Similar to what commit 675556fd9a did for
adding a non-annexed file, this prevents the smudge clean filter
recognising the inode if git add is later run on the unannexed file.
unannex, uninit: When an annexed file is modified, don't overwrite the
modified version with an older version from the annex
This commit was sponsored by Mark Reidenbach on Patreon.
No behavior changes (hopefully), just adding SeekInput and plumbing it
through to the JSON display code for later use.
Over the course of 2 grueling days.
withFilesNotInGit reimplemented in terms of seekHelper
should be the only possible behavior change. It seems to test as
behaving the same.
Note that seekHelper dummies up the SeekInput in the case where
segmentPaths' gives up on sorting the expanded paths because there are
too many input paths. When SeekInput later gets exposed as a json field,
that will result in it being a little bit wrong in the case where
100 or more paths are passed to a git-annex command. I think this is a
subtle enough problem to not matter. If it does turn out to be a
problem, fixing it would require splitting up the input
parameters into groups of < 100, which would make git ls-files run
perhaps more than is necessary. May want to revisit this, because that
fix seems fairly low-impact.
This removes all calls to inAnnex, except for some involving --batch.
It may be that the batch code could get a similar speedup, but I don't
know if people habitually pass a huge number of files through --batch
that git-annex does not need to do anything to process, so I skipped it
for now.
A few calls to ifAnnexed remain, and might be worth doing more to
convert. In particular, Command.Sync has one that would probably speed
it up by a good amount.
(also removed some dead code from Command.Lock)
Added annex.skipunknown git config, that can be set to false to change the
behavior of commands like `git annex get foo*`, to not skip over files/dirs
that are not checked into git and are explicitly listed in the command
line.
Significant complexity was needed to handle git-annex add, which uses some
git ls-files calls, but needs to not use --error-unmatch because of course
the files are not known to git.
annex.skipunknown is planned to change to default to false in a
git-annex release in early 2022. There's a todo for that.
git-annex find is now RawFilePath end to end, no string conversions.
So is git-annex get when it does not need to get anything.
So this is a major milestone on optimisation.
Benchmarks indicate around 30% speedup in both commands.
Probably many other performance improvements. All or nearly all places
where a file is statted use RawFilePath now.
Adds a dependency on filepath-bytestring, an as yet unreleased fork of
filepath that operates on RawFilePath.
Git.Repo also changed to use RawFilePath for the path to the repo.
This does eliminate some RawFilePath -> FilePath -> RawFilePath
conversions. And filepath-bytestring's </> is probably faster.
But I don't expect a major performance improvement from this.
This is mostly groundwork for making Annex.Location use RawFilePath,
which will allow for a conversion-free pipleline.
Finally builds (oh the agoncy of making it build), but still very
unmergable, only Command.Find is included and lots of stuff is badly
hacked to make it compile.
Benchmarking vs master, this git-annex find is significantly faster!
Specifically:
num files old new speedup
48500 4.77 3.73 28%
12500 1.36 1.02 66%
20 0.075 0.074 0% (so startup time is unchanged)
That's without really finishing the optimization. Things still to do:
* Eliminate all the fromRawFilePath, toRawFilePath, encodeBS,
decodeBS conversions.
* Use versions of IO actions like getFileStatus that take a RawFilePath.
* Eliminate some Data.ByteString.Lazy.toStrict, which is a slow copy.
* Use ByteString for parsing git config to speed up startup.
It's likely several of those will speed up git-annex find further.
And other commands will certianly benefit even more.
The goal is to be able to run CommandStart in the main thread when -J is
used, rather than unncessarily passing it off to a worker thread, which
incurs overhead that is signficant when the CommandStart is going to
quickly decide to stop.
To do that, the message it displays needs to be displayed in the worker
thread, after the CommandStart has run.
Also, the change will mean that CommandStart will no longer necessarily
run with the same Annex state as CommandPerform. While its docs already
said it should avoid modifying Annex state, I audited all the
CommandStart code as part of the conversion. (Note that CommandSeek
already sometimes runs with a different Annex state, and that has not been
a source of any problems, so I am not too worried that this change will
lead to breakage going forward.)
The only modification of Annex state I found was it calling
allowMessages in some Commands that default to noMessages. Dealt with
that by adding a startCustomOutput and a startingUsualMessages.
This lets a command start with noMessages and then select the output it
wants for each CommandStart.
One bit of breakage: onlyActionOn has been removed from commands that used it.
The plan is that, since a StartMessage contains an ActionItem,
when a Key can be extracted from that, the parallel job runner can
run onlyActionOn' automatically. Then commands won't need to worry about
this detail. Future work.
Otherwise, this was a fairly straightforward process of making each
CommandStart compile again. Hopefully other behavior changes were mostly
avoided.
In a few cases, a command had a CommandStart that called a CommandPerform
that then called showStart multiple times. I have collapsed those
down to a single start action. The main command to perhaps suffer from it
is Command.Direct, which used to show a start for each file, and no
longer does.
Another minor behavior change is that some commands used showStart
before, but had an associated file and a Key available, so were changed
to ShowStart with an ActionItemAssociatedFile. That will not change the
normal output or behavior, but --json output will now include the key.
This should not break it for anyone using a real json parser.
This does not change the overall license of the git-annex program, which
was already AGPL due to a number of sources files being AGPL already.
Legally speaking, I'm adding a new license under which these files are
now available; I already released their current contents under the GPL
license. Now they're dual licensed GPL and AGPL. However, I intend
for all my future changes to these files to only be released under the
AGPL license, and I won't be tracking the dual licensing status, so I'm
simply changing the license statement to say it's AGPL.
(In some cases, others wrote parts of the code of a file and released it
under the GPL; but in all cases I have contributed a significant portion
of the code in each file and it's that code that is getting the AGPL
license; the GPL license of other contributors allows combining with
AGPL code.)
This is groundwork for nested seek loops, eg seeking over all files and
then performing commandActions on a list of remotes, which can be done
concurrently.
This commit was sponsored by Boyd Stephen Smith Jr. on Patreon.
Added --json-error-messages option, which includes error messages in the
json output, rather than outputting them to stderr.
The actual rediretion of errors is not implemented yet, this is only
the docs and option plumbing.
This commit was supported by the NSF-funded DataLad project.
git annex add, git annex lock etc make multiple seek passes,
and each seek pass checked that files existed. That was unncessary
redundant work.
Fixed by adding a new WorkTreeItem type, make seek actions use it,
and check that the files exist when constructing it.
This commit was supported by the NSF-funded DataLad project.
ghc 8 added backtraces on uncaught errors. This is great, but git-annex was
using error in many places for a error message targeted at the user, in
some known problem case. A backtrace only confuses such a message, so omit it.
Notably, commands like git annex drop that failed due to eg, numcopies,
used to use error, so had a backtrace.
This commit was sponsored by Ethan Aubin.
Fixes several bugs with updates of pointer files. When eg, running
git annex drop --from localremote
it was updating the pointer file in the local repository, not the remote.
Also, fixes drop ../foo when run in a subdir, and probably lots of other
problems. Test suite drops from ~30 to 11 failures now.
TopFilePath is used to force thinking about what the filepath is relative
to.
The data stored in the sqlite db is still just a plain string, and
TopFilePath is a newtype, so there's no overhead involved in using it in
DataBase.Keys.
This is a work in progress. It compiles and is able to do basic command
dispatch, including git autocorrection, while using optparse-applicative
for the core commandline parsing.
* Many commands are temporarily disabled before conversion.
* Options are not wired in yet.
* cmdnorepo actions don't work yet.
Also, removed the [Command] list, which was only used in one place.
This removes a bit of complexity, and should make things faster
(avoids tokenizing Params string), and probably involve less garbage
collection.
In a few places, it was useful to use Params to avoid needing a list,
but that is easily avoided.
Problems noticed while doing this conversion:
* Some uses of Params "oneword" which was entirely unnecessary
overhead.
* A few places that built up a list of parameters with ++
and then used Params to split it!
Test suite passes.
This avoids cp -a overriding the default mode acls that the user might have
set in a git repository.
With GNU cp, this behavior change should not be a breaking change, because
git-anex also uses rsync sometimes in the same situation, and has only ever
preserved timestamps when using rsync.
Systems without GNU cp will no longer use cp -a, but instead just cp.
So, timestamps will no longer be preserved. Preserving timestamps when
copying between repos is not guaranteed anyway.
Closes: #729757
Support users who have set commit.gpgsign, by disabling gpg signatures for
git-annex branch commits and commits made by the assistant.
The thinking here is that a user sets commit.gpgsign intending the commits
that they manually initiate to be gpg signed. But not commits made in the
background, whether by a deamon or implicitly to the git-annex branch.
gpg signing those would be at best a waste of CPU and at worst would fail,
or flood the user with gpg passphrase prompts, or put their signature on
changes they did not directly do.
See Debian bug #753720.
Also makes all commits done by git-annex go through a few central control
points, to make such changes easier in future.
Also disables commit.gpgsign in the test suite.
This commit was sponsored by Antoine Boegli.
Only fsck and reinject and the test suite used the Backend, and they can
look it up as needed from the Key. This simplifies the code and also speeds
it up.
There is a small behavior change here. Before, all commands would warn when
acting on an annexed file with an unknown backend. Now, only fsck and
reinject show that warning.
To do so, I slightly changed the behavior of unannex. Now in fast mode, it
only makes a hard link when the annexed file's link count is 1. This avoids
unannexing 2 files with the same content in fast mode from hard linking
them together. (One will end up hard linked to the annex, which the docs
warn about.)
With that change, uninit can simply always run unannex in fast mode. Since
.git/annex/objects is being blown away anyway, there's no worry in this
case about a hard link pointing into it causing an annexed object to be
modified.
I've been disliking how the command seek actions were written for some
time, with their inversion of control and ugly workarounds.
The last straw to fix it was sync --content, which didn't fit the
Annex [CommandStart] interface well at all. I have not yet made it take
advantage of the changed interface though.
The crucial change, and probably why I didn't do it this way from the
beginning, is to make each CommandStart action be run with exceptions
caught, and if it fails, increment a failure counter in annex state.
So I finally remove the very first code I wrote for git-annex, which
was before I had exception handling in the Annex monad, and so ran outside
that monad, passing state explicitly as it ran each CommandStart action.
This was a real slog from 1 to 5 am.
Test suite passes.
Memory usage is lower than before, sometimes by a couple of megabytes, and
remains constant, even when running in a large repo, and even when
repeatedly failing and incrementing the error counter. So no accidental
laziness space leaks.
Wall clock speed is identical, even in large repos.
This commit was sponsored by an anonymous bitcoiner.
Copies files out of the annex. This avoids an unannex of one file breaking
other files that link to the same content. Also, it means that the content
remains in the annex using up space until cleaned up with "git annex
unused".
(The behavior of unannex --fast has not changed; it still hard
links to content in the annex. --fast was not made the default because it
is potentially unsafe; editing such a hard linked file can unexpectedly
change content stored in the annex.)
In direct mode, it's best to whenever possible not move direct mode files
out of the way, and so I made unannex avoid touching the direct mode file at
all.
That actually turns out to be easy, because in direct mode, unlike indirect
mode, the pre-commit hook won't get confused if the unannexed file later
gets added back by git add. So there's no need to commit the unannex right
away; it can be staged for the user to commit later. This also means that
unannex in direct mode is a lot faster than in indirect mode!
Another subtle bit is the bookkeeping that is done when unannexing a direct
mode file. The inode cache needs to be removed so that when uninit runs
getKeysPresent, it doesn't see the cache and think the key is still
present and crash when it's not.
This commit is sponsored by Douglas Butts. Thanks!
