Seem there are several races that happen when 2 threads run PidLock.tryLock
at the same time. One involves checkSaneLock of the side lock file, which may
be deleted by another process that is dropping the lock, causing checkSaneLock
to fail. And even with the deletion disabled, it can still fail, Probably due
to linkToLock failing when a second thread overwrites the lock file.
The same can happen when 2 processes do, but then one process just fails
to take the lock, which is fine. But with 2 threads, some actions where failing
even though the process as a whole had the pid lock held.
Utility.LockPool.PidLock already maintains a STM lock, and since it uses
LockShared, 2 threads can hold the pidlock at the same time, and when
the first thread drops the lock, it will remain held by the second
thread, and so the pid lock file should not get deleted until the last
thread to hold it drops the lock. Which is the right behavior, and why a
LockShared STM lock is used in the first place.
The problem is that each time it takes the STM lock, it then also calls
PidLock.tryLock. So that was getting called repeatedly and concurrently.
Fixed by noticing when the shared lock is already held, and stop calling
PidLock.tryLock again, just use the pid lock that already exists then.
Also, LockFile.PidLock.tryLock was deleting the pid lock when it failed
to take the lock, which was entirely wrong. It should only drop the side
lock.
Sponsored-by: Dartmouth College's Datalad project
This fixes a reversion introduced in commit
ac56a5c2a0.
I didn't notice there that it was handling the case of a shared lock
file that was still open elsewhere by not running the close action.
This was especially deadly when annex.pidlock is set, as it caused early
deletion of the pid lock file.
Sponsored-by: Dartmouth College's Datalad project
It ought to exist, since linkToLock has just created it. However,
Lustre seems to have a rather probabilisitic view of the contents of a
directory, so catching the error if it somehow does not exist and
running the same code path that would be ran if linkToLock failed
might avoid this fun Lustre failure.
Sponsored-by: Dartmouth College's Datalad project
git-lfs: Fix interoperability with gitlab's implementation of the git-lfs
protocol, which requests Content-Encoding chunked.
Sponsored-by: Dartmouth College's Datalad project
Caused by dirContains ".." "foo" being incorrectly False.
Also added a test of dirContains, which includes all the previous bug fixes
I could find and some obvious cases.
Reversion in version 8.20211011
Sponsored-by: Brett Eisenberg on Patreon
When the progress display gets longer, and then shorter again, it causes
the cursor to jitter back and forth. Somehow I never noticed this until
this morning, but then it became intolerable to watch.
To fix it, pad the progress display to the maximum length it's occupied.
Sponsored-by: Svenne Krap on Patreon
dirContains ".." "../.." was incorrectly True.
This does not seem to be an exploitable security hole, at least
as dirContains is used in git-annex.
Sponsored-by: Jochen Bartl on Patreon
This method avoids breaking test_readonly. Just check if the dest file
exists, and avoid CoW probing when it does, so when CoW probing fails,
it can resume where the previous non-CoW copy left off.
If CoW has been probed already to work, delete the dest file
since a CoW copy will presumably work. It seems like it would be almost
as good to just skip CoW copying in this case too, but consider that the
dest file might have started to be copied from some other remote, not
using CoW, but CoW has been probed to work to copy from the current
place.
Sponsored-by: Dartmouth College's Datalad project
commit 63d508e885 broke test_readonly.
When a local git remote is readonly, tryCopyCoW run to copy a file
from it failed at withOtherTmp.
Sponsored-by: Dartmouth College's Datalad project
I first saw this getting with -J2 over ssh, but later saw it also
without the -J2. It was resuming, and the calulated unboundDelay was
many minutes. The first update of the meter jumped to some large value,
because of the resuming, and so it thought the BW was super fast.
Avoid by waiting until the second meter update.
Might be a good idea to also guard for the delay being many seconds
and avoid waiting. But how many? If BW is legitimately super fast, and a
remote happens to read more than a 32kb or so chunk at a time, it could
in theory download megabytes or gigabytes of data before the first meter
update. It would actually be appropriate then to delay for a long time,
if the desired BW was low. Could make up some numbers that are sane now,
but tech may improve.
(BTW, pleased to see bwlimit does work with -J. I had worried that
it might not, if the meter update happened in a different thread than
the downloading, but it's done in the same thread.)
Sponsored-by: Brett Eisenberg on Patreon
New method is much better. Avoids unrestrained transfer at the beginning
(except for the first block. Keeps right at or a few kb/s below the
configured limit, with very little varation in the actual reported bandwidth.
Removed the /s part of the config as it's not needed.
Ready to merge.
Sponsored-by: Luke Shumaker on Patreon
Probably this fixes a reversion, but I don't know what version broke it.
This does use withOtherTmp for a temp file that could be quite large.
Though albeit a reflink copy that will not actually take up any space
as long as the file it was copied from still exists. So if the copy cow
succeeds but git-annex is interrupted just before that temp file gets
renamed into the usual .git/annex/tmp/ location, there is a risk that
the other temp directory ends up cluttered with a larger temp file than
later. It will eventually be cleaned up, and the changes of this being
a problem are small, so this seems like an acceptable thing to do.
Sponsored-by: Shae Erisson on Patreon
Added annex.bwlimit and remote.name.annex-bwlimit config that works for git
remotes and many but not all special remotes.
This nearly works, at least for a git remote on the same disk. With it set
to 100kb/1s, the meter displays an actual bandwidth of 128 kb/s, with
occasional spikes to 160 kb/s. So it needs to delay just a bit longer...
I'm unsure why.
However, at the beginning a lot of data flows before it determines the
right bandwidth limit. A granularity of less than 1s would probably improve
that.
And, I don't know yet if it makes sense to have it be 100ks/1s rather than
100kb/s. Is there a situation where the user would want a larger
granularity? Does granulatity need to be configurable at all? I only used that
format for the config really in order to reuse an existing parser.
This can't support for external special remotes, or for ones that
themselves shell out to an external command. (Well, it could, but it
would involve pausing and resuming the child process tree, which seems
very hard to implement and very strange besides.) There could also be some
built-in special remotes that it still doesn't work for, due to them not
having a progress meter whose displays blocks the bandwidth using thread.
But I don't think there are actually any that run a separate thread for
downloads than the thread that displays the progress meter.
Sponsored-by: Graham Spencer on Patreon
This was maybe a real bug too, although I don't know what circumstances
it would be a problem. See comment for analysis of this windows drive
letter wackyness issue.
Sponsored-by: Brock Spratlen on Patreon
This is to track down what file in .git/annex/ is being written to via a
temp file when the repository is read-only.
Sponsored-by: Dartmouth College's Datalad project
Except when configuration makes curl be used. It did not seem worth
trying to tail the file when curl is downloading.
But when an interrupted download is resumed, it does not read the whole
existing file to hash it. Same reason discussed in
commit 7eb3742e4b76d1d7a487c2c53bf25cda4ee5df43; that could take a long
time with no progress being displayed. And also there's an open http
request, which needs to be consumed; taking a long time to hash the file
might cause it to time out.
Also in passing implemented it for git and external special remotes when
downloading from the web. Several others like S3 are within striking
distance now as well.
Sponsored-by: Dartmouth College's DANDI project
IncrementalVerifier moved to Utility.Hash, which will let Utility.Url
use it later.
It's perhaps not really specific to hashing, but making a separate
module just for the data type seemed unncessary.
Sponsored-by: Dartmouth College's DANDI project
This eliminates the distinction between decodeBS and decodeBS', encodeBS
and encodeBS', etc. The old implementation truncated at NUL, and the
primed versions had to do extra work to avoid that problem. The new
implementation does not truncate at NUL, and is also a lot faster.
(Benchmarked at 2x faster for decodeBS and 3x for encodeBS; more for the
primed versions.)
Note that filepath-bytestring 1.4.2.1.8 contains the same optimisation,
and upgrading to it will speed up to/fromRawFilePath.
AFAIK, nothing relied on the old behavior of truncating at NUL. Some
code used the faster versions in places where I was sure there would not
be a NUL. So this change is unlikely to break anything.
Also, moved s2w8 and w82s out of the module, as they do not involve
filesystem encoding really.
Sponsored-by: Shae Erisson on Patreon
Eg, showImprecise 1 1.99 returned "1.1" rather than "2". The 9 rounded
upward to 10, and that was wrongly used as the decimal, rather than
carrying the 1.
Sponsored-by: Jack Hill on Patreon
Clear visible progress bar first.
Removed showSideActionAfter because it can't be used in reconcileStaged
(import loop). Instead, it counts the number of files it
processes and displays it after it's seen a sufficient to know it's
taking a while.
Sponsored-by: Dartmouth College's Datalad project
Avoids users thinking this scan is a big deal, when it's not in the
majority of repos.
showSideActionAfter has some ugly caveats, since it has to display in
the background of another action. I could not see a better way to do it
and it works fine in this particular case. It also doesn't really belong
in Annex.Concurrent, but cannot go in Messages due to an import loop.
Sponsored-by: Dartmouth College's Datalad project
ghc 8.8.4 seems to have changed something that broke code that has been
successfully using forkProcess since 2012. Likely a change to GC internals.
Since forkProcess has never had clear documentation about how to
use it safely, avoid using it at all. Instead, when git-annex needs to
daemonize itself, re-run the git-annex command, in a new process group
and session.
This commit was sponsored by Luke Shumaker on Patreon.
Fix behavior of several commands, including reinject, addurl, and rmurl
when given an absolute path to an unlocked file, or a relative path that
leaves and re-enters the repository.
To avoid slowing down all the cases where the paths are already ok
with an unncessary call to getCurrentDirectory, put in an optimisation
in relPathCwdToFile. That will probably also speed up other parts of
git-annex by some small amount, but I have not benchmarked.
Note that I did not convert branchFileRef, because it seems likely that
it will be used with a file that is not provided by the user, so is already
in a sane format. This is certainly true for the way git-annex uses it,
though maybe arguable to the extent Git.Ref is a reusable library.
This uses a DebugSelector, rather than debug levels, which will allow
for a later option like --debug-from=Process to only
see debuging about running processes.
The module name that contains the thing being debugged is used as the
DebugSelector (in most cases; does not need to be a hard and fast rule).
Debug calls were changed to add that. hslogger did not display
that first parameter to debugM, but the DebugSelector does get
displayed.
Also fastDebug will allow doing debugging in places that are used in
tight loops, with the DebugSelector coming from the Annex Reader
essentially for free. Not done yet.
New error message:
Remote foo not usable by git-annex; setting annex-ignore
http://localhost/foo/config download failed: Configuration of annex.security.allowed-ip-addresses does not allow accessing address ::1
If git config parse fails, or the git config file is not available at the url,
a better error message for that is also shown.
This commit was sponsored by Mark Reidenbach on Patreon.
Checksum as content is received from a remote git-annex repository, rather
than doing it in a second pass.
Not tested at all yet, but I imagine it will work!
Not implemented for any special remotes, and also not implemented for
copies from local remotes. It may be that, for local remotes, it will
suffice to use rsync, rely on its checksumming, and simply return Verified.
(It would still make a checksumming pass when cp is used for COW, I guess.)
As yet unused.
Backend.External could perhaps implement it too, although that would
involve sending chunks of data to it via a pipe or something, so likely
to be slow.
Note this does find things in PATH that are not executable.
Like searchPath use, the executable bit is not checked. Thing is,
there does not seem to be a binding for access(), which would be the
right way to check that the right execute bit is set. Anyway, if it's in
PATH and it's a file, it's probably fine to treat it as something that
was intended to be executable.
This commit was sponsored by Brock Spratlen on Patreon.
Fix an oddity in matching options and preferred content expressions such as
"foo (bar or baz)", which was incorrectly handled as if it were "(foo or
bar) and baz)" rather than the intended "foo and (bar or baz)"
Seemed like a change to consume should be able to handle this case
better, but I was having trouble writing it that way, so instead added
a separate pass that inserts the implicit ands explicitly. Also added
several test cases to make sure versions with and without explicit ands
generate the same.
Seems that dropDrive on windows only drops eg c:/ but not a leading /
while on linux, it does drop a leading / (which is what it considers
to be equivilant to a drive letter. I had been relying on it to drop
both. So need to drop leading directory separators.
Also, if the quickcheck generated input is eg "c:c:c:c:foo",
dropDrive will only drop the first one, leaving a path that's
still not relative. So instead of using dropDrive, just remove the
colons from the path.
