Fix Key directory hash calculation code to behave as it did before version
3.20120227 when a key contains non-ascii.
The hash directories for a given Key are based on its md5sum.
Prior to ghc 7.4, Keys contained raw, undecoded bytes, so the md5sum was
taken of each byte in turn. With the ghc 7.4 filename encoding change,
keys contains decoded unicode characters (possibly with surrigates for
undecodable bytes). This changes the result of the md5sum, since the md5sum
used is pure haskell and supports unicode. And that won't do, as git-annex
will start looking in a different hash directory for the content of a key.
The surrigates are particularly bad, since that's essentially a ghc
implementation detail, so could change again at any time. Also, changing
the locale changes how the bytes are decoded, which can also change
the md5sum.
Symptoms would include things like:
* git annex fsck would complain that no copies existed of a file,
despite its symlink pointing to the content that was locally present
* git annex fix would change the symlink to use the wrong hash
directory.
Only WORM backend is likely to have been affected, since only it tends
to include much filename data (SHA1E could in theory also be affected).
I have not tried to support the hash directories used by git-annex versions
3.20120227 to 3.20120308, so things added with those versions with WORM
will require manual fixups. Sorry for the inconvenience!
Locking is used, so that, if there are multiple git-annex processes
using a remote concurrently, the stop hook is only run by the last
process that uses it.
Now changes are staged into the branch's index, but not committed,
which avoids growing a large journal. And sync and merge always
explicitly commit, ensuring that even when they do nothing else,
they commit the staged changes.
Added a flag file to indicate that the branch's journal contains
uncommitted changes. (Could use git ls-files, but don't want to run
that every time.)
In the future, this ability to have uncommitted changes staged in the
journal might be used on remotes after a series of oneshot commands.
Ssh connection caching is now enabled automatically by git-annex. Only one
ssh connection is made to each host per git-annex run, which can speed some
things up a lot, as well as avoiding repeated password prompts. Concurrent
git-annex processes also share ssh connections. Cached ssh connections are
shut down when git-annex exits.
Note: The rsync special remote does not yet participate in the ssh
connection caching.
The last branch ref that the index was updated to is stored in
.git/annex/index.lck, and the index only updated when the current
branch ref differs.
(The .lck file should later be used for locking too.)
Some more optimization is still needed, since there is some redundancy in
calls to git show-ref.
Directory special remotes will now always store keys in the lowercase name,
which avoids the complication of catching failures to create the mixed case
name.
Git remotes using http will now try the lowercase name first.
When storing content in bare repositories, use the hashDirLower
directories. Bare repositories can be on USB drives, which might
use the FAT filesystem, and fall afoul of recent bugs in linux's handling
of mixed case on FAT. Using hashDirLower avoids that.
Supporting multiple directory hash types will allow converting to a
different one, without a flag day.
gitAnnexLocation now checks which of the possible locations have a file.
This means more statting of files. Several places currently use
gitAnnexLocation and immediately check if the returned file exists;
those need to be optimised.
Many functions took the repo as their first parameter. Changing it
consistently to be the last parameter allows doing some useful things with
currying, that reduce boilerplate.
In particular, g <- gitRepo is almost never needed now, instead
use inRepo to run an IO action in the repo, and fromRepo to get
a value from the repo.
This also provides more opportunities to use monadic and applicative
combinators.
git is slow when the index file is large and has to be rewritten each time
a file is changed. To speed this up, added a journal where changes are
recorded before being fed into the index file and committed to the
git-annex branch. The entire journal can be fed into git with just 2
commands, and only one write of the index file.
to avoid some issues with git on OSX with the mixed-case directories. No
migration is needed; the old mixed case hash directories are still read;
new information is written to the new directories.
This means there can be 1024 subdirs, each with up to 1024 sub-subdirs.
So with hundreds of millions of annexed objects, each leaf directory will
have only a few files on average.
It compiles. It sorta works. Several subcommands are FIXME marked and
broken, because things that used to accept separate --backend and --key
params need to be changed to accept just a --key that encodes all the key
info, now that there is metadata in keys.
This relies on git-annex's behavior of reading the config of local repos.
That allows repoIsLocalBare to examine the git config for core.bare.
Hopefully, gitAnnexLocation, gitAnnexDir, and gitAnnexObjectDir
are only used on local repos. But, I have not audited fully, since
they're probably not (see for example copyToRemote). And so,
the functions fall back to their old non-bare-aware behavior for
non-local repos.
* Improved temp file handling. Transfers of content can now be resumed
from temp files later; the resume does not have to be the immediate
next git-annex run.
* unused: Include partially transferred content in the list.
