From e1133e9de89a775ed34f5932d9422ec6daeee089 Mon Sep 17 00:00:00 2001 From: yarikoptic Date: Mon, 12 Dec 2022 23:03:33 +0000 Subject: [PATCH] initial report on annex upgrade too curious about submodules --- ...to_not_care_about_submod_status__63__.mdwn | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 doc/todo/git_annex_upgrade_to_not_care_about_submod_status__63__.mdwn diff --git a/doc/todo/git_annex_upgrade_to_not_care_about_submod_status__63__.mdwn b/doc/todo/git_annex_upgrade_to_not_care_about_submod_status__63__.mdwn new file mode 100644 index 0000000000..0b79b26751 --- /dev/null +++ b/doc/todo/git_annex_upgrade_to_not_care_about_submod_status__63__.mdwn @@ -0,0 +1,21 @@ +I ran `git annex upgrade` in some datalad super dataset (produced by heudiconv with reproin heuristic layout), and then (after it didn't return for ages) in the process tree saw that it goes to subdatasets (git submodules) to check on the status + +``` +``` +bids 38757 0.0 0.0 1074049444 11552 pts/2 Sl+ 17:14 0:00 /usr/lib/git-annex.linux/exe/git-annex --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git-annex/git-annex upgrade +bids 38787 0.0 0.0 10316 1980 pts/2 S+ 17:14 0:00 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git --git-dir=.git --work-tree=. --literal-pathspecs cat-file --batch +bids 38790 0.0 0.0 11156 2204 pts/2 S+ 17:14 0:00 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git --git-dir=.git --work-tree=. --literal-pathspecs status --porcelain +bids 49130 0.0 0.0 11156 2192 pts/2 S+ 17:43 0:00 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git status --porcelain=2 +bids 49139 0.0 0.0 11156 2192 pts/2 S+ 17:43 0:00 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git status --porcelain=2 +bids 49162 0.8 0.0 1047612 11840 pts/2 Sl+ 17:44 0:07 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git status --porcelain=2 +bids 15704 0.0 0.0 2404 376 pts/2 S+ 17:59 0:00 /bin/sh -c git-annex smudge --clean -- 'sub-sid001830/func/sub-sid001830_task-viewing_acq-638tr_run-06_bold.json' git-annex smudge --clean -- 'sub-sid001830/func/sub-sid001830_task-viewing_acq-638tr_run-06_bold.json' +bids 15705 2.0 0.0 1074123208 7608 pts/2 Rl+ 17:59 0:00 /usr/lib/git-annex.linux/exe/git-annex --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git-annex/git-annex smudge --clean -- sub-sid001830/func/sub-sid001830_task-viewing_acq-638tr_run-06_bold.json +bids 15711 1.0 0.0 13452 3632 pts/2 S+ 17:59 0:00 /usr/lib/git-annex.linux/exe/git --library-path /usr/lib/git-annex.linux//lib/x86_64-linux-gnu: /usr/lib/git-annex.linux/shimmed/git/git --git-dir=.git --work-tree=. --literal-pathspecs cat-file --batch-check=%(objectname) %(objecttype) %(objectsize) + +``` + +I guess it could have used some flavor of `--ignore-submodules` with its invocation of `status` -- couldn't it? + +[[!meta author=yoh]] +[[!tag projects/repronim]] +