $f; done
	2017-10-10 datalad: doc/bugs/--shared_setting_of_git_causes_annex__39__ed_files_to_be_writeable__33__.mdwn
	2017-08-12 datalad: doc/bugs/2_ssh_connection_prompts_for_password.mdwn
	2018-10-22 repronim: doc/bugs/3_tests_fail_while_trying_to_build_fresh_git_annex_6.20181011+git109-gff9ba1f4d.mdwn
	2018-12-20 repronim: doc/bugs/7.20181211+git29-gab4a1bed9_fails_tests_during_neurodebian_build.mdwn
	2016-03-12 datalad: doc/bugs/OSX__58___addurl_--batch_--json_spits_out_shortened_output_string__dies_off_with_4.mdwn
	2018-11-16 repronim: doc/bugs/Please_include_version_of_used_to_build_ghc_within___34__git_annex_version__34__.mdwn
	2016-03-10 datalad: doc/bugs/R__47__O_permissions_are_stalking_me_somehow.mdwn
	2019-07-03 repronim: doc/bugs/Regression_in___96__find_--json__96___output.mdwn
	2017-01-27 datalad: doc/bugs/Too_difficult_if_not_impossible_to_explicitly_add__47__keep_file_under_git___40__not_annex__41___in_v6_without_employing_.gitattributes.mdwn
	2018-12-11 repronim: doc/bugs/Unable_to_addurl_file__58____47____47____47___on_Windows.mdwn
	2019-04-10 repronim: doc/bugs/Unable_to_get__47__addurl_to_http_link__58___download_failed__58___InvalidHeader___34__preload__34__.mdwn
	2019-09-19 repronim: doc/bugs/add_--json_should_provide_a___34__note__34___with_an_error_message_in_case_of_an_error.mdwn
	2016-11-20 datalad: doc/bugs/adds_file_destined_for_annex_into_git_in___39__addurl__39__.mdwn
	2016-01-12 datalad: doc/bugs/addurl_--batch__--with-files_doesn__39__t_add_file_into_git_until_pipe_is_closed.mdwn
	2016-01-15 datalad: doc/bugs/addurl_--batch___40__--json_or_not__41___doesn__39__t_report_failure_correctly_if_non-annexed_file_exists.mdwn
	2016-05-23 datalad: doc/bugs/addurl_--batch_decides_to_talk_to_ssh_remotes_for_some_reason.mdwn
	2016-01-11 datalad: doc/bugs/addurl_--file__causes_file_redownload_even_if_it_already_present.mdwn
	2019-03-18 repronim: doc/bugs/addurl_fails_with_non-youtube_url_with___34__This_url_is_supported_by_youtube-dl__44___but_youtube-dl_could_potentially_access_any_address__34__.mdwn
	2016-12-04 datalad: doc/bugs/annex_add_ignores_.-prefixed_directories.mdwn
	2017-03-22 datalad: doc/bugs/annex_doesn__39__t_fixup_symlinks_when___34__git_commit_path__95__to__95__repo__34___is_used.mdwn
	2016-07-12 datalad: doc/bugs/annex_drop_fails_to_determine_availability_on_a_http_url_redirecting_to_ftp.mdwn
	2016-04-26 datalad: doc/bugs/annex_drop_is_not___34__in_effect__34___for_load_which_was___34__addurl_--batch__34__ed_but_not_yet_committed.mdwn
	2018-09-25 datalad: doc/bugs/annex_get_-J_16_via_ssh_stalls_.mdwn
	2019-06-05 repronim: doc/bugs/annex_init_no_longer_generates_default_description.mdwn
	2018-03-27 datalad: doc/bugs/annex_metadata___40__not_--batch__39__ed__41___is_not_aware_of_files_added_via_addurls_--batch.mdwn
	2018-11-12 repronim: doc/bugs/annex_sets_remote___40__regular_http__41___to_be_ignored_while_running_in_docker_container.mdwn
	2018-02-23 datalad: doc/bugs/annex_sync___40__in_direct_mode_only__41___does_not_actually_update_local_branch__47__tree.mdwn
	2018-05-04 datalad: doc/bugs/annex_view_barfs__fatal__58___Unable_to_add___40__null__41___to_database.mdwn
	2016-09-09 datalad: doc/bugs/autoenable__61__true_seems_to_not_work_any_longer.mdwn
	2015-11-20 datalad: doc/bugs/autostart__47__git-annex.desktop_gets_resurrected.mdwn
	2016-03-29 datalad: doc/bugs/awkward_error_from_annex_whenever_operating_on_a_clone_with_submodules.mdwn
	2016-11-08 datalad: doc/bugs/cannot___34__install__34___standalone_git_annex_within_afs_mount.mdwn
	2017-03-17 datalad: doc/bugs/cannot___40__or_how__63____41___to_pass_socket_path_with_a_space_in_its_path_via_annex-ssh-options.mdwn
	2018-08-08 datalad: doc/bugs/cannot_commit___34__annex_add__34__ed_modified_file_which_switched_its_largefile_status_to_be_committed_to_git_now.mdwn
	2017-01-20 datalad: doc/bugs/clash_of_-j__in_copy_for_--json_--json-progress.mdwn
	2017-03-01 datalad: doc/bugs/copy_does_not_reflect_some_failed_copies_in_--json_output.mdwn
	2017-02-10 datalad: doc/bugs/could_standalone_copy_of_git_ship__47__deploy_hooks_samples_as_well_as_stock_git__63__.mdwn
	2015-11-12 datalad: doc/bugs/does_not_complain__47__fail_if_by_mistake_option_value_passed_within_arg_for__-c.mdwn
	2016-07-14 datalad: doc/bugs/drop_blows_on_lustre__58___SQLite3_returned_ErrorIO.mdwn
	2016-04-29 datalad: doc/bugs/dropkey_--batch_--json_--force_is_always_succesfull.mdwn
	2016-02-24 datalad: doc/bugs/duplicate_progress_reports_in_parallel___39__get__39__.mdwn
	2016-04-27 datalad: doc/bugs/encfs_support_--_shouldn__39__t_it_be_treated_as_crippled_already__63__.mdwn
	2019-08-03 repronim: doc/bugs/fails_to___96__get__96___in_parallel_for_a_freshly_clone_from_public_s3_bucket_where_versioning_info_was_forgotten.mdwn
	2019-09-02 repronim: doc/bugs/fails_to_init_under_a_directory_with_a___34__tricky__34___name.mdwn
	2017-07-26 datalad: doc/bugs/fails_to_verify_presence_via_http_while_wget_fetches_it_just_fine.mdwn
	2019-08-13 repronim: doc/bugs/fresh_build_for_neurodebian__58___test_failure.mdwn
	2017-09-13 datalad: doc/bugs/fsck_does_not_detect__47__fix_some_key_directories_correctly.mdwn
	2017-07-30 datalad: doc/bugs/get_--json_fails_whenever_plain_get_works___40__with_https_urls__41__.mdwn
	2018-03-09 datalad: doc/bugs/get_-JX__58____transfer_already_in_progress_..._for_some_files.mdwn
	2017-08-30 datalad: doc/bugs/get_-J___34__fails__34___to_get_files_with_the_same_key.mdwn
	2017-03-15 datalad: doc/bugs/get_-J_cannot_be_used_with_password-based_authentication.mdwn
	2018-02-10 datalad: doc/bugs/get_-J_from_ssh_remote_tries_to_lock_in_home_directory__63__.mdwn
	2019-07-11 repronim: doc/bugs/get_fails_to_place_v7_unlocked_file_content_into_the_file_tree_in_v7_in_repo_with_detached_HEAD.mdwn
	2018-05-06 datalad: doc/bugs/get_from_the_web_remote_fails___40__redirect__63____41___-_lack_of_further_debug_info.mdwn
	2018-09-22 datalad: doc/bugs/get_over_ssh_fails_with___fd__58__19__58___hClose__58___resource_vanished.mdwn
	2016-03-12 datalad: doc/bugs/git-annex__58___content_is_locked__while_trying_to_move_under_NFS_and_pidlock.mdwn
	2019-03-18 repronim: doc/bugs/git-annex_precommit_.__gets_stuck_after_likely_interrupted___96__annex_add__96___call.mdwn
	2016-06-02 datalad: doc/bugs/git_annex_adjust_--unlock_seems_to_cause_migration_of_a_file_to_another_backend.mdwn
	2017-02-06 datalad: doc/bugs/git_annex_info_fails_on_NFS__58___waitToSetLock__58___resource_exhausted___40__No_locks_available__41__.mdwn
	2017-10-25 datalad: doc/bugs/graft__47__graft_cleanup_commits_--_really_needed__63__.mdwn
	2018-03-05 datalad: doc/bugs/howto_guarantee_a_single_instance_of_a_special_remote__63__.mdwn
	2018-09-25 datalad: doc/bugs/impossible_to_login_to_the_website_at_times.mdwn
	2018-02-20 datalad: doc/bugs/impossible_to_perform___34__read-only__34___git_annex_info_without_write_permissions.mdwn
	2016-01-11 datalad: doc/bugs/inconsistent_output_upon_addurl_--batch_complicates_if_not_forbids_reliable_parsing_of_output.mdwn
	2015-12-21 datalad: doc/bugs/info_--json_lists_backend_usage_stats_as_a_list_of_lists.mdwn
	2018-10-11 repronim: doc/bugs/initial_get_-J_on_exported_S3_bucket_fails.mdwn
	2016-01-28 datalad: doc/bugs/lookupkey_started_to_spit_out___34__debug__34___messages_to_stdout.mdwn
	2016-02-09 datalad: doc/bugs/man_page_for_command_misses_actual_command_in_the_synopsis_for_git-annex-checkpresentkey.mdwn
	2018-11-08 repronim: doc/bugs/multiple_ssh_prompts__44___and_thread_blocked_indefinitely_in_an___63____63____63___transaction.mdwn
	2017-02-17 datalad: doc/bugs/mysterious_dependency_of_git_annex_status_output_of_the_added_file.mdwn
	2016-01-15 datalad: doc/bugs/new_whereis_--json_lost_information_about_web_urls_if_other_special_remotes_provide_them.mdwn
	2017-05-25 datalad: doc/bugs/parallel_get_can_fail_some_downloads_and_require_re-getting_.mdwn
	2016-05-01 datalad: doc/bugs/prematurely___40__can__39__t_check_offline__41___marks_remote_as_annex-ignore.mdwn
	2018-05-08 datalad: doc/bugs/regression_-_fails_to_drop_._Exit_code_11_wo_--debug__44___and_1_with_--debug.mdwn
	2017-12-06 datalad: doc/bugs/regression_-_yt__58___prefix_for___34__regular__34___urls.mdwn
	2019-08-23 repronim: doc/bugs/regression__58___fails_to_detect_need_for_pidlock_on_an_NSF_mount.mdwn
	2019-05-09 repronim: doc/bugs/regression__58___http_downloads_redirecting_to_ftp_are_no_longer_supported.mdwn
	2016-10-17 datalad: doc/bugs/remote_repository_must_be_version_6_as_well_to_have_copied_files_appear_correctly.mdwn
	2016-08-05 datalad: doc/bugs/reports_success_when_addurl_--batch__a_file_which_is_.gitignore__39__d.mdwn
	2017-09-26 datalad: doc/bugs/set_metadata_leaks_from_one___40__staged__41___key_to_another_during_rename_of_file.mdwn
	2016-02-15 datalad: doc/bugs/shouldn__39__t_keep_permissions_of_the_ssh_remote__63__.mdwn
	2016-03-09 datalad: doc/bugs/some_tests_fail_while_running_under_NFS.mdwn
	2018-09-18 datalad: doc/bugs/some_transfers_for_get_-J4_fail_over_ssh__47__rsync_and_require_retry.mdwn
	2018-09-25 datalad: doc/bugs/standalone_build_is_slightly_out_of_date.mdwn
	2015-10-28 datalad: doc/bugs/standalone_builds_shouldn__39__t_pollute___126____47__.ssh_with_helpers_merely_upon_annex_init.mdwn
	2016-05-25 datalad: doc/bugs/strips___95___from_extensions_in_E_backends__63__.mdwn
	2016-03-01 datalad: doc/bugs/thread_blocked_indefinitely_in_an_STM_transaction__while_moving_within__a_local_clone.mdwn
	2016-01-15 datalad: doc/bugs/treatment_of_largefiles_is_not_working_for_addurl_--fast___40__or_--relaxed__41__.mdwn
	2018-09-11 datalad: doc/bugs/unable_to_get_from_public_S3_remote_without_clear_reasoning_why.mdwn
	2018-09-25 datalad: doc/bugs/unclear_why_annex_fails_to_get_a_file_from_a_public_S3_bucket_where_it_exported_before.mdwn
	2016-02-08 datalad: doc/bugs/use_of_annex_in_submodule_replaces_.git_with_incorrect_symlink.mdwn
	2016-02-26 datalad: doc/bugs/using_regular_magic_file__warning_pollutes_stderr.mdwn
	2018-09-06 datalad: doc/bugs/v6_-_under_subdir__58___git_add___34__whines__34____44___git_commit___34__blows__34__.mdwn
	2018-09-12 datalad: doc/bugs/whereis_shouldn__39__t_just_crash_if_one_of_the_special_remotes___34__drivers__34___is_not_available.mdwn
	2019-01-21 repronim: doc/bugs/windows__58___autostart_for_annex_64bit_looks_under_x86.mdwn
	2016-01-18 datalad: doc/todo/--batch_for_add.mdwn
	2016-01-18 datalad: doc/todo/--batch_for_find.mdwn
	2016-01-05 datalad: doc/todo/--batch_for_info.mdwn
	2016-10-24 datalad: doc/todo/Allow_for_TRANSFER-SUCCESS_to_report_also_a_URL_where_key_could_now_be_obtained_from.mdwn
	2018-02-05 datalad: doc/todo/INFO_message_for_custom_special_remotes.mdwn
	2018-09-19 datalad: doc/todo/Natively_support_s3__58____47____47___urls___40__for_addurl__44___get__44___etc__41__.mdwn
	2016-07-28 datalad: doc/todo/__39__info_filename__39___to_provide_information_either_content_is_locally_present.mdwn
	2019-04-25 repronim: doc/todo/add_--json-progress_to___96__git_annex_add__96__.mdwn
	2016-04-22 datalad: doc/todo/add_option_to_whereis_to_avoid_network_interactions.mdwn
	2017-03-23 datalad: doc/todo/annex_add___40__-u__124__--update__41___mode.mdwn
	2016-08-05 datalad: doc/todo/annex_merge_--remotes.mdwn
	2017-02-06 datalad: doc/todo/be_able_to_specify_custom_commit_message_for_git-annex_branch_commit.mdwn
	2016-02-10 datalad: doc/todo/checkpresentkey_without_explicit_remote.mdwn
	2018-09-28 datalad: doc/todo/config_setting_to_force_--progress_reporting_for_some_git_calls.mdwn
	2018-09-27 datalad: doc/todo/configuration_option_for_default___34__mode__34___on_crippled_file_systems.mdwn
	2016-06-09 datalad: doc/todo/could_standalone___39__fixed__39___git-annex_binaries_be_prelinked__63__.mdwn
	2016-04-25 datalad: doc/todo/drop_--batch.mdwn
	2016-06-16 datalad: doc/todo/get_--batch.mdwn
	2017-07-21 datalad: doc/todo/git_annex_info___60__remote__62___does_not_list_all_the_parameters_for_the_remote.mdwn
	2016-06-09 datalad: doc/todo/git_annex_info_to_include_information_about_repo_version__63__.mdwn
	2019-04-05 repronim: doc/todo/globus_special_remote_as_a___34__transport__34___layer.mdwn
	2018-02-06 datalad: doc/todo/include_msg_with_possible_reason_why_command___40__e.g._add__41___failed_into_--json_output.mdwn
	2016-07-05 datalad: doc/todo/interface_to_the___34__progress__34___of_annex_operations.mdwn
	2018-05-22 datalad: doc/todo/machine_readable_information_about_reason_of_failure_in_enableremote.mdwn
	2015-11-02 datalad: doc/todo/make_addurl_respect_annex.largefiles_option.mdwn
	2016-02-15 datalad: doc/todo/make_annex_info_more_efficient.mdwn
	2016-05-19 datalad: doc/todo/make_copy_--fast__faster.mdwn
	2016-02-12 datalad: doc/todo/metadata_--batch.mdwn
	2017-02-16 datalad: doc/todo/output_of_wanted___40__and_possibly_group_etc__41___should_not_be_polluted_with___34__informational__34___messages.mdwn
	2014-12-18 datalad: doc/todo/parallel_get.mdwn
	2018-09-28 datalad: doc/todo/prevent_directly_printing_to_stderr_error_from_an_attempt_to_download_remote___47__config_file.mdwn
	2018-08-04 datalad: doc/todo/provide___39__file__39___in_--json-progress_record_for_addurl.mdwn
	2019-01-25 repronim: doc/todo/publicurl_config_for_all_special_remotes.mdwn
	2016-01-19 datalad: doc/todo/return___34__key__34___entry_in_--json_output_for_addurl___40__and_future_add__41___--batch.mdwn
	2019-01-25 repronim: doc/todo/some_way_to_get_a_list_of_options_for_a_special_remote_of_a_given_type.mdwn
	2018-04-28 datalad: doc/todo/support___126____47__.netrc_for_http_access_authentication_specs_as_was_done_when_wget_was_used.mdwn
	2018-01-12 datalad: doc/todo/support_ssh__58____47____47___or_sftp__58____47____47___urls_via___34__built-in__34___ssh_support.mdwn
	2016-08-05 datalad: doc/todo/sync_--branches__to_sync_only_specified_branches___40__e.g._git-annex__41__.mdwn
	2016-10-28 datalad: doc/todo/unlock_--json.mdwn
	2016-10-17 datalad: doc/todo/unlock_--read-only.mdwn
 2019-09-21 21:26:15 -04:00
Joey Hess
829ba8e77b
comment 2019-09-20 12:44:15 -04:00
Joey Hess
2282ba0206
close 2019-09-20 12:11:55 -04:00
Ilya_Shlyakhter
cf08c30461 added an issue where commands on unlocked, changed file use its old key 2019-09-19 19:09:31 +00:00
Ilya_Shlyakhter
88fa21b0fe added note that unlocked files with annex.thin should not count as trusted copies 2019-09-19 18:59:44 +00:00
Ilya_Shlyakhter
1c93a14a2b added bug where annex.thin creates what looks like corrupt data 2019-09-19 18:53:00 +00:00
yarikoptic
7e8463ab0b initial report channeled from datalad/issues 2019-09-19 18:40:03 +00:00
Ilya_Shlyakhter
225e0ae105 removed 2019-09-18 20:40:54 +00:00
Ilya_Shlyakhter
b33a2f3fff added small bug report about message printed by git-annex-version 2019-09-18 20:25:43 +00:00
lykos@d125a37d89b1cfac20829f12911656c40cb70018
6842443c5b Added a comment 2019-09-18 20:20:34 +00:00
lykos@d125a37d89b1cfac20829f12911656c40cb70018
db376fe17f 2019-09-18 20:01:35 +00:00
lykos@d125a37d89b1cfac20829f12911656c40cb70018
65f9623f02 2019-09-18 19:42:48 +00:00
Joey Hess
fb318c034c
appears already fixed 2019-09-18 13:47:01 -04:00
Joey Hess
7ae8814d42
close, fixed by ghc 2019-09-18 13:24:57 -04:00
Joey Hess
033e4a02df
close 2019-09-18 13:22:30 -04:00
Joey Hess
d979c7134f
close, fixed in git 2019-09-18 12:56:16 -04:00
Joey Hess
07a936e99b
fix misplaced comment file 2019-09-18 12:55:29 -04:00
Joey Hess
7b72a44696
comment 2019-09-18 12:44:03 -04:00
Ilya_Shlyakhter
398c7dd60e removed 2019-09-16 20:41:51 +00:00
Ilya_Shlyakhter
d9f2e3fbf9 added doc bug report for annex.addunlocked 2019-09-16 20:25:20 +00:00
Joey Hess
27bfcbc02b
followup 2019-09-16 13:43:46 -04:00
Joey Hess
a69d87e984
response 2019-09-16 13:35:22 -04:00
Joey Hess
4a28d5fd66
fixed i386ancient tarball git version to work with v7 2019-09-16 13:17:41 -04:00
Joey Hess
7ca8941b3f
comment 2019-09-13 12:52:46 -04:00
oliv5
05bc379104 2019-09-12 21:15:05 +00:00
Joey Hess
eae5e96473
Merge branch 'v7-default' 2019-09-12 13:47:55 -04:00
Joey Hess
f41c5fa4ae
comment 2019-09-11 15:50:57 -04:00
yarikoptic
c93021ac44 Added a comment 2019-09-11 18:03:12 +00:00
Joey Hess
9317c4a5b3
close all old direct mode issues 
except for one issue that was not really specific to direct mode after
all
 2019-09-11 13:44:17 -04:00
Joey Hess
753db08973
fixed in process library 2019-09-11 13:10:31 -04:00
Joey Hess
94c75d2bd9
init: Fix a reversion that broke initialization on systems that need to use pid locking 
This brings back .git/annex/misctmp, but only for init. If an init
is interrupted while probing using that temp directory, the files it left
will get deleted 1 week later by a subsequent git-annex run.
 2019-09-10 13:37:07 -04:00
Joey Hess
f9f9215d2c
Merge branch 'master' of ssh://git-annex.branchable.com 2019-09-09 15:12:37 -04:00
Joey Hess
f51ebe20aa
forwarded 2019-09-09 15:11:53 -04:00
Ilya_Shlyakhter
267cc39402 Added a comment: git and submodule configs 2019-09-09 18:47:41 +00:00
Joey Hess
63e37b0beb
analysis 2019-09-09 09:44:47 -04:00
Joey Hess
5197a222aa
analysis 2019-09-09 09:43:25 -04:00
yarikoptic
029a952726 Added a comment: archaeological expedition summary 2019-09-09 12:53:17 +00:00
https://tribut.de/
fad7f3096b Added a comment 2019-09-09 09:01:26 +00:00
flixh
ecae180dfe 2019-09-07 12:45:38 +00:00
flixh
d5b5f31107 Added a comment 2019-09-07 11:44:47 +00:00
Joey Hess
e78050c808
followup 2019-09-06 12:31:01 -04:00
Ilya_Shlyakhter
37274b6853 Added a comment: another trace of concurrent copy failure 2019-09-05 06:09:13 +00:00
Ilya_Shlyakhter
eeaa2b44cd added issue re: output of error messages with --json-error-messages 2019-09-03 18:20:34 +00:00
Ilya_Shlyakhter
8acd01334c bug report where git-annex-copy fails with "thread blocked indefinitely in an STM transaction" 2019-09-02 18:26:28 +00:00
Ilya_Shlyakhter
62723b7c45 Added a comment 2019-09-02 15:49:57 +00:00
yarikoptic
c83526fed7 Added a comment: the issue persists in master 2019-09-02 14:17:14 +00:00
yarikoptic
8bc27a5cd7 removed 2019-09-02 14:14:11 +00:00
yarikoptic
3e93585ccc Added a comment: the issue remains (if there were any fixed introduced) 2019-09-02 14:13:07 +00:00
yarikoptic
f951a62210 initial report on problems with unicode directories 2019-09-02 11:52:27 +00:00
lykos@d125a37d89b1cfac20829f12911656c40cb70018
bc2cfe2483 2019-09-01 17:10:32 +00:00
yarikoptic
8859e785c3 Added a comment 2019-08-31 13:00:57 +00:00
Joey Hess
1558e03014
Refuse to upgrade direct mode repositories when git is older than 2.22 
That git fixed a memory leak that could cause an OOM during the upgrade.

Most git-annex builds have a new enough git already.
OSX git was upgraded with brew.

Linux i386ancient build's git was too old. Upgrading it to a fixed
git didn't work (due to the newer git not working with the old ssh,
https://bugs.chromium.org/p/git/issues/detail?id=7 )

Choices to deal with that were:

* Somehow make direct mode upgrade work with the old git, avoiding its
  OOM problem. One way would be to switch the repo to indirect mode
  first, and so upgrade to a repo with locked files. Not good when
  the filesystem does not support symlinks.
* backport the OOM fix from git 2.22
  (And do what about the version number so git-annex knows it's fixed?)
* backport openssh (and possibly more stuff)
* move the i386ancient build to at least Debian stretch (still backporting git)
  But this will make it no longer work with some of the ancient kernels it
  targets.

Of those, backporting the OOM fix seemed the best approach. Put "oomfix"
in the git version number to indicate it.

I have not automated building the git backport, so here's the patch I
used:

diff -ur orig/git-2.1.4/convert.c git-2.1.4/convert.c
--- orig/git-2.1.4/convert.c	2014-12-18 18:42:18.000000000 +0000
+++ git-2.1.4/convert.c	2019-08-29 20:05:04.371872338 +0100
@@ -404,7 +404,7 @@
 	if (start_async(&async))
 		return 0;	/* error was already reported */

-	if (strbuf_read(&nbuf, async.out, len) < 0) {
+	if (strbuf_read(&nbuf, async.out, 0) < 0) {
 		error("read from external filter %s failed", cmd);
 		ret = 0;
 	}
diff -ur orig/git-2.1.4/GIT-VERSION-GEN git-2.1.4/GIT-VERSION-GEN
--- orig/git-2.1.4/GIT-VERSION-GEN	2014-12-18 18:42:18.000000000 +0000
+++ git-2.1.4/GIT-VERSION-GEN	2019-08-29 20:06:39.132743228 +0100
@@ -1,7 +1,7 @@
 #!/bin/sh

 GVF=GIT-VERSION-FILE
-DEF_VER=v2.1.4
+DEF_VER=v2.1.4.oomfix

 LF='
 '
diff -ur orig/git-2.1.4/configure git-2.1.4/configure
--- orig/git-2.1.4/configure	2014-12-18 18:42:19.000000000 +0000
+++ git-2.1.4/configure	2019-08-29 20:27:45.896380015 +0100
@@ -580,8 +580,8 @@
 # Identity of this package.
 PACKAGE_NAME='git'
 PACKAGE_TARNAME='git'
-PACKAGE_VERSION='2.1.4'
-PACKAGE_STRING='git 2.1.4'
+PACKAGE_VERSION='2.1.4.oomfix'
+PACKAGE_STRING='git 2.1.4.oomfix'
 PACKAGE_BUGREPORT='git@vger.kernel.org'
 PACKAGE_URL=''

diff -ur orig/git-2.1.4/version git-2.1.4/version
--- orig/git-2.1.4/version	2014-12-18 18:42:19.000000000 +0000
+++ git-2.1.4/version	2019-08-29 20:06:17.572545210 +0100
@@ -1 +1 @@
-2.1.4
+2.1.4.oomfix
 2019-08-29 15:24:41 -04:00
Joey Hess
c83c82a9c4
followup 2019-08-29 13:25:22 -04:00
Joey Hess
d6e1f09ed2
init: Catch more exceptions when testing locking. 2019-08-29 12:19:07 -04:00
Joey Hess
6b27fc58d0
v7 bug review and cleanup 2019-08-28 12:20:30 -04:00
Joey Hess
7f2bf5a802
followup 2019-08-27 15:41:31 -04:00
Joey Hess
11e3b2397c
update location log for missing content during direct mode conversion 
If a direct mode file is deleted or modified, and there are no other
files containing the content, the content was lost. That's a normal
thing that can happen in direct mode, but not in v7, so the upgrade
code has to notice it in order for the location log to be accurate.
 2019-08-27 13:54:21 -04:00
Joey Hess
3a0842d9f8
fix bug introduced in direct mode conversion 
oops, the code was "if direct && not present" and I removed the direct
which made the wrong path be taken.
 2019-08-27 12:29:05 -04:00
Joey Hess
af8a73d539
noticed a problem 2019-08-26 16:41:24 -04:00
yarikoptic
9531f5b6d4 initial report about regression failing to detect need for pidlock 2019-08-23 14:16:11 +00:00
Ilya_Shlyakhter
afe5be0463 Added a comment: another instance of git-annex-sync not being idempotent 2019-08-20 17:08:45 +00:00
Joey Hess
a6933e1629
Merge branch 'master' of ssh://git-annex.branchable.com 2019-08-16 14:09:27 -04:00
Joey Hess
7f97575941
Makefile: Changed default zsh completion location to zsh default fpath. 
Systems such as Debian that have overridden the default fpath will need to
set ZSH_COMPLETIONS_PATH.

I feel that Debian is causing unncessary complexity by making this change,
and have filed a bug report about it.

This also means that when git-annex is installed with PREFIX=/usr/local
it will use /usr/local/share/zsh/site-functions which works with probably
all versions of zsh.
 2019-08-16 14:08:56 -04:00
Ilya_Shlyakhter
09f79e5256 Added a comment: storing checksums for non-checksum keys in metadata 2019-08-16 16:06:29 +00:00
Ilya_Shlyakhter
41fee0b0fc removed 2019-08-16 16:03:41 +00:00
Ilya_Shlyakhter
9f62583717 Added a comment: storing checksums for non-checksum keys in metadata 2019-08-16 16:02:41 +00:00
Joey Hess
b532d69498
add missing build dep of install-completions 
Since it runs git-annex to generate the completions files.
 2019-08-16 11:42:00 -04:00
Joey Hess
206f9ad7c0
add comment 2019-08-16 11:36:33 -04:00
Joey Hess
fa62c32233
Fix intermittent failure of the test suite 
Its repeated opening and writing to the sqlite database somehow caused
inode cache information to occasionally be lost.

This loses code coverage, since running git-annex as a child process
prevents tracking what parts of the code are exercised. I have not looked
at the code coverage in a long time. It would probably be possible to
collect code coverage for the child procesess and merge it together.
 2019-08-16 11:11:55 -04:00
Joey Hess
83cdc511da
use GHC not ghc 2019-08-16 11:00:28 -04:00
https://launchpad.net/~felixonmars
14b2a257fb 2019-08-16 07:25:29 +00:00
Joey Hess
b68198d7be
Merge branch 'master' of ssh://git-annex.branchable.com 2019-08-15 21:44:29 -04:00
Joey Hess
61bc26dc40
comment 2019-08-15 21:44:14 -04:00
eschwartz@5abb721e66990e478c7d1caf96beb4f9794eb168
c131c0f0c5 2019-08-15 22:46:53 +00:00
Joey Hess
7cd2120b23
Merge branch 'master' of ssh://git-annex.branchable.com 2019-08-15 17:45:05 -04:00
Joey Hess
be52546af6
update 2019-08-15 17:30:38 -04:00
Joey Hess
8e2396fcff
bug 2019-08-15 17:17:59 -04:00
eschwartz@5abb721e66990e478c7d1caf96beb4f9794eb168
7a0ed9dc75 Added a comment 2019-08-15 21:15:09 +00:00
Joey Hess
94e57a7fbc
comment 2019-08-15 15:19:57 -04:00
Joey Hess
c8cca57b3b
Merge branch 'master' of ssh://git-annex.branchable.com 2019-08-15 14:48:13 -04:00
Joey Hess
69cefe8190
followup and display rsync exit status 2019-08-15 14:47:22 -04:00
eschwartz@5abb721e66990e478c7d1caf96beb4f9794eb168
5e5d0e54ca New bug for zsh-completion. 2019-08-15 18:09:47 +00:00
Joey Hess
708fc6567f
S3: Fix encoding when generating public urls of S3 objects. 
This code feels worryingly stringily typed, but using URI does not help
because the uriPath still has to be constructed with the right
uri-encoding.
 2019-08-15 12:56:46 -04:00
Joey Hess
83fc72653b
Merge branch 'master' of ssh://git-annex.branchable.com 2019-08-15 12:37:32 -04:00
Joey Hess
e6c7778345
bug 2019-08-15 12:37:12 -04:00
Ilya_Shlyakhter
cb60968660 Added a comment 2019-08-14 18:40:50 +00:00
Joey Hess
37f5f00923
fixed 2019-08-13 16:45:24 -04:00
Joey Hess
96a5d7c4fc
comment 2019-08-13 15:15:55 -04:00
Joey Hess
d8a0b09506
Merge branch 'master' of ssh://git-annex.branchable.com 2019-08-13 15:14:22 -04:00
Joey Hess
dc672863c3
init: Install working hook scripts when run on a crippled filesystem and on Windows 2019-08-13 15:14:17 -04:00
yarikoptic
05d85c757a Added a comment 2019-08-13 18:15:36 +00:00
Joey Hess
4a4a5dd5f9
comment 2019-08-13 13:36:33 -04:00
Joey Hess
386c0ce90a
close handle so windows can stat the file 
windows cannot stat a file that another process has open, which caused
this to crash with an exception
 2019-08-13 13:26:25 -04:00
Joey Hess
a95de6bcc7
reply 2019-08-13 12:54:46 -04:00
yarikoptic
0e856fd3c2 Original report 2019-08-13 15:53:37 +00:00
Ilya_Shlyakhter
070fbd693e added bug report where git-annex-sync seems not idempotent 2019-08-12 20:50:07 +00:00
yarikoptic
88a78b7d90 Added a comment 2019-08-12 20:15:02 +00:00
Joey Hess
5798d063b0
make test_export_import work on adjusted branch 2019-08-09 14:00:22 -04:00
Joey Hess
69a5b5a27f
bug report 2019-08-08 15:11:56 -04:00
Joey Hess
298812a353
use separate main repo dir for each test suite pass 
This way a failure to clean up the main repo dir from a previous pass
can't result in reusing that repo, which won't be configured right for the
current pass.
 2019-08-08 14:29:28 -04:00
Joey Hess
70b71bf660
have init --version fail when repo is already initialized with other version 
init: When the repo is already initialized, and --version requests a
different version, error out rather than silently not changing the version.
 2019-08-08 14:13:02 -04:00
Joey Hess
022875274a
bug 2019-08-08 13:34:58 -04:00
Joey Hess
9e230cd448
work around adjusted unlocked branch problem in test suite 2019-08-08 13:28:04 -04:00
Joey Hess
7598cc6362
fixed 2019-08-07 18:00:49 -04:00
Joey Hess
3adc251f9d
Build with silently-1.2.5.1 on Windows; the old one used "NUL" which is not supported with recent versions of ghc. 2019-08-07 17:42:16 -04:00
Joey Hess
8042ae7eaa
comment 2019-08-07 14:05:20 -04:00
Ilya_Shlyakhter
890a51485e Added a comment: similar bug report 2019-08-05 17:55:21 +00:00