Added a comment: another instance of git-annex-sync not being idempotent
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Ilya_Shlyakhter
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[[!comment format=mdwn
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username="Ilya_Shlyakhter"
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avatar="http://cdn.libravatar.org/avatar/1647044369aa7747829c38b9dcc84df0"
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subject="another instance of git-annex-sync not being idempotent"
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date="2019-08-20T17:08:45Z"
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content="""
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Here it is again:
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[[!format sh \"\"\"
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# If you can, paste a complete transcript of the problem occurring here.
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# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log
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(master_env_v152_py36) 13:01 [viral-ngs-benchmarks] $ git annex sync
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On branch is-import-rabies200
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Your branch is up to date with 'origin/is-import-rabies200'.
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It took 6.38 seconds to enumerate untracked files. 'status -uno'
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may speed it up, but you have to be careful not to forget to add
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new files yourself (see 'git help status').
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nothing to commit, working tree clean
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commit ok
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remote: Enumerating objects: 2, done.
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remote: Counting objects: 100% (2/2), done.
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remote: Compressing objects: 100% (2/2), done.
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remote: Total 2 (delta 0), reused 1 (delta 0), pack-reused 0
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Unpacking objects: 100% (2/2), done.
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From github.com:broadinstitute/viral-ngs-benchmarks
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456ce673f18..c365f519845 is-import-rabies200 -> origin/is-import-rabies200
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456ce673f18..c365f519845 synced/is-import-rabies200 -> origin/synced/is-import-rabies200
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Updating 456ce673f18..c365f519845
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Fast-forward
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viral-ngs | 2 +-
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1 file changed, 1 insertion(+), 1 deletion(-)
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Already up to date.
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pull origin ok
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(master_env_v152_py36) 13:01 [viral-ngs-benchmarks] $ git annex sync
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[is-import-rabies200 fe351a22089] git-annex in viral-ngs-benchmarks copy at /data/ilya-work/benchmarks/viral-ngs-benchmarks
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1 file changed, 1 insertion(+), 1 deletion(-)
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commit ok
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pull origin ok
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Enumerating objects: 3, done.
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Counting objects: 100% (3/3), done.
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Delta compression using up to 8 threads
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Compressing objects: 100% (2/2), done.
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Writing objects: 100% (2/2), 959 bytes | 959.00 KiB/s, done.
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Total 2 (delta 1), reused 0 (delta 0)
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remote: Resolving deltas: 100% (1/1), completed with 1 local object.
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To github.com:broadinstitute/viral-ngs-benchmarks.git
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c365f519845..fe351a22089 is-import-rabies200 -> synced/is-import-rabies200
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push origin ok
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(master_env_v152_py36) 13:02 [viral-ngs-benchmarks] $ git annex sync
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On branch is-import-rabies200
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Your branch is up to date with 'origin/is-import-rabies200'.
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It took 6.40 seconds to enumerate untracked files. 'status -uno'
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may speed it up, but you have to be careful not to forget to add
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new files yourself (see 'git help status').
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nothing to commit, working tree clean
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commit ok
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pull origin ok
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(master_env_v152_py36) 13:04 [viral-ngs-benchmarks] $ uname -a
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Linux ip-172-31-93-72.ec2.internal 4.14.133-113.112.amzn2.x86_64 #1 SMP Tue Jul 30 18:29:50 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
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(master_env_v152_py36) 13:05 [viral-ngs-benchmarks] $ git annex version
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git-annex version: 7.20190819-ge4cecf8
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build flags: Assistant Webapp Pairing S3 WebDAV Inotify DBus DesktopNotify TorrentParser MagicMime Feeds Testsuite
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dependency versions: aws-0.21.1 bloomfilter-2.0.1.0 cryptonite-0.25 DAV-1.3.3 feed-1.0.1.0 ghc-8.6.5 http-client-0.5.14 persistent-sql\
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ite-2.9.3 torrent-10000.1.1 uuid-1.3.13 yesod-1.6.0
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key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_2\
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24 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 BLAKE2B256E BLAKE2B256 BLAKE2B512E BLAKE2B512 BLAKE2B160E BLAKE2B160 BLAKE\
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2B224E BLAKE2B224 BLAKE2B384E BLAKE2B384 BLAKE2BP512E BLAKE2BP512 BLAKE2S256E BLAKE2S256 BLAKE2S160E BLAKE2S160 BLAKE2S224E BLAKE2S224\
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BLAKE2SP256E BLAKE2SP256 BLAKE2SP224E BLAKE2SP224 SHA1E SHA1 MD5E MD5 WORM URL
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remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav adb tahoe glacier ddar git-lfs hook external
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operating system: linux x86_64
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supported repository versions: 5 7
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upgrade supported from repository versions: 0 1 2 3 4 5 6
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local repository version: 5
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(master_env_v152_py36) 13:05 [viral-ngs-benchmarks] $ git remote -vv
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dnanexus
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from-ilya-work
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from-ilya-work-01
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from-ilya-work-02
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from-ilya-work-03
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ilya-work /data/ilya-work (fetch)
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ilya-work /data/ilya-work (push)
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my-ldir
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mygs
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origin git@github.com:broadinstitute/viral-ngs-benchmarks.git (fetch)
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origin git@github.com:broadinstitute/viral-ngs-benchmarks.git (push)
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s3-viral-ngs-benchmarks-web
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viral-ngs-benchmarks-s3
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(master_env_v152_py36) 13:06 [viral-ngs-benchmarks] $ git annex info --fast
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repository mode: indirect
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trusted repositories: 0
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semitrusted repositories: 11
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00000000-0000-0000-0000-000000000001 -- web
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00000000-0000-0000-0000-000000000002 -- bittorrent
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0928dfcc-4dbe-4c24-a5a0-ac05c4a2c829 -- ilya-work
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0f104e0a-7126-4a4a-a342-e1bb049643f0 -- [from-ilya-work-03]
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1a276c39-67e3-4098-b469-747ab29fb97e -- viral-ngs-benchmarks copy on /ilya
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380286ac-2e8f-4285-94da-406eca323411 -- [dnanexus]
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40d047cf-3548-42d4-bdb6-e1e89a83b6df -- viral-ngs-benchmarks in broad laptop vm clone
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449efa47-a0e1-4376-a17f-42c7a1f509d1 -- Benchmarks for viral-ngs, stored on Amazon S3 [viral-ngs-benchmarks-s3]
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6b9993bb-df07-4409-be5e-05c1cd528165 -- [mygs]
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7205b5c0-4475-47c1-bfc1-39f57a487ac4 -- Website displaying benchmark summaries, stored on AWS S3 [s3-viral-ngs-benchmarks-web]
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b11d667d-2f3a-432a-a167-d90a1b0559cf -- viral-ngs-benchmarks copy at /data/ilya-work/benchmarks/viral-ngs-benchmarks [here]
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untrusted repositories: 1
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b9f389c1-2a37-4200-96d9-0f07d97b5417 -- [my-ldir]
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transfers in progress: none
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available local disk space: 427.31 gigabytes (+10 gigabytes reserved)
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# End of transcript or log.
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\"\"\"]]
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"""]]
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