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initial report on annex upgrade too curious about submodules

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yarikoptic 2022-12-12 23:03:33 +00:00 • committed by admin
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doc/todo/git_annex_upgrade_to_not_care_about_submod_status__63__.mdwn Normal file
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I ran `git annex upgrade` in some datalad super dataset (produced by heudiconv with reproin heuristic layout), and then (after it didn't return for ages) in the process tree saw that it goes to subdatasets (git submodules) to check on the status
```
```
bids 38757 0.0 0.0 1074049444 11552 pts/2 Sl+ 17:14 0:00 /usr/lib/git-annex.linux/exe/git-annex --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git-annex/git-annex upgrade
bids 38787 0.0 0.0 10316 1980 pts/2 S+ 17:14 0:00 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git --git-dir=.git --work-tree=. --literal-pathspecs cat-file --batch
bids 38790 0.0 0.0 11156 2204 pts/2 S+ 17:14 0:00 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git --git-dir=.git --work-tree=. --literal-pathspecs status --porcelain
bids 49130 0.0 0.0 11156 2192 pts/2 S+ 17:43 0:00 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git status --porcelain=2
bids 49139 0.0 0.0 11156 2192 pts/2 S+ 17:43 0:00 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git status --porcelain=2
bids 49162 0.8 0.0 1047612 11840 pts/2 Sl+ 17:44 0:07 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git status --porcelain=2
bids 15704 0.0 0.0 2404 376 pts/2 S+ 17:59 0:00 /bin/sh -c git-annex smudge --clean -- 'sub-sid001830/func/sub-sid001830_task-viewing_acq-638tr_run-06_bold.json' git-annex smudge --clean -- 'sub-sid001830/func/sub-sid001830_task-viewing_acq-638tr_run-06_bold.json'
bids 15705 2.0 0.0 1074123208 7608 pts/2 Rl+ 17:59 0:00 /usr/lib/git-annex.linux/exe/git-annex --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git-annex/git-annex smudge --clean -- sub-sid001830/func/sub-sid001830_task-viewing_acq-638tr_run-06_bold.json
bids 15711 1.0 0.0 13452 3632 pts/2 S+ 17:59 0:00 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git --git-dir=.git --work-tree=. --literal-pathspecs cat-file --batch-check=%(objectname) %(objecttype) %(objectsize)
```
I guess it could have used some flavor of `--ignore-submodules` with its invocation of `status` -- couldn't it?
[[!meta author=yoh]]
[[!tag projects/repronim]]