Commit graph

142 commits

Author SHA1 Message Date
Joey Hess
a1730cd6af
adeiu, MissingH
Removed dependency on MissingH, instead depending on the split
library.

After laying groundwork for this since 2015, it
was mostly straightforward. Added Utility.Tuple and
Utility.Split. Eyeballed System.Path.WildMatch while implementing
the same thing.

Since MissingH's progress meter display was being used, I re-implemented
my own. Bonus: Now progress is displayed for transfers of files of
unknown size.

This commit was sponsored by Shane-o on Patreon.
2017-05-16 01:03:52 -04:00
Edward Betts
0750913136
correct spelling mistakes 2017-02-12 17:30:23 -04:00
Joey Hess
339464e847
config: New command for storing configuration in the git-annex branch.
Any config names can be set using this; git-annex commands will only look
at specific ones that make sense and are worth the overhead of querying the
branch.

This might also be useful for storing whatever other config-type stuff the
user might want to shove into the git-annex branch.

This commit was sponsored by Jochen Bartl on Patreon.
2017-01-30 16:46:38 -04:00
Joey Hess
8484c0c197
Always use filesystem encoding for all file and handle reads and writes.
This is a big scary change. I have convinced myself it should be safe. I
hope!
2016-12-24 14:46:31 -04:00
Joey Hess
0a4479b8ec
Avoid backtraces on expected failures when built with ghc 8; only use backtraces for unexpected errors.
ghc 8 added backtraces on uncaught errors. This is great, but git-annex was
using error in many places for a error message targeted at the user, in
some known problem case. A backtrace only confuses such a message, so omit it.

Notably, commands like git annex drop that failed due to eg, numcopies,
used to use error, so had a backtrace.

This commit was sponsored by Ethan Aubin.
2016-11-15 21:29:54 -04:00
Joey Hess
154c939830
Speed up startup time by caching the refs that have been merged into the git-annex branch.
This can speed up git-annex commands by as much as a second, depending on
the number of remotes.
2016-07-17 12:24:34 -04:00
Joey Hess
823c28d2dc
nub transitionList to avoid ugly message after repeated transitions, and avoid redundant work for repeated ForgetDeadRemotes transitions 2016-05-18 12:26:38 -04:00
Joey Hess
93c03b5dd5
Work around git bug in handling of relative path to GIT_INDEX_FILE when in a subdirectory of the repository.
This affected git annex view. It turns out that some other places
that use GIT_INDEX_FILE were already working around the bug. I removed the
workaround from Annex.Branch since the new workaround will do.
2016-05-17 13:29:51 -04:00
Joey Hess
b9e4e2ba84
new method for merging changes into adjusted branch that avoids unncessary merge conflicts
Still needs work when there are actual merge conflicts.
2016-04-06 15:36:18 -04:00
Joey Hess
a2b668a8f6
reuse annex's HashObjectHandle 2016-03-14 16:29:59 -04:00
Joey Hess
2d234de781
Sped up git-annex merge by using git hash-object --batch.
This does mean that it has to write out temp files containing updated
objects for the merge. So may use more disk space, and disk IO, but that
should generally win out over needing to launch N separate
git hash-object processes.
2016-03-14 16:23:22 -04:00
Joey Hess
00d9da3534
use hash-object --batch
Handle was plumbed through, but not used.
2016-03-14 16:12:55 -04:00
Joey Hess
737e45156e
remove 163 lines of code without changing anything except imports 2016-01-20 16:36:33 -04:00
Joey Hess
f9adb905fc
Avoid unncessary write to the location log when a file is unlocked and then added back with unchanged content.
Implemented with no additional overhead of compares etc.

This is safe to do for presence logs because of their locality of change;
a given repo's presence logs are only ever changed in that repo, or in a
repo that has just been actively changing the content of that repo.

So, we don't need to worry about a split-brain situation where there'd
be disagreement about the location of a key in a repo. And so, it's ok to
not update the timestamp when that's the only change that would be made
due to logging presence info.
2015-10-12 14:46:47 -04:00
Joey Hess
24800b1bf1 Only look at reflogs for relevant branches, not for git-annex branches
This speeds it up quite a bit.. May still be too slow in large repos.
2015-07-07 17:36:30 -04:00
Joey Hess
b11d2f5a8a unused: --used-refspec can now be configured to look at refs in the reflog. This provides a way to not consider old versions of files to be unused after they have reached a specified age, when the old refs in the reflog expire.
May be slow.
2015-07-07 17:13:50 -04:00
Joey Hess
f7dc20595e refactor ls-tree params
All in one place to avoid bugs like 174da80ddc
2015-07-06 14:21:43 -04:00
Joey Hess
174da80ddc bugfix: Pass --full-tree when using git ls-files to get a list of files on the git-annex branch, so it works when run in a subdirectory. This bug affected git-annex unused, and potentially also transitions running code and other things. 2015-07-06 14:09:54 -04:00
Joey Hess
eb33569f9d remove Params constructor from Utility.SafeCommand
This removes a bit of complexity, and should make things faster
(avoids tokenizing Params string), and probably involve less garbage
collection.

In a few places, it was useful to use Params to avoid needing a list,
but that is easily avoided.

Problems noticed while doing this conversion:

	* Some uses of Params "oneword" which was entirely unnecessary
	  overhead.
	* A few places that built up a list of parameters with ++
	  and then used Params to split it!

Test suite passes.
2015-06-01 13:52:23 -04:00
Joey Hess
b99b8d5d4c followup to bug I cannot reproduce, and analysis based presumptive fix 2015-04-09 14:03:44 -04:00
Joey Hess
3af4691978 Improve error message when --in @date is used and there is no reflog for the git-annex branch. 2015-03-26 11:15:15 -04:00
Joey Hess
798da6cf2e Added a post-update-annex hook, which is run after the git-annex branch is updated. Needed for git update-server-info.
See https://github.com/datalad/datalad/issues/1#issuecomment-84094406
2015-03-20 14:52:58 -04:00
Joey Hess
7fce85adac Improve race recovery code when committing to git-annex branch. 2015-02-09 18:34:48 -04:00
Joey Hess
70736d2b41 Repository tuning parameters can now be passed when initializing a repository for the first time.
* init: Repository tuning parameters can now be passed when initializing a
  repository for the first time. For details, see
  http://git-annex.branchable.com/tuning/
* merge: Refuse to merge changes from a git-annex branch of a repo
  that has been tuned in incompatable ways.
2015-01-27 17:38:06 -04:00
Joey Hess
afc5153157 update my email address and homepage url 2015-01-21 12:50:09 -04:00
Joey Hess
8a1c5956eb absolute path to index file; test suite passes
There are still known problems; for example git annex view a=b fails when
run in a subdir of the repo.
2015-01-06 17:34:02 -04:00
Joey Hess
7b50b3c057 fix some mixed space+tab indentation
This fixes all instances of " \t" in the code base. Most common case
seems to be after a "where" line; probably vim copied the two space layout
of that line.

Done as a background task while listening to episode 2 of the Type Theory
podcast.
2014-10-09 15:09:11 -04:00
Joey Hess
d9d76cf98b Fix minor FD leak in journal code.
Minor because normally only 1 FD is leaked per git-annex run. However,
the test suite leaks a few hundred FDs, and this broke it on the Debian
autobuilders, which seem to have a tigher than usual ulimit.

The leak was introduced by the lazy getDirectoryContents' that was
introduced in e6330988dd in order to scale to
millions of journal files -- if the lazy list was never fully consumed, the
directory handle did not get closed.

Instead, pull in openDirectory/readDirectory/closeDirectory code that I
already developed and submitted in a patch to the haskell directory library
earlier. Using this in journalDirty avoids the place that the lazy list
caused a problem. And using it in stageJournal eliminates the need for
getDirectoryContents'.

The getJournalFiles* functions are switched back to using the regular
strict getDirectoryContents. I'm not sure if those always consume the whole
list, so this avoids any leak. And the things that call those are things
like git annex unused, which also look at every file committed to the
git-annex branch, so would need more work to scale to insane numbers of
files anyway.
2014-07-09 23:36:53 -04:00
Joey Hess
e6330988dd
Fix memory leak when committing millions of changes to the git-annex branch
Eg after git-annex add has run on 2 million files in one go.

Slightly unhappy with the neeed to use a temp file here, but I cannot see
any other alternative (see comments on the bug report).

This commit was sponsored by Hamish Coleman.
2014-07-04 15:28:07 -04:00
Joey Hess
d41849bc23
support commit.gpgsign
Support users who have set commit.gpgsign, by disabling gpg signatures for
git-annex branch commits and commits made by the assistant.

The thinking here is that a user sets commit.gpgsign intending the commits
that they manually initiate to be gpg signed. But not commits made in the
background, whether by a deamon or implicitly to the git-annex branch.
gpg signing those would be at best a waste of CPU and at worst would fail,
or flood the user with gpg passphrase prompts, or put their signature on
changes they did not directly do.

See Debian bug #753720.

Also makes all commits done by git-annex go through a few central control
points, to make such changes easier in future.

Also disables commit.gpgsign in the test suite.

This commit was sponsored by Antoine Boegli.
2014-07-04 11:53:51 -04:00
Joey Hess
2dd274e4ca webapp: When adding a new local repository, fix bug that caused its group and preferred content to be set in the current repository, even when not combining.
There was a tricky bit here, when it does combine, the edit form is shown,
and so the info needs to be committed to the new repository, but then
pulled into the current one. And caches need to be invalidated for it
to be visible in the edit form.
2014-05-29 20:17:05 -04:00
Joey Hess
95ca3bb022 Fix encoding of data written to git-annex branch. Avoid truncating unicode characters to 8 bits.
Allow any encoding to be used, as with filenames (but utf8 is the sane
choice). Affects metadata and repository descriptions, and preferred
content expressions.

The question of what's the right encoding for the git-annex branch is a
vexing one. utf-8 would be a nice choice, but this leaves the possibility
of bad data getting into a git-annex branch somehow, and this resulting in
git-annex crashing with encoding errors, which is a failure mode I want to
avoid.

(Also, preferred content expressions can refer to filenames, and filenames
can have any encoding, so limiting to utf-8 would not be ideal.)

The union merge code already took care to not assume any encoding for a
file. Except it assumes that any \n is a literal newline, and not part of
some encoding of a character that happens to contain a newline. (At least
utf-8 avoids using newline for anything except liternal newlines.)
Adapted the git-annex branch code to use this same approach.

Note that there is a potential interop problem with Windows, since
FileSystemEncoding doesn't work there, and instead things are always
decoded as utf-8. If someone uses non-utf8 encoding for data on the
git-annex branch, this can lead to an encoding error on windows. However,
this commit doesn't actually make that any worse, because the union merge
code would similarly fail with an encoding error on windows in that
situation.

This commit was sponsored by Kyle Meyer.
2014-05-27 14:16:33 -04:00
Joey Hess
4e0be2792b remove Read instance for Ref
Removed instance, got it all to build using fromRef. (With a few things
that really need to show something using a ref for debugging stubbed out.)

Then added back Read instance, and made Logs.View use it for serialization.
This changes the view log format.
2014-02-19 01:19:57 -04:00
Joey Hess
67fd06af76 add git annex view command
(And a vpop command, which is still a bit buggy.)

Still need to do vadd and vrm, though this also adds their documentation.

Currently not very happy with the view log data serialization. I had to
lose the TDFA regexps temporarily, so I can have Read/Show instances of
View. I expect the view log format will change in some incompatable way
later, probably adding last known refs for the parent branch to View
or something like that.

Anyway, it basically works, although it's a bit slow looking up the
metadata. The actual git branch construction is about as fast as it can be
using the current git plumbing.

This commit was sponsored by Peter Hogg.
2014-02-18 18:22:20 -04:00
Joey Hess
a44e01c29c --in can now refer to files that were located in a repository at some past date. For example, --in="here@{yesterday}" 2014-02-06 12:43:56 -04:00
Joey Hess
2ecd42b43b remove debug print
just saw it legitimately occur when 2 git-annex were running
2014-01-26 17:04:12 -04:00
Joey Hess
207ac67aaa avoid needing a build-dep on hxt for Data.AssocList 2014-01-14 16:42:10 -04:00
Joey Hess
d07f2d7865 Fix a long-standing bug that could cause the wrong index file to be used when committing to the git-annex branch, if GIT_INDEX_FILE is set in the environment. This typically resulted in git-annex branch log files being committed to the master branch and later showing up in the work tree. (These log files can be safely removed.) 2014-01-14 15:36:33 -04:00
Joey Hess
03932212ec Avoid using git commit in direct mode, since in some situations it will read the full contents of files in the tree.
The assistant's commit code also always avoids git commit, for simplicity.
Indirect mode sync still does a git commit -a to catch unstaged changes.

Note that this means that direct mode sync no longer runs the pre-commit
hook or any other hooks git commit might call. The git annex pre-commit
hook action for direct mode is however explicitly run. (The assistant
already ran git commit with hooks disabled, so no change there.)
2013-12-01 13:59:45 -04:00
Joey Hess
b876df6fdb Ensure that core.sharedrepository is honored when creating the .git/annex directory. 2013-11-18 18:20:20 -04:00
Joey Hess
310c549b5a Ensure execute bit is set on directories when core.sharedrepsitory is set. 2013-11-18 18:13:09 -04:00
Joey Hess
81117e8a9d typo 2013-11-06 12:39:14 -04:00
Joey Hess
ee23be55fd Fix exception handling bug that could cause .git/annex/index to be used for git commits outside the git-annex branch. Known to affect git-annex when used with the git shipped with Ubuntu 13.10. 2013-11-06 12:21:50 -04:00
Joey Hess
435ea52f3c repair command: add handling of git-annex branch and index 2013-10-23 13:00:45 -04:00
Joey Hess
f8880c4fe4 Automatically and safely detect and recover from dangling .git/annex/index.lock files, which would prevent git from committing to the git-annex branch, eg after a crash. 2013-10-03 15:43:08 -04:00
Joey Hess
83b4b8d589 rename confusing function
The index.lck file is not a lock file. Kept the historical name for now as
changing it would be work.
2013-10-03 15:06:58 -04:00
Joey Hess
f2ee4ef86d ensure that commitBranch is only called when the journal is locked
This is not strictly a requirement, since it does not actually update the
journal. But it's a nice invariant to enforce.
2013-10-03 14:48:46 -04:00
Joey Hess
56c3f68a53 use types to partially prove correctness of journal locking code
My implementation does not guard against double locking of the journal. But
it does ensure that the journal is always locked when operated on, by using
a type that is only produced by lockJournal, and which is required as a
parameter of all functions that operate on the journal.

Note that I had to add the fooStale functions for cases where it does not
make sense to lock the journal when querying it. I was more concerned about
ensuring that anything that modifies the journal is locked.
setJournalFile's implementation ensures that any query of the journal will
get one value or the other atomically, even if the journal is being changed
at the time.
2013-10-03 14:41:57 -04:00
Joey Hess
7a9a16b337 lockJournal when running performTransitions
This may not strictly be needed -- the transition code bypasses the
journal. However, this ensures that the git-annex branch is only
committed with the journal locked. This will allow for further
improvements.
2013-10-03 14:37:46 -04:00
Joey Hess
4079f9cfe8 avoid double commit during transition
The second commit had some bad refs which resulted in the race detection
code running. But that commit was unnecessary anyway, it only was there to
merge in the other refs.
2013-09-03 16:33:15 -04:00