diff --git a/doc/bugs/git-annex-sync_not_quite_idempotent__63__/comment_3_2381583c924561cbe46186fbd8fbf654._comment b/doc/bugs/git-annex-sync_not_quite_idempotent__63__/comment_3_2381583c924561cbe46186fbd8fbf654._comment new file mode 100644 index 0000000000..35e0feef63 --- /dev/null +++ b/doc/bugs/git-annex-sync_not_quite_idempotent__63__/comment_3_2381583c924561cbe46186fbd8fbf654._comment @@ -0,0 +1,120 @@ +[[!comment format=mdwn + username="Ilya_Shlyakhter" + avatar="http://cdn.libravatar.org/avatar/1647044369aa7747829c38b9dcc84df0" + subject="another instance of git-annex-sync not being idempotent" + date="2019-08-20T17:08:45Z" + content=""" +Here it is again: + +[[!format sh \"\"\" +# If you can, paste a complete transcript of the problem occurring here. +# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log + +(master_env_v152_py36) 13:01 [viral-ngs-benchmarks] $ git annex sync +On branch is-import-rabies200 +Your branch is up to date with 'origin/is-import-rabies200'. + + +It took 6.38 seconds to enumerate untracked files. 'status -uno' +may speed it up, but you have to be careful not to forget to add +new files yourself (see 'git help status'). +nothing to commit, working tree clean +commit ok +remote: Enumerating objects: 2, done. +remote: Counting objects: 100% (2/2), done. +remote: Compressing objects: 100% (2/2), done. +remote: Total 2 (delta 0), reused 1 (delta 0), pack-reused 0 +Unpacking objects: 100% (2/2), done. +From github.com:broadinstitute/viral-ngs-benchmarks + 456ce673f18..c365f519845 is-import-rabies200 -> origin/is-import-rabies200 + 456ce673f18..c365f519845 synced/is-import-rabies200 -> origin/synced/is-import-rabies200 +Updating 456ce673f18..c365f519845 +Fast-forward + viral-ngs | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) +Already up to date. +pull origin ok +(master_env_v152_py36) 13:01 [viral-ngs-benchmarks] $ git annex sync +[is-import-rabies200 fe351a22089] git-annex in viral-ngs-benchmarks copy at /data/ilya-work/benchmarks/viral-ngs-benchmarks + 1 file changed, 1 insertion(+), 1 deletion(-) +commit ok +pull origin ok +Enumerating objects: 3, done. +Counting objects: 100% (3/3), done. +Delta compression using up to 8 threads +Compressing objects: 100% (2/2), done. +Writing objects: 100% (2/2), 959 bytes | 959.00 KiB/s, done. +Total 2 (delta 1), reused 0 (delta 0) +remote: Resolving deltas: 100% (1/1), completed with 1 local object. +To github.com:broadinstitute/viral-ngs-benchmarks.git + c365f519845..fe351a22089 is-import-rabies200 -> synced/is-import-rabies200 +push origin ok +(master_env_v152_py36) 13:02 [viral-ngs-benchmarks] $ git annex sync +On branch is-import-rabies200 +Your branch is up to date with 'origin/is-import-rabies200'. + + +It took 6.40 seconds to enumerate untracked files. 'status -uno' +may speed it up, but you have to be careful not to forget to add +new files yourself (see 'git help status'). +nothing to commit, working tree clean +commit ok +pull origin ok +(master_env_v152_py36) 13:04 [viral-ngs-benchmarks] $ uname -a +Linux ip-172-31-93-72.ec2.internal 4.14.133-113.112.amzn2.x86_64 #1 SMP Tue Jul 30 18:29:50 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux +(master_env_v152_py36) 13:05 [viral-ngs-benchmarks] $ git annex version +git-annex version: 7.20190819-ge4cecf8 +build flags: Assistant Webapp Pairing S3 WebDAV Inotify DBus DesktopNotify TorrentParser MagicMime Feeds Testsuite +dependency versions: aws-0.21.1 bloomfilter-2.0.1.0 cryptonite-0.25 DAV-1.3.3 feed-1.0.1.0 ghc-8.6.5 http-client-0.5.14 persistent-sql\ +ite-2.9.3 torrent-10000.1.1 uuid-1.3.13 yesod-1.6.0 +key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_2\ +24 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 BLAKE2B256E BLAKE2B256 BLAKE2B512E BLAKE2B512 BLAKE2B160E BLAKE2B160 BLAKE\ +2B224E BLAKE2B224 BLAKE2B384E BLAKE2B384 BLAKE2BP512E BLAKE2BP512 BLAKE2S256E BLAKE2S256 BLAKE2S160E BLAKE2S160 BLAKE2S224E BLAKE2S224\ + BLAKE2SP256E BLAKE2SP256 BLAKE2SP224E BLAKE2SP224 SHA1E SHA1 MD5E MD5 WORM URL +remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav adb tahoe glacier ddar git-lfs hook external +operating system: linux x86_64 +supported repository versions: 5 7 +upgrade supported from repository versions: 0 1 2 3 4 5 6 +local repository version: 5 + +(master_env_v152_py36) 13:05 [viral-ngs-benchmarks] $ git remote -vv +dnanexus +from-ilya-work +from-ilya-work-01 +from-ilya-work-02 +from-ilya-work-03 +ilya-work /data/ilya-work (fetch) +ilya-work /data/ilya-work (push) +my-ldir +mygs +origin git@github.com:broadinstitute/viral-ngs-benchmarks.git (fetch) +origin git@github.com:broadinstitute/viral-ngs-benchmarks.git (push) +s3-viral-ngs-benchmarks-web +viral-ngs-benchmarks-s3 + +(master_env_v152_py36) 13:06 [viral-ngs-benchmarks] $ git annex info --fast +repository mode: indirect +trusted repositories: 0 +semitrusted repositories: 11 + 00000000-0000-0000-0000-000000000001 -- web + 00000000-0000-0000-0000-000000000002 -- bittorrent + 0928dfcc-4dbe-4c24-a5a0-ac05c4a2c829 -- ilya-work + 0f104e0a-7126-4a4a-a342-e1bb049643f0 -- [from-ilya-work-03] + 1a276c39-67e3-4098-b469-747ab29fb97e -- viral-ngs-benchmarks copy on /ilya + 380286ac-2e8f-4285-94da-406eca323411 -- [dnanexus] + 40d047cf-3548-42d4-bdb6-e1e89a83b6df -- viral-ngs-benchmarks in broad laptop vm clone + 449efa47-a0e1-4376-a17f-42c7a1f509d1 -- Benchmarks for viral-ngs, stored on Amazon S3 [viral-ngs-benchmarks-s3] + 6b9993bb-df07-4409-be5e-05c1cd528165 -- [mygs] + 7205b5c0-4475-47c1-bfc1-39f57a487ac4 -- Website displaying benchmark summaries, stored on AWS S3 [s3-viral-ngs-benchmarks-web] + b11d667d-2f3a-432a-a167-d90a1b0559cf -- viral-ngs-benchmarks copy at /data/ilya-work/benchmarks/viral-ngs-benchmarks [here] +untrusted repositories: 1 + b9f389c1-2a37-4200-96d9-0f07d97b5417 -- [my-ldir] +transfers in progress: none +available local disk space: 427.31 gigabytes (+10 gigabytes reserved) + + +# End of transcript or log. +\"\"\"]] + + +"""]]