mirrors/git-annex
2
0
Fork 0
Code Issues Pull requests Projects Releases Packages 1 Wiki Activity Actions

Merge branch 'master' of ssh://git-annex.branchable.com

Browse source
This commit is contained in:
Joey Hess 2019-09-09 15:12:37 -04:00
commit f9f9215d2c
No known key found for this signature in database
GPG key ID: DB12DB0FF05F8F38
2 changed files with 64 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

63
doc/bugs/git-annex-sync_not_quite_idempotent__63__/comment_5_86187583d3128f2d64d1c5d58b31283c._comment Normal file
View file

@ -0,0 +1,63 @@
[[!comment format=mdwn
username="Ilya_Shlyakhter"
avatar="http://cdn.libravatar.org/avatar/1647044369aa7747829c38b9dcc84df0"
subject="git and submodule configs"
date="2019-09-09T18:47:41Z"
content="""
Here is the git config:
[[!format sh \"\"\"
(master_env_v156_py36) 14:35 [viral-ngs-benchmarks] $ git config -l | grep annex- | grep -v uuid
remote.origin.annex-ignore=true
remote.ilya-work.annex-speculate-present=true
remote.ilya-work.annex-readonly=true
remote.ilya-work.annex-sync=false
remote.dnanexus.annex-externaltype=dnanexus
remote.dnanexus.annex-cost=100.0
remote.dnanexus.annex-availability=GloballyAvailable
remote.dnanexus.annex-security-allow-unverified-downloads=ACKTHPPT
remote.dnanexus.annex-sync=false
remote.dnanexus.annex-ignore=false
remote.viral-ngs-benchmarks-s3.annex-s3=true
remote.my-ldir.annex-externaltype=ldir
remote.my-ldir.annex-cost=200.0
remote.my-ldir.annex-availability=LocallyAvailable
remote.from-ilya-work.annex-externaltype=canget
remote.from-ilya-work.annex-readonly=true
remote.from-ilya-work.annex-sync=false
remote.from-ilya-work.annex-ignore=true
remote.from-ilya-work-01.annex-externaltype=canget
remote.from-ilya-work-01.annex-ignore=true
remote.from-ilya-work-01.annex-cost=200.0
remote.from-ilya-work-01.annex-availability=LocallyAvailable
remote.from-ilya-work-01.annex-readonly=true
remote.from-ilya-work-01.annex-sync=false
remote.from-ilya-work-02.annex-externaltype=canget
remote.from-ilya-work-02.annex-readonly=true
remote.from-ilya-work-02.annex-sync=false
remote.from-ilya-work-02.annex-ignore=true
remote.from-ilya-work-03.annex-externaltype=canget
remote.from-ilya-work-03.annex-cost=200.0
remote.from-ilya-work-03.annex-availability=GloballyAvailable
remote.from-ilya-work-03.annex-speculate-present=true
remote.mygs.annex-externaltype=gs_uri
remote.mygs.annex-cost=400.0
remote.mygs.annex-availability=GloballyAvailable
remote.s3-viral-ngs-benchmarks-web.annex-s3=true
\"\"\"]]
\"stderr output is sometimes appearing before stdout output that actually comes first\" -- probably from running in an Emacs shell terminal. But the `git-annex-sync` commands were entered by hand, not in a script, so earlier commands' output is earlier.
\"the second sync found one modified file to commit, so something must have modified that file in between the two sync runs\" -- could the first sync run have somehow modified it?
If relevant, this git-annex repo has one submodule, configured as
[[!format sh \"\"\"
[submodule \"viral-ngs\"]
path = viral-ngs
url = git@github.com:broadinstitute/viral-ngs.git
branch = is-dx-benchmarks
\"\"\"]]
Maybe, add test cases for `git-annex-sync` on repos with submodules?
"""]]

1
doc/forum/people__39__s_experience_with_parallel_git-annex_operations.mdwn Normal file
View file

@ -0,0 +1 @@
Have others experienced frequent failures of parallel/concurrent git-annex operations, like ones described in [[bugs/concurrent_git-annex-copy_to_s3_special_remote_fails/]] and [[bugs/parallel_copy_fails/]]? I'm trying to understand if there is something specific to my system that makes these failures more likely. Thanks!