Commit graph

204 commits

Author SHA1 Message Date
Joey Hess
ec198fec83
fsck: When the only copy of a file is in a dead repository, mention the repository. 2016-02-19 15:12:11 -04:00
Joey Hess
885e54df0a
fsck: Populate unlocked files in v6 repositories whose content is present in annex/objects but didn't reach the work tree.
This also handles fixing up after cf260d9a15
2016-02-14 17:27:50 -04:00
Joey Hess
675321264f
fsck: Detect and fix missing associated file mappings in v6 repositories.
This also handles fixing up after the bad data written by
cf260d9a15.
2016-02-14 17:09:54 -04:00
Joey Hess
74bbdfa888
files with only 1 linkCount may still be unlocked
When on crippled filesystem, or without annex.thin set.
2016-02-14 17:04:09 -04:00
Joey Hess
5b51db7645
clean up 2016-02-14 16:52:43 -04:00
Joey Hess
737e45156e
remove 163 lines of code without changing anything except imports 2016-01-20 16:36:33 -04:00
Joey Hess
87f0708f88
persistent-sqlite is now a hard build dependency, since v6 repository mode needs it. 2015-12-26 13:00:52 -04:00
Joey Hess
99f1d7991d
recent fsck changes caused ugly message when object was not present 2015-12-15 16:10:48 -04:00
Joey Hess
0ddcaae9c1
changes for v6 broke fsck in direct mode 2015-12-15 14:27:20 -04:00
Joey Hess
e7183d83d3
fsck for v6 unlocked files
This only adds 1 stat to each file fscked for locked files, so
added overhead is minimal.

For unlocked files it has to access the database to see if a file
is modified.
2015-12-11 16:07:54 -04:00
Joey Hess
abd66c7089
fsck: Failed to honor annex.diskreserve when checking a remote. 2015-12-11 13:50:27 -04:00
Joey Hess
4b02af57b6
display a message in the unlikely scenario of fsking a dead repository 2015-11-10 14:44:58 -04:00
Joey Hess
cd7929034a
fsck: When fscking a dead repo, avoid incorrect "fixing location log" message.
keyLocations doesn't return locations in dead repos, but if we're fscking a
dead repo, we want to look at what locations are actually logged for it.
2015-11-10 13:59:04 -04:00
Joey Hess
3d0f41518d
parallel fsck (yes, these changes are all it takes now!) 2015-11-04 16:28:14 -04:00
Joey Hess
2def1d0a23 other 80% of avoding verification when hard linking to objects in shared repo
In c6632ee5c8, it actually only handled
uploading objects to a shared repository. To avoid verification when
downloading objects from a shared repository, was a lot harder.

On the plus side, if the process of downloading a file from a remote
is able to verify its content on the side, the remote can indicate this
now, and avoid the extra post-download verification.

As of yet, I don't have any remotes (except Git) using this ability.
Some more work would be needed to support it in special remotes.

It would make sense for tahoe to implicitly verify things downloaded from it;
as long as you trust your tahoe server (which typically runs locally),
there's cryptographic integrity. OTOH, despite bup being based on shas,
a bup repo under an attacker's control could have the git ref used for an
object changed, and so a bup repo shouldn't implicitly verify. Indeed,
tahoe seems unique in being trustworthy enough to implicitly verify.
2015-10-02 14:35:12 -04:00
Joey Hess
cad3349001 rename fsckKey to verifyKeyContent
No behavior changes.
2015-10-01 13:29:17 -04:00
Joey Hess
3f47d1b351 Improve bash completion, so it completes names of remotes and backends in appropriate places.
Not necessarily everywhere, but a lot of the most often used places.

Re the use of .Internal, see
https://github.com/pcapriotti/optparse-applicative/issues/155
2015-09-14 13:19:04 -04:00
Joey Hess
0b7a8b72bb Fix building without database.
Ben Boeckel had a patch, but..
Actually, that was not the only place that used ScheduleIncremental when
built w/o database. Since the data type doesn't need database stuff,
I've instead fixed this build problem by exposing the
ScheduleIncremental constructor to database-less builds.
2015-08-23 15:39:29 -07:00
Joey Hess
9dfe03dbcd Improve shutdown due to --time-limit, especially for fsck
* Perform a clean shutdown when --time-limit is reached.
  This includes running queued git commands, and cleanup actions normally
  run when a command is finished.
* fsck: Commit incremental fsck database when --time-limit is reached.
  Previously, some of the last files fscked did not make it into the
  database when using --time-limit.

Note that this changes Annex.addCleanup hooks, to run after --time-limit
expires. Fsck was using such a hook to clean up after a
--incremental-schedule, and that shouldn't run when --time-limit exipires
it. So, instead, moved that cleanup code to be run by cleanupIncremental.
Resulted in some data type juggling.
2015-07-31 16:01:54 -04:00
Joey Hess
1fb9ab342b Support building without persistent database on for systems that lack TH. This removes support for incremental fsck. 2015-07-25 17:37:09 -04:00
Joey Hess
6a4f2087be finished converting all the main options 2015-07-10 13:23:06 -04:00
Joey Hess
a7f58634b8 wip 2015-07-09 16:05:45 -04:00
Joey Hess
8ad927dbc6 converted copy and move
Got a little tricky..
2015-07-09 15:23:14 -04:00
Joey Hess
032e6485fa use Alternative for parsing KeyOptions 2015-07-09 12:44:03 -04:00
Joey Hess
94e703e8b8 use Alternative when parsing mutually exclusive fsck options 2015-07-09 12:26:25 -04:00
Joey Hess
c1c64ec76c formatting 2015-07-09 10:42:28 -04:00
Joey Hess
d8d1499229 finalOpt is the same as optional 2015-07-09 01:02:27 -04:00
Joey Hess
60806dd191 wip 2015-07-08 17:59:06 -04:00
Joey Hess
6a88c7c101 converted fsck's options to optparse-applicative
Global options and seeking and key options are still to be done.
2015-07-08 16:58:54 -04:00
Joey Hess
6e5c1f8db3 convert all commands to work with optparse-applicative
Still no options though.
2015-07-08 15:08:02 -04:00
Joey Hess
a2ba701056 started converting to use optparse-applicative
This is a work in progress. It compiles and is able to do basic command
dispatch, including git autocorrection, while using optparse-applicative
for the core commandline parsing.

* Many commands are temporarily disabled before conversion.
* Options are not wired in yet.
* cmdnorepo actions don't work yet.

Also, removed the [Command] list, which was only used in one place.
2015-07-08 13:36:25 -04:00
Joey Hess
5123a512d6 add a hint about marking a key dead 2015-06-09 15:12:40 -04:00
Joey Hess
6eefc5db65 fsck: Ignore keys that are known to be dead when running in --all mode or a in a bare repo. Otherwise, still reports files with lost contents, even if the content is dead. 2015-06-09 14:08:57 -04:00
Joey Hess
a812d598ef Take space that will be used by running downloads into account when checking annex.diskreserve. 2015-05-12 15:20:22 -04:00
Joey Hess
e27b97d364 Merge branch 'master' into concurrentprogress
Conflicts:
	Command/Fsck.hs
	Messages.hs
	Remote/Directory.hs
	Remote/Git.hs
	Remote/Helper/Special.hs
	Types/Remote.hs
	debian/changelog
	git-annex.cabal
2015-05-12 13:23:22 -04:00
Joey Hess
6cf62a9bde support time-1.5.0
This no longer uses old-locale's defaultTimeLocale, but provides one
of its own.

Factored out a Logs.TimeStamp.
2015-05-10 15:21:35 -04:00
Joey Hess
469242ac4d fsck: Ignore error recording the fsck in the activity log, which can happen when running fsck in a read-only repository. Closes: #698559 (fsck can still need to write to the repository if it find problems, but a successful fsck can be done read-only) 2015-05-06 14:45:20 -04:00
Joey Hess
38c458b407 refactor 2015-04-30 14:02:56 -04:00
Joey Hess
cfbeb1e7b7 Fix bogus failure of fsck --fast. 2015-04-27 17:40:21 -04:00
Joey Hess
8d685768d3 fsck --from remote: Avoid downloading a key if it would go over the annex.diskreserve limit. 2015-04-18 14:23:42 -04:00
Joey Hess
8489057e8d fsck --from remote: When bad content is found in the remote, and the local repo does not have a copy of the content, preserve the bad content in .git/annex/bad/ to avoid further data loss. 2015-04-18 14:13:07 -04:00
Joey Hess
a2902cdaaf add filename to progress bar, and display ok/failed at end
This needed plumbing an AssociatedFile through retrieveKeyFileCheap.
2015-04-14 16:35:10 -04:00
Joey Hess
9445556c97 rethought distributed fsck; instead add activity.log and expire command
This is much more space efficient!
2015-04-05 12:50:02 -04:00
Joey Hess
656fc1c881 fsck: Added --distributed and --expire options, for distributed fsck. 2015-04-01 17:53:16 -04:00
Joey Hess
cd6b62f35e --auto is no longer a global option; only get, drop, and copy accept it.
Not a behavior change unless you were passing it to a command that ignored it.
2015-03-25 17:06:14 -04:00
Joey Hess
3414229354 fsck: Multiple incremental fscks of different repos (some remote) can now be in progress at the same time in the same repo without it getting confused about which files have been checked for which remotes. 2015-02-17 17:08:11 -04:00
Joey Hess
afb3e3e472 avoid crash when starting fsck --incremental when one is already running
Turns out sqlite does not like having its database deleted out from
underneath it. It might suffice to empty the table, but I would rather
start each fsck over with a new database, so I added a lock file, and
running incremental fscks use a shared lock.

This leaves one concurrency bug left; running two concurrent fsck --more
will lead to: "SQLite3 returned ErrorBusy while attempting to perform step."
and one or both will fail. This is a concurrent writers problem.
2015-02-17 13:30:24 -04:00
Joey Hess
7d36e7d18d commit new transaction after 60 seconds
Database.Handle can now be given a CommitPolicy, making it easy to specify
transaction granularity.

Benchmarking the old git-annex incremental fsck that flips sticky bits
to the new that uses sqlite, running in a repo with 37000 annexed files,
both from cold cache:

old: 6m6.906s
new: 6m26.913s

This commit was sponsored by TasLUG.
2015-02-16 17:05:42 -04:00
Joey Hess
d2766df914 commit more transactions when fscking
This makes interrupt and resume work, robustly.

But, incremental fsck is slowed down by all those transactions..
2015-02-16 16:07:36 -04:00
Joey Hess
91e9146d1b convert incremental fsck to using sqlite database
Did not keep backwards compat for sticky bit records. An incremental fsck
that is already in progress will start over on upgrade to this version.

This is not yet ready for merging. The autobuilders need to have sqlite
installed.

Also, interrupting a fsck --incremental does not commit the database.
So, resuming with fsck --more restarts from beginning.

Memory: Constant during a fsck of tens of thousands of files.
(But, it does seem to buffer whole transation in memory, so
may really scale with number of files.)

CPU: ?
2015-02-16 15:35:26 -04:00