Merge branch 'master' of ssh://git-annex.branchable.com
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### Please describe the problem.
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If a special remote has URIs that do not end in a file extension, then symlinks to annexed files fetched from that remote will have null extensions, even if
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CHECKURL returned a filename with an extension.
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git annex --verbose --debug addurl dx://file-BXF0vYQ0QyBF509G9J12g927
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creates the symlink
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contaminants.fasta -> ../.git/annex/objects/ZF/Gj/SHA256E-s18932--c1ed24754e8b7736e275359a34b312d2d6ce2efc1d236061b04d27a9e8147c1a/SHA256E-s18932--c1ed24754e8b7736e275359a34b312d2d6ce2efc1d236061b04d27a9e8147c1a
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which doesn't have an extension even though
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[2018-09-18 23:49:54.875801] git-annex-remote-dnanexus[1] --> CHECKURL-CONTENTS 18932 contaminants.fasta
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addurl dx://file-BXF0vYQ0QyBF509G9J12g927 (from dnanexus) (to contaminants.fasta) [2018-09-18 23:49:54.876016] read: git ["--version"]
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[2018-09-18 23:49:54.876825] process done ExitSuccess
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and the SHA256E backend is used.
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@ -0,0 +1,90 @@
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### Please describe the problem.
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I am trying to install git-annex on the Fairphone with Android/Termux.
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### What steps will reproduce the problem?
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Running
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$ source git-annex-install
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### What version of git-annex are you using? On what operating system?
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Fairphone Open Android 6.0, Marshmallow
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$ uname -a
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Linux localhost 3.4.0-gcde0e65 #1 SMP PREEMPT Wed Apr 11 16:49:55 BST 2018 armv7l Android
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### Please provide any additional information below.
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[[!format sh """
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# If you can, paste a complete transcript of the problem occurring here.
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# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log
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$ source git-annex-install
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unknown architecture armv7l, cannot install
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Connection to [host] closed.
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# End of transcript or log.
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"""]]
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after changing the line
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arm)
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to
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arm|armv7l)
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I get:
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[[!format sh """
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$ sh git-annex-install > out 2> out.err
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$ cat out
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Installing dependencies with termux pkg manager...
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Hit:1 https://termux.net stable InRelease
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Reading package lists...
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Building dependency tree...
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Reading state information...
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All packages are up to date.
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Reading package lists...
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Building dependency tree...
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Reading state information...
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coreutils is already the newest version (8.30-1).
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git is already the newest version (2.19.1).
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proot is already the newest version (5.1.107-18).
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tar is already the newest version (1.30-1).
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wget is already the newest version (1.19.5-1).
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0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Downloading git-annex...
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$ tail -n 15 out.err
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59450K .......... .......... .......... .......... .......... 99% 734K 0s
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59500K .......... .......... .......... .......... .......... 99% 846K 0s
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59550K .......... .......... .......... .......... ... 100% 759K=95s
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2018-10-31 16:42:08 (630 KB/s) - written to stdout [61023751/61023751]
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Running on Android.. Adding git-annex to PATH for you, and tuning for optimal behavior.
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proot error: execve("/data/data/com.termux/files/home/git-annex.linux/bin/git-annex"): No such file or directory
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proot info: possible causes:
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* the program is a script but its interpreter (eg. /bin/sh) was not found;
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* the program is an ELF but its interpreter (eg. ld-linux.so) was not found;
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* the program is a foreign binary but qemu was not specified;
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* qemu does not work correctly (if specified);
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* the loader was not found or doesn't work.
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fatal error: see `proot --help`.
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"""]]
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### Have you had any luck using git-annex before? (Sometimes we get tired of reading bug reports all day and a lil' positive end note does wonders)
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Yes! I use git-annex for many years now under Debian with no problems. Back when I recorded TV with my DVB-T card I used it to pushed files on external hard drives while being able to find them. I just now noticed
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