connRepo is only used when relaying git upload-pack and receive-pack.
That's only supposed to be used when git-annex-remotedaemon is serving
git-remote-tor-annex connections over tor. But, it was always set, and
so could be used in other places possibly.
Fixed by making connRepo optional in the P2P protocol interface.
In Command.EnableTor, it's not needed, because it only speaks the
protocol in order to check that it's able to connect back to itself via
the hidden service. So changed that to pass Nothing rather than the git
repo.
In Remote.Helper.Ssh, it's connecting to git-annex-shell p2pstdio,
so is making the requests, so will never need connRepo.
In git-annex-shell p2pstdio, it was accepting git upload-pack and
receive-pack requests over the P2P protocol, even though nothing sent
them. This is arguably a security hole, particularly if the user has
set environment variables like GIT_ANNEX_SHELL_LIMITED to prevent
git push/pull via git-annex-shell.
They could be missing due to an interrupted git-annex at just the wrong
time during a prior graft, after which the tree objects got garbage
collected.
Or they could be missing because of manual messing with the git-annex
branch, eg resetting it to back before the graft commit.
Sponsored-by: Dartmouth College's OpenNeuro project
Fix a bug where interrupting git-annex while it is updating the git-annex
branch could lead to git fsck complaining about missing tree objects.
Interrupting git-annex while regraftexports is running in a transition
that is forgetting git-annex branch history would leave the
repository with a git-annex branch that did not contain the tree shas
listed in export.log. That lets those trees be garbage collected.
A subsequent run of the same transition then regrafts the trees listed
in export.log into the git-annex branch. But those trees have been lost.
Note that both sides of `if neednewlocalbranch` are atomic now. I had
thought only the True side needed to be, but I do think there may be
cases where the False side needs to be as well.
Sponsored-by: Dartmouth College's OpenNeuro project
It was possible for the export.log to get written and then git-annex was
interrupted, before it could graft in the exported tree. Which could
result in export.log referencing a tree that got garbage collected.
