Merge branch 'master' into sqlite

Annex.hs

@@ -214,7 +214,7 @@ newState c r = do
 new :: Git.Repo -> IO AnnexState
 new r = do
 	r' <- Git.Config.read =<< Git.relPath r
-	let c = extractGitConfig r'
+	let c = extractGitConfig FromGitConfig r'
 	newState c =<< fixupRepo r' c
 
 {- Performs an action in the Annex monad from a starting state,
@@ -325,7 +325,7 @@ changeGitRepo r = do
 	r' <- liftIO $ adjuster r
 	changeState $ \s -> s
 		{ repo = r'
-		, gitconfig = extractGitConfig r'
+		, gitconfig = extractGitConfig FromGitConfig r'
 		}
 
 {- Adds an adjustment to the Repo data. Adjustments persist across reloads

Annex/FileMatcher.hs

@@ -20,8 +20,12 @@ module Annex.FileMatcher (
 	preferredContentParser,
 	ParseToken,
 	parsedToMatcher,
-	mkLargeFilesParser,
+	mkMatchExpressionParser,
 	largeFilesMatcher,
+	AddUnlockedMatcher,
+	addUnlockedMatcher,
+	checkAddUnlockedMatcher,
+	module Types.FileMatcher
 ) where
 
 import qualified Data.Map as M
@@ -30,12 +34,14 @@ import Annex.Common
 import Limit
 import Utility.Matcher
 import Types.Group
-import qualified Annex
 import Types.FileMatcher
+import Types.GitConfig
+import Config.GitConfig
 import Git.FilePath
 import Types.Remote (RemoteConfig)
 import Annex.CheckAttr
 import Git.CheckAttr (unspecifiedAttr)
+import qualified Git.Config
 #ifdef WITH_MAGICMIME
 import Annex.Magic
 #endif
@@ -173,8 +179,8 @@ preferredContentTokens pcd = concat
 preferredContentParser :: [ParseToken (MatchFiles Annex)] -> String -> [ParseResult (MatchFiles Annex)]
 preferredContentParser tokens = map (parseToken tokens) . tokenizeMatcher
 
-mkLargeFilesParser :: Annex (String -> [ParseResult (MatchFiles Annex)])
+mkMatchExpressionParser :: Annex (String -> [ParseResult (MatchFiles Annex)])
-mkLargeFilesParser = do
+mkMatchExpressionParser = do
 #ifdef WITH_MAGICMIME
 	magicmime <- liftIO initMagicMime
 	let mimer n f = ValueToken n (usev $ f magicmime)
@@ -197,26 +203,57 @@ mkLargeFilesParser = do
 		]
 #endif
 	return $ map parse . tokenizeMatcher
-  where
 
 {- Generates a matcher for files large enough (or meeting other criteria)
- - to be added to the annex, rather than directly to git. -}
+ - to be added to the annex, rather than directly to git.
+ -
+ - annex.largefiles is configured in git config, or git attributes,
+ - or global git-annex config, in that order.
+ -}
 largeFilesMatcher :: Annex GetFileMatcher
-largeFilesMatcher = go =<< annexLargeFiles <$> Annex.getGitConfig
+largeFilesMatcher = go =<< getGitConfigVal' annexLargeFiles
   where
-	go (Just expr) = do
+	go (HasGitConfig (Just expr)) = do
-		matcher <- mkmatcher expr
+		matcher <- mkmatcher expr "git config"
 		return $ const $ return matcher
-	go Nothing = return $ \file -> do
+	go v = return $ \file -> do
 		expr <- checkAttr "annex.largefiles" file
 		if null expr || expr == unspecifiedAttr
-			then return matchAll
+			then case v of
-			else mkmatcher expr
+				HasGlobalConfig (Just expr') ->
+					mkmatcher expr' "git-annex config"
+				_ -> return matchAll
+			else mkmatcher expr "gitattributes"
 
-	mkmatcher expr = do
+	mkmatcher expr cfgfrom = do
-		parser <- mkLargeFilesParser
+		parser <- mkMatchExpressionParser
-		either badexpr return $ parsedToMatcher $ parser expr
+		either (badexpr cfgfrom) return $ parsedToMatcher $ parser expr
-	badexpr e = giveup $ "bad annex.largefiles configuration: " ++ e
+	badexpr cfgfrom e = giveup $ "bad annex.largefiles configuration in " ++ cfgfrom ++ ": " ++ e
+
+newtype AddUnlockedMatcher = AddUnlockedMatcher (FileMatcher Annex)
+
+addUnlockedMatcher :: Annex AddUnlockedMatcher
+addUnlockedMatcher = AddUnlockedMatcher <$> 
+	(go =<< getGitConfigVal' annexAddUnlocked)
+  where
+	go (HasGitConfig (Just expr)) = mkmatcher expr "git config"
+	go (HasGlobalConfig (Just expr)) = mkmatcher expr "git annex config"
+	go _ = matchalways False
+
+	mkmatcher :: String -> String -> Annex (FileMatcher Annex)
+	mkmatcher expr cfgfrom = case Git.Config.isTrueFalse expr of
+		Just b -> matchalways b
+		Nothing -> do
+			parser <- mkMatchExpressionParser
+			either (badexpr cfgfrom) return $ parsedToMatcher $ parser expr
+	badexpr cfgfrom e = giveup $ "bad annex.addunlocked configuration in " ++ cfgfrom ++ ": " ++ e
+
+	matchalways True = return $ MOp limitAnything
+	matchalways False = return $ MOp limitNothing
+
+checkAddUnlockedMatcher :: AddUnlockedMatcher -> MatchInfo -> Annex Bool
+checkAddUnlockedMatcher (AddUnlockedMatcher matcher) mi = 
+	checkMatcher' matcher mi S.empty
 
 simply :: MatchFiles Annex -> ParseResult (MatchFiles Annex)
 simply = Right . Operation

Annex/Ingest.hs

@@ -25,6 +25,7 @@ module Annex.Ingest (
 
 import Annex.Common
 import Types.KeySource
+import Types.FileMatcher
 import Backend
 import Annex.Content
 import Annex.Perms
@@ -45,6 +46,7 @@ import Utility.Metered
 import Git.FilePath
 import Annex.InodeSentinal
 import Annex.AdjustedBranch
+import Annex.FileMatcher
 
 import Control.Exception (IOException)
 
@@ -306,10 +308,10 @@ forceParams = ifM (Annex.getState Annex.force)
  - unless symlinks are not supported. annex.addunlocked can override that.
  - Also, when in an adjusted unlocked branch, always add files unlocked.
  -}
-addUnlocked :: Annex Bool
+addUnlocked :: AddUnlockedMatcher -> MatchInfo -> Annex Bool
-addUnlocked =
+addUnlocked matcher mi =
 	((not . coreSymlinks <$> Annex.getGitConfig) <||>
-	 (annexAddUnlocked <$> Annex.getGitConfig) <||>
+	 (checkAddUnlockedMatcher matcher mi) <||>
 	 (maybe False isadjustedunlocked . snd <$> getCurrentBranch)
 	)
   where
@@ -319,12 +321,13 @@ addUnlocked =
 
 {- Adds a file to the work tree for the key, and stages it in the index.
  - The content of the key may be provided in a temp file, which will be
- - moved into place.
+ - moved into place. If no content is provided, adds an annex link but does
+ - not ingest the content.
  -
  - When the content of the key is not accepted into the annex, returns False.
  -}
-addAnnexedFile :: FilePath -> Key -> Maybe FilePath -> Annex Bool
+addAnnexedFile :: AddUnlockedMatcher -> FilePath -> Key -> Maybe FilePath -> Annex Bool
-addAnnexedFile file key mtmp = ifM addUnlocked
+addAnnexedFile matcher file key mtmp = ifM (addUnlocked matcher mi)
 	( do
 		mode <- maybe
 			(pure Nothing)
@@ -348,6 +351,24 @@ addAnnexedFile file key mtmp = ifM addUnlocked
 			Nothing -> return True
 	)
   where
+	mi = case mtmp of
+		Just tmp -> MatchingFile $ FileInfo
+			{ currFile = toRawFilePath tmp
+			, matchFile = toRawFilePath file
+			}
+		-- Provide as much info as we can without access to the
+		-- file's content. It's better to provide wrong info
+		-- than for an operation to fail just because it can't
+		-- tell if a file should be unlocked or locked.
+		Nothing -> MatchingInfo $ ProvidedInfo
+			{ providedFilePath = Right file
+			, providedKey = Right key
+			, providedFileSize = Right $ fromMaybe 0 $
+				keySize `fromKey` key
+			, providedMimeType = Right "application/octet-stream"
+			, providedMimeEncoding = Right "binary"
+			}
+	
 	linkunlocked mode = linkFromAnnex key file mode >>= \case
 		LinkAnnexFailed -> liftIO $
 			writePointerFile (toRawFilePath file) key mode

Annex/SpecialRemote.hs

@@ -94,7 +94,7 @@ autoEnable = do
 			_ -> return ()
   where
 	configured rc = fromMaybe False $
-		Git.Config.isTrue =<< M.lookup autoEnableField rc
+		Git.Config.isTrueFalse =<< M.lookup autoEnableField rc
 	canenable u = (/= DeadTrusted) <$> lookupTrust u
 	getenabledremotes = M.fromList
 		. map (\r -> (getcu r, r))

CHANGELOG

@@ -23,6 +23,20 @@ git-annex (7.20191219) UNRELEASED; urgency=medium
     like get also sped up in cases where they have to check a lot of
     files but only transfer a few files. Speedups range from 30-100%.
   * Added build dependency on the filepath-bytestring library.
+  * Fixed an oversight that had always prevented annex.resolvemerge
+    from being honored, when it was configured by git-annex config.
+  * annex.largefiles can be configured by git-annex config,
+    to more easily set a default that will also be used by clones,
+    without needing to shoehorn the expression into the gitattributes file.
+    The git config and gitattributes override that.
+  * annex.addunlocked can be set to an expression with the same format used by
+    annex.largefiles, when you want to default to unlocking some files but
+    not others.
+  * annex.addunlocked can be configured by git-annex config.
+  * git-annex-config --set/--unset: No longer change the local git config
+    setting, except for in the special case of annex.securehashesonly.
+  * Improve file ordering behavior when one parameter is "." and other
+    parameters are other directories.
 
  -- Joey Hess <id@joeyh.name>  Wed, 18 Dec 2019 15:12:40 -0400
 

Command/Add.hs

@@ -50,9 +50,10 @@ optParser desc = AddOptions
 
 seek :: AddOptions -> CommandSeek
 seek o = startConcurrency commandStages $ do
-	matcher <- largeFilesMatcher
+	largematcher <- largeFilesMatcher
-	let gofile file = ifM (checkFileMatcher matcher (fromRawFilePath file) <||> Annex.getState Annex.force)
+	addunlockedmatcher <- addUnlockedMatcher
-		( start file
+	let gofile file = ifM (checkFileMatcher largematcher (fromRawFilePath file) <||> Annex.getState Annex.force)
+		( start file addunlockedmatcher
 		, ifM (annexAddSmallFiles <$> Annex.getGitConfig)
 			( startSmall file
 			, stop
@@ -87,8 +88,8 @@ addFile file = do
 	Annex.Queue.addCommand "add" (ps++[Param "--"]) [fromRawFilePath file]
 	return True
 
-start :: RawFilePath -> CommandStart
+start :: RawFilePath -> AddUnlockedMatcher -> CommandStart
-start file = do
+start file addunlockedmatcher = do
 	mk <- liftIO $ isPointerFile file
 	maybe go fixuppointer mk
   where
@@ -101,7 +102,7 @@ start file = do
 				starting "add" (ActionItemWorkTreeFile file) $
 					if isSymbolicLink s
 						then next $ addFile file
-						else perform file
+						else perform file addunlockedmatcher
 	addpresent key = 
 		liftIO (catchMaybeIO $ R.getSymbolicLinkStatus file) >>= \case
 			Just s | isSymbolicLink s -> fixuplink key
@@ -117,9 +118,10 @@ start file = do
 		Database.Keys.addAssociatedFile key =<< inRepo (toTopFilePath file)
 		next $ addFile file
 
-perform :: RawFilePath -> CommandPerform
+perform :: RawFilePath -> AddUnlockedMatcher -> CommandPerform
-perform file = withOtherTmp $ \tmpdir -> do
+perform file addunlockedmatcher = withOtherTmp $ \tmpdir -> do
-	lockingfile <- not <$> addUnlocked
+	lockingfile <- not <$> addUnlocked addunlockedmatcher
+		(MatchingFile (FileInfo file file))
 	let cfg = LockDownConfig
 		{ lockingFile = lockingfile
 		, hardlinkFileTmpDir = Just tmpdir

Command/AddUrl.hs

@@ -94,16 +94,16 @@ parseDownloadOptions withfileoption = DownloadOptions
 
 seek :: AddUrlOptions -> CommandSeek
 seek o = startConcurrency commandStages $ do
+	addunlockedmatcher <- addUnlockedMatcher
+	let go (o', u) = do
+		r <- Remote.claimingUrl u
+		if Remote.uuid r == webUUID || rawOption (downloadOptions o')
+			then void $ commandAction $ startWeb addunlockedmatcher o' u
+			else checkUrl addunlockedmatcher r o' u
 	forM_ (addUrls o) (\u -> go (o, u))
 	case batchOption o of
 		Batch fmt -> batchInput fmt (parseBatchInput o) go
 		NoBatch -> noop
-  where
-	go (o', u) = do
-		r <- Remote.claimingUrl u
-		if Remote.uuid r == webUUID || rawOption (downloadOptions o')
-			then void $ commandAction $ startWeb o' u
-			else checkUrl r o' u
 
 parseBatchInput :: AddUrlOptions -> String -> Either String (AddUrlOptions, URLString)
 parseBatchInput o s
@@ -114,8 +114,8 @@ parseBatchInput o s
 			else Right (o { downloadOptions = (downloadOptions o) { fileOption = Just f } }, u)
 	| otherwise = Right (o, s)
 
-checkUrl :: Remote -> AddUrlOptions -> URLString -> Annex ()
+checkUrl :: AddUnlockedMatcher -> Remote -> AddUrlOptions -> URLString -> Annex ()
-checkUrl r o u = do
+checkUrl addunlockedmatcher r o u = do
 	pathmax <- liftIO $ fileNameLengthLimit "."
 	let deffile = fromMaybe (urlString2file u (pathdepthOption o) pathmax) (fileOption (downloadOptions o))
 	go deffile =<< maybe
@@ -129,49 +129,49 @@ checkUrl r o u = do
 		next $ return False
 	go deffile (Right (UrlContents sz mf)) = do
 		let f = adjustFile o (fromMaybe (maybe deffile fromSafeFilePath mf) (fileOption (downloadOptions o)))
-		void $ commandAction $ startRemote r o f u sz
+		void $ commandAction $ startRemote addunlockedmatcher r o f u sz
 	go deffile (Right (UrlMulti l)) = case fileOption (downloadOptions o) of
 		Nothing ->
 			forM_ l $ \(u', sz, f) -> do
 				let f' = adjustFile o (deffile </> fromSafeFilePath f)
-				void $ commandAction $ startRemote r o f' u' sz
+				void $ commandAction $ startRemote addunlockedmatcher r o f' u' sz
 		Just f -> case l of
 			[] -> noop
 			((u',sz,_):[]) -> do
 				let f' = adjustFile o f
-				void $ commandAction $ startRemote r o f' u' sz
+				void $ commandAction $ startRemote addunlockedmatcher r o f' u' sz
 			_ -> giveup $ unwords
 				[ "That url contains multiple files according to the"
 				, Remote.name r
 				, " remote; cannot add it to a single file."
 				]
 
-startRemote :: Remote -> AddUrlOptions -> FilePath -> URLString -> Maybe Integer -> CommandStart
+startRemote :: AddUnlockedMatcher -> Remote -> AddUrlOptions -> FilePath -> URLString -> Maybe Integer -> CommandStart
-startRemote r o file uri sz = do
+startRemote addunlockedmatcher r o file uri sz = do
 	pathmax <- liftIO $ fileNameLengthLimit "."
 	let file' = joinPath $ map (truncateFilePath pathmax) $ splitDirectories file
 	startingAddUrl uri o $ do
 		showNote $ "from " ++ Remote.name r 
 		showDestinationFile file'
-		performRemote r o uri file' sz
+		performRemote addunlockedmatcher r o uri file' sz
 
-performRemote :: Remote -> AddUrlOptions -> URLString -> FilePath -> Maybe Integer -> CommandPerform
+performRemote :: AddUnlockedMatcher -> Remote -> AddUrlOptions -> URLString -> FilePath -> Maybe Integer -> CommandPerform
-performRemote r o uri file sz = ifAnnexed (toRawFilePath file) adduri geturi
+performRemote addunlockedmatcher r o uri file sz = ifAnnexed (toRawFilePath file) adduri geturi
   where
 	loguri = setDownloader uri OtherDownloader
 	adduri = addUrlChecked o loguri file (Remote.uuid r) checkexistssize
 	checkexistssize key = return $ case sz of
 		Nothing -> (True, True, loguri)
 		Just n -> (True, n == fromMaybe n (fromKey keySize key), loguri)
-	geturi = next $ isJust <$> downloadRemoteFile r (downloadOptions o) uri file sz
+	geturi = next $ isJust <$> downloadRemoteFile addunlockedmatcher r (downloadOptions o) uri file sz
 
-downloadRemoteFile :: Remote -> DownloadOptions -> URLString -> FilePath -> Maybe Integer -> Annex (Maybe Key)
+downloadRemoteFile :: AddUnlockedMatcher -> Remote -> DownloadOptions -> URLString -> FilePath -> Maybe Integer -> Annex (Maybe Key)
-downloadRemoteFile r o uri file sz = checkCanAdd file $ do
+downloadRemoteFile addunlockedmatcher r o uri file sz = checkCanAdd file $ do
 	let urlkey = Backend.URL.fromUrl uri sz
 	liftIO $ createDirectoryIfMissing True (parentDir file)
 	ifM (Annex.getState Annex.fast <||> pure (relaxedOption o))
 		( do
-			addWorkTree (Remote.uuid r) loguri file urlkey Nothing
+			addWorkTree addunlockedmatcher (Remote.uuid r) loguri file urlkey Nothing
 			return (Just urlkey)
 		, do
 			-- Set temporary url for the urlkey
@@ -181,15 +181,15 @@ downloadRemoteFile r o uri file sz = checkCanAdd file $ do
 			let downloader = \dest p -> fst 
 				<$> Remote.retrieveKeyFile r urlkey
 					(AssociatedFile (Just (toRawFilePath file))) dest p
-			ret <- downloadWith downloader urlkey (Remote.uuid r) loguri file
+			ret <- downloadWith addunlockedmatcher downloader urlkey (Remote.uuid r) loguri file
 			removeTempUrl urlkey
 			return ret
 		)
   where
 	loguri = setDownloader uri OtherDownloader
 
-startWeb :: AddUrlOptions -> URLString -> CommandStart
+startWeb :: AddUnlockedMatcher -> AddUrlOptions -> URLString -> CommandStart
-startWeb o urlstring = go $ fromMaybe bad $ parseURI urlstring
+startWeb addunlockedmatcher o urlstring = go $ fromMaybe bad $ parseURI urlstring
   where
 	bad = fromMaybe (giveup $ "bad url " ++ urlstring) $
 		Url.parseURIRelaxed $ urlstring
@@ -209,12 +209,12 @@ startWeb o urlstring = go $ fromMaybe bad $ parseURI urlstring
 						( pure $ url2file url (pathdepthOption o) pathmax
 						, pure f
 						)
-		performWeb o urlstring file urlinfo
+		performWeb addunlockedmatcher o urlstring file urlinfo
 
-performWeb :: AddUrlOptions -> URLString -> FilePath -> Url.UrlInfo -> CommandPerform
+performWeb :: AddUnlockedMatcher -> AddUrlOptions -> URLString -> FilePath -> Url.UrlInfo -> CommandPerform
-performWeb o url file urlinfo = ifAnnexed (toRawFilePath file) addurl geturl
+performWeb addunlockedmatcher o url file urlinfo = ifAnnexed (toRawFilePath file) addurl geturl
   where
-	geturl = next $ isJust <$> addUrlFile (downloadOptions o) url urlinfo file
+	geturl = next $ isJust <$> addUrlFile addunlockedmatcher (downloadOptions o) url urlinfo file
 	addurl = addUrlChecked o url file webUUID $ \k ->
 		ifM (pure (not (rawOption (downloadOptions o))) <&&> youtubeDlSupported url)
 			( return (True, True, setDownloader url YoutubeDownloader)
@@ -249,15 +249,15 @@ addUrlChecked o url file u checkexistssize key =
  - different file, based on the title of the media. Unless the user
  - specified fileOption, which then forces using the FilePath.
  -}
-addUrlFile :: DownloadOptions -> URLString -> Url.UrlInfo -> FilePath -> Annex (Maybe Key)
+addUrlFile :: AddUnlockedMatcher -> DownloadOptions -> URLString -> Url.UrlInfo -> FilePath -> Annex (Maybe Key)
-addUrlFile o url urlinfo file =
+addUrlFile addunlockedmatcher o url urlinfo file =
 	ifM (Annex.getState Annex.fast <||> pure (relaxedOption o))
-		( nodownloadWeb o url urlinfo file
+		( nodownloadWeb addunlockedmatcher o url urlinfo file
-		, downloadWeb o url urlinfo file
+		, downloadWeb addunlockedmatcher o url urlinfo file
 		)
 
-downloadWeb :: DownloadOptions -> URLString -> Url.UrlInfo -> FilePath -> Annex (Maybe Key)
+downloadWeb :: AddUnlockedMatcher -> DownloadOptions -> URLString -> Url.UrlInfo -> FilePath -> Annex (Maybe Key)
-downloadWeb o url urlinfo file =
+downloadWeb addunlockedmatcher o url urlinfo file =
 	go =<< downloadWith' downloader urlkey webUUID url (AssociatedFile (Just (toRawFilePath file)))
   where
 	urlkey = addSizeUrlKey urlinfo $ Backend.URL.fromUrl url Nothing
@@ -272,7 +272,7 @@ downloadWeb o url urlinfo file =
 	normalfinish tmp = checkCanAdd file $ do
 		showDestinationFile file
 		liftIO $ createDirectoryIfMissing True (parentDir file)
-		finishDownloadWith tmp webUUID url file
+		finishDownloadWith addunlockedmatcher tmp webUUID url file
 	tryyoutubedl tmp
 		-- Ask youtube-dl what filename it will download
 		-- first, and check if that is already an annexed file,
@@ -298,7 +298,7 @@ downloadWeb o url urlinfo file =
 							cleanuptmp
 							checkCanAdd dest $ do
 								showDestinationFile dest
-								addWorkTree webUUID mediaurl dest mediakey (Just mediafile)
+								addWorkTree addunlockedmatcher webUUID mediaurl dest mediakey (Just mediafile)
 								return $ Just mediakey
 						Right Nothing -> normalfinish tmp
 						Left msg -> do
@@ -341,13 +341,13 @@ showDestinationFile file = do
  - Downloads the url, sets up the worktree file, and returns the
  - real key.
  -}
-downloadWith :: (FilePath -> MeterUpdate -> Annex Bool) -> Key -> UUID -> URLString -> FilePath -> Annex (Maybe Key)
+downloadWith :: AddUnlockedMatcher -> (FilePath -> MeterUpdate -> Annex Bool) -> Key -> UUID -> URLString -> FilePath -> Annex (Maybe Key)
-downloadWith downloader dummykey u url file =
+downloadWith addunlockedmatcher downloader dummykey u url file =
 	go =<< downloadWith' downloader dummykey u url afile
   where
 	afile = AssociatedFile (Just (toRawFilePath file))
 	go Nothing = return Nothing
-	go (Just tmp) = finishDownloadWith tmp u url file
+	go (Just tmp) = finishDownloadWith addunlockedmatcher tmp u url file
 
 {- Like downloadWith, but leaves the dummy key content in
  - the returned location. -}
@@ -363,8 +363,8 @@ downloadWith' downloader dummykey u url afile =
 			then return (Just tmp)
 			else return Nothing
 
-finishDownloadWith :: FilePath -> UUID -> URLString -> FilePath -> Annex (Maybe Key)
+finishDownloadWith :: AddUnlockedMatcher -> FilePath -> UUID -> URLString -> FilePath -> Annex (Maybe Key)
-finishDownloadWith tmp u url file = do
+finishDownloadWith addunlockedmatcher tmp u url file = do
 	backend <- chooseBackend file
 	let source = KeySource
 		{ keyFilename = file
@@ -374,7 +374,7 @@ finishDownloadWith tmp u url file = do
 	genKey source nullMeterUpdate backend >>= \case
 		Nothing -> return Nothing
 		Just (key, _) -> do
-			addWorkTree u url file key (Just tmp)
+			addWorkTree addunlockedmatcher u url file key (Just tmp)
 			return (Just key)
 
 {- Adds the url size to the Key. -}
@@ -384,8 +384,8 @@ addSizeUrlKey urlinfo key = alterKey key $ \d -> d
 	}
 
 {- Adds worktree file to the repository. -}
-addWorkTree :: UUID -> URLString -> FilePath -> Key -> Maybe FilePath -> Annex ()
+addWorkTree :: AddUnlockedMatcher -> UUID -> URLString -> FilePath -> Key -> Maybe FilePath -> Annex ()
-addWorkTree u url file key mtmp = case mtmp of
+addWorkTree addunlockedmatcher u url file key mtmp = case mtmp of
 	Nothing -> go
 	Just tmp -> do
 		-- Move to final location for large file check.
@@ -407,15 +407,15 @@ addWorkTree u url file key mtmp = case mtmp of
 		maybeShowJSON $ JSONChunk [("key", serializeKey key)]
 		setUrlPresent key url
 		logChange key u InfoPresent
-		ifM (addAnnexedFile file key mtmp)
+		ifM (addAnnexedFile addunlockedmatcher file key mtmp)
 			( do
 				when (isJust mtmp) $
 					logStatus key InfoPresent
 			, maybe noop (\tmp -> pruneTmpWorkDirBefore tmp (liftIO . nukeFile)) mtmp
 			)
 
-nodownloadWeb :: DownloadOptions -> URLString -> Url.UrlInfo -> FilePath -> Annex (Maybe Key)
+nodownloadWeb :: AddUnlockedMatcher -> DownloadOptions -> URLString -> Url.UrlInfo -> FilePath -> Annex (Maybe Key)
-nodownloadWeb o url urlinfo file
+nodownloadWeb addunlockedmatcher o url urlinfo file
 	| Url.urlExists urlinfo = if rawOption o
 		then nomedia
 		else either (const nomedia) usemedia
@@ -426,20 +426,20 @@ nodownloadWeb o url urlinfo file
   where
 	nomedia = do
 		let key = Backend.URL.fromUrl url (Url.urlSize urlinfo)
-		nodownloadWeb' url key file
+		nodownloadWeb' addunlockedmatcher url key file
 	usemedia mediafile = do
 		let dest = if isJust (fileOption o)
 			then file
 			else takeFileName mediafile
 		let mediaurl = setDownloader url YoutubeDownloader
 		let mediakey = Backend.URL.fromUrl mediaurl Nothing
-		nodownloadWeb' mediaurl mediakey dest
+		nodownloadWeb' addunlockedmatcher mediaurl mediakey dest
 
-nodownloadWeb' :: URLString -> Key -> FilePath -> Annex (Maybe Key)
+nodownloadWeb' :: AddUnlockedMatcher -> URLString -> Key -> FilePath -> Annex (Maybe Key)
-nodownloadWeb' url key file = checkCanAdd file $ do
+nodownloadWeb' addunlockedmatcher url key file = checkCanAdd file $ do
 	showDestinationFile file
 	liftIO $ createDirectoryIfMissing True (parentDir file)
-	addWorkTree webUUID url file key Nothing
+	addWorkTree addunlockedmatcher webUUID url file key Nothing
 	return (Just key)
 
 url2file :: URI -> Maybe Int -> Int -> FilePath

Command/Config.hs

@@ -5,6 +5,8 @@
  - Licensed under the GNU AGPL version 3 or higher.
  -}
 
+{-# LANGUAGE OverloadedStrings #-}
+
 module Command.Config where
 
 import Command
@@ -54,11 +56,13 @@ seek :: Action -> CommandSeek
 seek (SetConfig ck@(ConfigKey name) val) = commandAction $
 	startingUsualMessages (decodeBS' name) (ActionItemOther (Just (fromConfigValue val))) $ do
 		setGlobalConfig ck val
+		when (needLocalUpdate ck) $
 			setConfig ck (fromConfigValue val)
 		next $ return True
 seek (UnsetConfig ck@(ConfigKey name)) = commandAction $
 	startingUsualMessages (decodeBS' name) (ActionItemOther (Just "unset")) $do
 		unsetGlobalConfig ck
+		when (needLocalUpdate ck) $
 			unsetConfig ck
 		next $ return True
 seek (GetConfig ck) = commandAction $
@@ -67,3 +71,7 @@ seek (GetConfig ck) = commandAction $
 			Nothing -> return ()
 			Just (ConfigValue v) -> liftIO $ S8.putStrLn v
 		next $ return True
+
+needLocalUpdate :: ConfigKey -> Bool
+needLocalUpdate (ConfigKey "annex.securehashesonly") = True
+needLocalUpdate _ = False

Command/Export.hs

@@ -27,7 +27,6 @@ import Annex.Content
 import Annex.Transfer
 import Annex.CatFile
 import Annex.FileMatcher
-import Types.FileMatcher
 import Annex.RemoteTrackingBranch
 import Logs.Location
 import Logs.Export

Command/FuzzTest.hs

@@ -41,7 +41,7 @@ start = do
 	stop
 
 guardTest :: Annex ()
-guardTest = unlessM (fromMaybe False . Git.Config.isTrue' <$> getConfig key mempty) $
+guardTest = unlessM (fromMaybe False . Git.Config.isTrueFalse' <$> getConfig key mempty) $
 	giveup $ unlines
 		[ "Running fuzz tests *writes* to and *deletes* files in"
 		, "this repository, and pushes those changes to other"

Command/Import.hs

@@ -102,7 +102,8 @@ seek o@(LocalImportOptions {}) = startConcurrency commandStages $ do
 	unless (null inrepops) $ do
 		giveup $ "cannot import files from inside the working tree (use git annex add instead): " ++ unwords inrepops
 	largematcher <- largeFilesMatcher
-	(commandAction . startLocal largematcher (duplicateMode o))
+	addunlockedmatcher <- addUnlockedMatcher
+	(commandAction . startLocal addunlockedmatcher largematcher (duplicateMode o))
 		`withPathContents` importFiles o
 seek o@(RemoteImportOptions {}) = startConcurrency commandStages $ do
 	r <- getParsed (importFromRemote o)
@@ -114,8 +115,8 @@ seek o@(RemoteImportOptions {}) = startConcurrency commandStages $ do
 		(importToSubDir o)
 	seekRemote r (importToBranch o) subdir
 
-startLocal :: GetFileMatcher -> DuplicateMode -> (FilePath, FilePath) -> CommandStart
+startLocal :: AddUnlockedMatcher -> GetFileMatcher -> DuplicateMode -> (FilePath, FilePath) -> CommandStart
-startLocal largematcher mode (srcfile, destfile) =
+startLocal addunlockedmatcher largematcher mode (srcfile, destfile) =
 	ifM (liftIO $ isRegularFile <$> getSymbolicLinkStatus srcfile)
 		( starting "import" (ActionItemWorkTreeFile (toRawFilePath destfile))
 			pickaction
@@ -208,7 +209,11 @@ startLocal largematcher mode (srcfile, destfile) =
 		warning $ "not overwriting existing " ++ destfile ++ " " ++ why
 		stop
 	lockdown a = do
-		lockingfile <- not <$> addUnlocked
+		let mi = MatchingFile $ FileInfo
+			{ currFile = toRawFilePath srcfile
+			, matchFile = toRawFilePath destfile
+			}
+		lockingfile <- not <$> addUnlocked addunlockedmatcher mi
 		-- Minimal lock down with no hard linking so nothing
 		-- has to be done to clean up from it.
 		let cfg = LockDownConfig

Command/ImportFeed.hs

@@ -38,6 +38,7 @@ import Annex.YoutubeDl
 import Types.MetaData
 import Logs.MetaData
 import Annex.MetaData
+import Annex.FileMatcher
 import Command.AddUrl (addWorkTree)
 
 cmd :: Command
@@ -62,11 +63,12 @@ optParser desc = ImportFeedOptions
 
 seek :: ImportFeedOptions -> CommandSeek
 seek o = do
+	addunlockedmatcher <- addUnlockedMatcher
 	cache <- getCache (templateOption o)
-	forM_ (feedUrls o) (getFeed o cache)
+	forM_ (feedUrls o) (getFeed addunlockedmatcher o cache)
 
-getFeed :: ImportFeedOptions -> Cache -> URLString -> CommandSeek
+getFeed :: AddUnlockedMatcher -> ImportFeedOptions -> Cache -> URLString -> CommandSeek
-getFeed opts cache url = do
+getFeed addunlockedmatcher opts cache url = do
 	showStart' "importfeed" (Just url)
 	downloadFeed url >>= \case
 		Nothing -> showEndResult =<< feedProblem url
@@ -77,7 +79,7 @@ getFeed opts cache url = do
 				[] -> debugfeedcontent feedcontent "bad feed content; no enclosures to download"
 				l -> do
 					showEndOk
-					ifM (and <$> mapM (performDownload opts cache) l)
+					ifM (and <$> mapM (performDownload addunlockedmatcher opts cache) l)
 						( clearFeedProblem url
 						, void $ feedProblem url 
 							"problem downloading some item(s) from feed"
@@ -153,8 +155,8 @@ downloadFeed url
 			, return Nothing
 			)
 
-performDownload :: ImportFeedOptions -> Cache -> ToDownload -> Annex Bool
+performDownload :: AddUnlockedMatcher -> ImportFeedOptions -> Cache -> ToDownload -> Annex Bool
-performDownload opts cache todownload = case location todownload of
+performDownload addunlockedmatcher opts cache todownload = case location todownload of
 	Enclosure url -> checkknown url $
 		rundownload url (takeWhile (/= '?') $ takeExtension url) $ \f -> do
 			r <- Remote.claimingUrl url
@@ -171,7 +173,7 @@ performDownload opts cache todownload = case location todownload of
 						-- don't use youtube-dl
 						, rawOption = True
 						}
-					maybeToList <$> addUrlFile dlopts url urlinfo f
+					maybeToList <$> addUrlFile addunlockedmatcher dlopts url urlinfo f
 				else do
 					res <- tryNonAsync $ maybe
 						(error $ "unable to checkUrl of " ++ Remote.name r)
@@ -181,10 +183,10 @@ performDownload opts cache todownload = case location todownload of
 						Left _ -> return []
 						Right (UrlContents sz _) ->
 							maybeToList <$>
-								downloadRemoteFile r (downloadOptions opts) url f sz
+								downloadRemoteFile addunlockedmatcher r (downloadOptions opts) url f sz
 						Right (UrlMulti l) -> do
 							kl <- forM l $ \(url', sz, subf) ->
-								downloadRemoteFile r (downloadOptions opts) url' (f </> fromSafeFilePath subf) sz
+								downloadRemoteFile addunlockedmatcher r (downloadOptions opts) url' (f </> fromSafeFilePath subf) sz
 							return $ if all isJust kl
 								then catMaybes kl
 								else []
@@ -273,7 +275,7 @@ performDownload opts cache todownload = case location todownload of
 							[] -> ".m"
 							s -> s
 						ok <- rundownload linkurl ext $ \f -> do
-							addWorkTree webUUID mediaurl f mediakey (Just mediafile)
+							addWorkTree addunlockedmatcher webUUID mediaurl f mediakey (Just mediafile)
 							return [mediakey]
 						return (Just ok)
 					-- youtude-dl didn't support it, so
@@ -285,16 +287,16 @@ performDownload opts cache todownload = case location todownload of
 						return Nothing
 			return (fromMaybe False r)
 	  where
-		downloadlink = performDownload opts cache todownload
+		downloadlink = performDownload addunlockedmatcher opts cache todownload
 			{ location = Enclosure linkurl }
 
 	addmediafast linkurl mediaurl mediakey =
 		ifM (pure (not (rawOption (downloadOptions opts)))
 		     <&&> youtubeDlSupported linkurl)
 			( rundownload linkurl ".m" $ \f -> do
-				addWorkTree webUUID mediaurl f mediakey Nothing
+				addWorkTree addunlockedmatcher webUUID mediaurl f mediakey Nothing
 				return [mediakey]
-			, performDownload opts cache todownload
+			, performDownload addunlockedmatcher opts cache todownload
 				{ location = Enclosure linkurl }
 			)
 

Command/MatchExpression.hs

@@ -9,7 +9,6 @@ module Command.MatchExpression where
 
 import Command
 import Annex.FileMatcher
-import Types.FileMatcher
 import Utility.DataUnits
 import Utility.Matcher
 import Annex.UUID
@@ -75,7 +74,7 @@ optParser desc = MatchExpressionOptions
 seek :: MatchExpressionOptions -> CommandSeek
 seek o = do
 	parser <- if largeFilesExpression o
-		then mkLargeFilesParser
+		then mkMatchExpressionParser
 		else do
 			u <- getUUID
 			pure $ preferredContentParser $ preferredContentTokens $ PCD

Config/GitConfig.hs

@@ -1,6 +1,6 @@
 {- git-annex configuration
  -
- - Copyright 2017 Joey Hess <id@joeyh.name>
+ - Copyright 2017-2019 Joey Hess <id@joeyh.name>
  -
  - Licensed under the GNU AGPL version 3 or higher.
  -}
@@ -15,22 +15,26 @@ import Logs.Config
 
 {- Gets a specific setting from GitConfig. If necessary, loads the
  - repository-global defaults when the GitConfig does not yet 
- - have a value. -}
+ - have a value.
+ -
+ - Note: Be sure to add the config value to mergeGitConfig.
+ -}
 getGitConfigVal :: (GitConfig -> Configurable a) -> Annex a
-getGitConfigVal f = do
+getGitConfigVal f = getGitConfigVal' f >>= \case
-	v <- f <$> Annex.getGitConfig
+	HasGlobalConfig c -> return c
-	case v of
+	DefaultConfig d -> return d
-		HasConfig c -> return c
+	HasGitConfig c -> return c
+
+getGitConfigVal' :: (GitConfig -> Configurable a) -> Annex (Configurable a)
+getGitConfigVal' f = (f <$> Annex.getGitConfig) >>= \case
 	DefaultConfig _ -> do
 		r <- Annex.gitRepo
 		m <- loadGlobalConfig
-			let globalgc = extractGitConfig (r { config = m })
+		let globalgc = extractGitConfig FromGlobalConfig (r { config = m })
 		-- This merge of the repo-global config and the git
 		-- config makes all repository-global default
-			-- values populate the GitConfig with HasConfig
+		-- values populate the GitConfig with HasGlobalConfig
 		-- values, so it will only need to be done once.
 		Annex.changeGitConfig (\gc -> mergeGitConfig gc globalgc)
-			v' <- f <$> Annex.getGitConfig
+		f <$> Annex.getGitConfig
-			case v' of
+	c -> return c
-				HasConfig c -> return c
-				DefaultConfig d -> return d

Git/Branch.hs

@@ -137,7 +137,7 @@ applyCommitModeForCommitTree :: CommitMode -> [CommandParam] -> Repo -> [Command
 applyCommitModeForCommitTree commitmode ps r
 	| commitmode == ManualCommit =
 		case Git.Config.getMaybe "commit.gpgsign" r of
-			Just s | Git.Config.isTrue' s == Just True ->
+			Just s | Git.Config.isTrueFalse' s == Just True ->
 				Param "-S":ps
 			_ -> ps'
 	| otherwise = ps'

Git/Config.hs

@@ -156,12 +156,12 @@ parse s
 		. map (\(k,v) -> (ConfigKey k, [ConfigValue (S.drop 1 v)])) 
 		. map (S.break (== c))
 
-{- Checks if a string from git config is a true value. -}
+{- Checks if a string from git config is a true/false value. -}
-isTrue :: String -> Maybe Bool
+isTrueFalse :: String -> Maybe Bool
-isTrue = isTrue' . ConfigValue . encodeBS'
+isTrueFalse = isTrueFalse' . ConfigValue . encodeBS'
 
-isTrue' :: ConfigValue -> Maybe Bool
+isTrueFalse' :: ConfigValue -> Maybe Bool
-isTrue' (ConfigValue s)
+isTrueFalse' (ConfigValue s)
 	| s' == "true" = Just True
 	| s' == "false" = Just False
 	| otherwise = Nothing
@@ -177,7 +177,7 @@ boolConfig' True = "true"
 boolConfig' False = "false"
 
 isBare :: Repo -> Bool
-isBare r = fromMaybe False $ isTrue' =<< getMaybe coreBare r
+isBare r = fromMaybe False $ isTrueFalse' =<< getMaybe coreBare r
 
 coreBare :: ConfigKey
 coreBare = "core.bare"

Logs/Config.hs

@@ -46,6 +46,7 @@ unsetGlobalConfig name = do
 		setGlobalConfig' name (ConfigValue mempty)
 
 -- Reads the global config log every time.
+-- It's more efficient to use Config.GitConfig.
 getGlobalConfig :: ConfigKey -> Annex (Maybe ConfigValue)
 getGlobalConfig name = M.lookup name <$> loadGlobalConfig
 

Logs/PreferredContent.hs

@@ -42,7 +42,6 @@ import Types.Group
 import Types.Remote (RemoteConfig)
 import Logs.Group
 import Logs.Remote
-import Types.FileMatcher
 import Types.StandardGroups
 import Limit
 

Remote/External.hs

@@ -18,7 +18,7 @@ import Types.CleanupActions
 import Types.UrlContents
 import qualified Git
 import Config
-import Git.Config (isTrue, boolConfig)
+import Git.Config (isTrueFalse, boolConfig)
 import Git.Env
 import Remote.Helper.Special
 import Remote.Helper.ExportImport
@@ -157,7 +157,7 @@ externalSetup _ mu _ c gc = do
 	(c', _encsetup) <- encryptionSetup c gc
 
 	c'' <- case M.lookup "readonly" c of
-		Just v | isTrue v == Just True -> do
+		Just v | isTrueFalse v == Just True -> do
 			setConfig (remoteConfig (fromJust (lookupName c)) "readonly") (boolConfig True)
 			return c'
 		_ -> do

Remote/Git.hs

@@ -857,13 +857,13 @@ mkState r u gc = do
   where
 	go
 		| remoteAnnexCheckUUID gc = return
-			(return True, return (r, extractGitConfig r))
+			(return True, return (r, extractGitConfig FromGitConfig r))
 		| otherwise = do
 			rv <- liftIO newEmptyMVar
 			let getrepo = ifM (liftIO $ isEmptyMVar rv)
 				( do
 					r' <- tryGitConfigRead False r
-					let t = (r', extractGitConfig r')
+					let t = (r', extractGitConfig FromGitConfig r')
 					void $ liftIO $ tryPutMVar rv t
 					return t
 				, liftIO $ readMVar rv

Types/Difference.hs

@@ -96,7 +96,7 @@ getDifferences :: Git.Repo -> Differences
 getDifferences r = mkDifferences $ S.fromList $
 	mapMaybe getmaybe [minBound .. maxBound]
   where
-	getmaybe d = case Git.Config.isTrue' =<< Git.Config.getMaybe (differenceConfigKey d) r of
+	getmaybe d = case Git.Config.isTrueFalse' =<< Git.Config.getMaybe (differenceConfigKey d) r of
 		Just True -> Just d
 		_ -> Nothing
 

Types/Distribution.hs

@@ -12,7 +12,7 @@ import Utility.Split
 import Types.Key
 import Key
 import Data.Time.Clock
-import Git.Config (isTrue, boolConfig)
+import Git.Config (isTrueFalse, boolConfig)
 
 import Control.Applicative
 import Prelude
@@ -71,7 +71,7 @@ toAutoUpgrade :: Maybe String -> AutoUpgrade
 toAutoUpgrade Nothing = AskUpgrade
 toAutoUpgrade (Just s)
 	| s == "ask" = AskUpgrade
-	| isTrue s == Just True = AutoUpgrade
+	| isTrueFalse s == Just True = AutoUpgrade
 	| otherwise = NoAutoUpgrade
 
 fromAutoUpgrade :: AutoUpgrade -> String

Types/GitConfig.hs

@@ -9,6 +9,7 @@
 
 module Types.GitConfig ( 
 	Configurable(..),
+	ConfigSource(..),
 	GitConfig(..),
 	extractGitConfig,
 	mergeGitConfig,
@@ -46,13 +47,17 @@ import qualified Data.Set as S
 -- | A configurable value, that may not be fully determined yet because
 -- the global git config has not yet been loaded.
 data Configurable a
-	= HasConfig a
+	= HasGitConfig a
-	-- ^ Value is fully determined.
+	-- ^ The git config has a value.
+	| HasGlobalConfig a
+	-- ^ The global config has a value (and the git config does not).
 	| DefaultConfig a
 	-- ^ A default value is known, but not all config sources
 	-- have been read yet.
 	deriving (Show)
 
+data ConfigSource = FromGitConfig | FromGlobalConfig
+
 {- Main git-annex settings. Each setting corresponds to a git-config key
  - such as annex.foo -}
 data GitConfig = GitConfig
@@ -80,7 +85,7 @@ data GitConfig = GitConfig
 	, annexYoutubeDlOptions :: [String]
 	, annexAriaTorrentOptions :: [String]
 	, annexCrippledFileSystem :: Bool
-	, annexLargeFiles :: Maybe String
+	, annexLargeFiles :: Configurable (Maybe String)
 	, annexGitAddToAnnex :: Bool
 	, annexAddSmallFiles :: Bool
 	, annexFsckNudge :: Bool
@@ -97,7 +102,7 @@ data GitConfig = GitConfig
 	, annexVerify :: Bool
 	, annexPidLock :: Bool
 	, annexPidLockTimeout :: Seconds
-	, annexAddUnlocked :: Bool
+	, annexAddUnlocked :: Configurable (Maybe String)
 	, annexSecureHashesOnly :: Bool
 	, annexRetry :: Maybe Integer
 	, annexRetryDelay :: Maybe Seconds
@@ -116,8 +121,8 @@ data GitConfig = GitConfig
 	, gpgCmd :: GpgCmd
 	}
 
-extractGitConfig :: Git.Repo -> GitConfig
+extractGitConfig :: ConfigSource -> Git.Repo -> GitConfig
-extractGitConfig r = GitConfig
+extractGitConfig configsource r = GitConfig
 	{ annexVersion = RepoVersion <$> getmayberead (annex "version")
 	, annexUUID = maybe NoUUID toUUID $ getmaybe (annex "uuid")
 	, annexNumCopies = NumCopies <$> getmayberead (annex "numcopies")
@@ -151,7 +156,8 @@ extractGitConfig r = GitConfig
 	, annexYoutubeDlOptions = getwords (annex "youtube-dl-options")
 	, annexAriaTorrentOptions = getwords (annex "aria-torrent-options")
 	, annexCrippledFileSystem = getbool (annex "crippledfilesystem") False
-	, annexLargeFiles = getmaybe (annex "largefiles")
+	, annexLargeFiles = configurable Nothing $
+		fmap Just $ getmaybe (annex "largefiles")
 	, annexGitAddToAnnex = getbool (annex "gitaddtoannex") True
 	, annexAddSmallFiles = getbool (annex "addsmallfiles") True
 	, annexFsckNudge = getbool (annex "fscknudge") True
@@ -171,7 +177,8 @@ extractGitConfig r = GitConfig
 	, annexPidLock = getbool (annex "pidlock") False
 	, annexPidLockTimeout = Seconds $ fromMaybe 300 $
 		getmayberead (annex "pidlocktimeout")
-	, annexAddUnlocked = getbool (annex "addunlocked") False
+	, annexAddUnlocked = configurable Nothing $
+		fmap Just $ getmaybe (annex "addunlocked")
 	, annexSecureHashesOnly = getbool (annex "securehashesonly") False
 	, annexRetry = getmayberead (annex "retry")
 	, annexRetryDelay = Seconds
@@ -201,7 +208,7 @@ extractGitConfig r = GitConfig
 	}
   where
 	getbool k d = fromMaybe d $ getmaybebool k
-	getmaybebool k = Git.Config.isTrue' =<< getmaybe' k
+	getmaybebool k = Git.Config.isTrueFalse' =<< getmaybe' k
 	getmayberead k = readish =<< getmaybe k
 	getmaybe = fmap fromConfigValue . getmaybe'
 	getmaybe' k = Git.Config.getMaybe k r
@@ -209,7 +216,9 @@ extractGitConfig r = GitConfig
 	getwords k = fromMaybe [] $ words <$> getmaybe k
 
 	configurable d Nothing = DefaultConfig d
-	configurable _ (Just v) = HasConfig v
+	configurable _ (Just v) = case configsource of
+		FromGitConfig -> HasGitConfig v
+		FromGlobalConfig -> HasGlobalConfig v
 
 	annex k = ConfigKey $ "annex." <> k
 			
@@ -221,13 +230,17 @@ mergeGitConfig :: GitConfig -> GitConfig -> GitConfig
 mergeGitConfig gitconfig repoglobals = gitconfig
 	{ annexAutoCommit = merge annexAutoCommit
 	, annexSyncContent = merge annexSyncContent
+	, annexResolveMerge = merge annexResolveMerge
+	, annexLargeFiles = merge annexLargeFiles
+	, annexAddUnlocked = merge annexAddUnlocked
 	}
   where
 	merge f = case f gitconfig of
-		HasConfig v -> HasConfig v
+		HasGitConfig v -> HasGitConfig v
 		DefaultConfig d -> case f repoglobals of
-			HasConfig v -> HasConfig v
+			HasGlobalConfig v -> HasGlobalConfig v
-			DefaultConfig _ -> HasConfig d
+			_ -> HasGitConfig d
+		HasGlobalConfig v -> HasGlobalConfig v
 
 {- Per-remote git-annex settings. Each setting corresponds to a git-config
  - key such as <remote>.annex-foo, or if that is not set, a default from
@@ -343,7 +356,7 @@ extractRemoteGitConfig r remotename = do
 		}
   where
 	getbool k d = fromMaybe d $ getmaybebool k
-	getmaybebool k = Git.Config.isTrue' =<< getmaybe' k
+	getmaybebool k = Git.Config.isTrueFalse' =<< getmaybe' k
 	getmayberead k = readish =<< getmaybe k
 	getmaybe = fmap fromConfigValue . getmaybe'
 	getmaybe' k = mplus (Git.Config.getMaybe (key k) r)

Utility/Path.hs

@@ -113,7 +113,10 @@ prop_upFrom_basics dir
  - are all equivilant.
  -}
 dirContains :: FilePath -> FilePath -> Bool
-dirContains a b = a == b || a' == b' || (addTrailingPathSeparator a') `isPrefixOf` b'
+dirContains a b = a == b
+	|| a' == b'
+	|| (addTrailingPathSeparator a') `isPrefixOf` b'
+	|| a' == "." && normalise ("." </> b') == b'
   where
 	a' = norm a
 	b' = norm b

doc/bugs/A_case_where_file_tracked_by_git_unexpectedly_becomes_annex_pointer_file.mdwn

@@ -74,3 +74,4 @@ Thanks for having a look.
 [0]: https://github.com/datalad/datalad/issues/3890
 
 [[!meta author=kyle]]
+[[!tag projects/datalad]]

doc/bugs/A_case_where_file_tracked_by_git_unexpectedly_becomes_annex_pointer_file/comment_1_ea82bf47752807531870651653160f1c._comment

@@ -0,0 +1,97 @@
+[[!comment format=mdwn
+ username="joey"
+ subject="""comment 1"""
+ date="2019-12-26T16:56:38Z"
+ content="""
+The title makes it sound like a work tree file gets replaced with a
+dangling pointer file, which is not the case. A worktree file that was
+not annexed is is being added to the annex, if you choose to commit that
+state.
+
+For whatever reason, git becomes confused about whether this file is
+modified. I seem to recall that git distrusts information it recorded in
+its own index if the mtime of the index file is too close to the
+mtime recorded inside it, or something like that. (Likely as a
+workaround for mtime granularity issues with various filesystems.) Whatever
+the reason, git-annex is not involved in it; it will happen sometimes even
+when git-annex has not initialized the repo and is not being used.
+
+It's not normally a problem that git gets confused or distrusts its
+index or whatever, since all it does is stat the file, or
+feed it through the clean filter again, and if the file is not
+modified, nothing changes.
+
+Why does the clean filter decide to add the file to annex in this case?
+
+Well, because this is all happening inside this:
+	
+	git -c annex.largefiles=anything annex add -- file-annex
+
+And there you've told it to add all files to the annex with
+annex.largefiles=anything. So it does.
+
+To complete the description of what happens:
+`git-annex add` runs `git add` on the `file-annex` symlink it's adding. 
+`git add file-annex`, for whatever reason, decides to run the clean filter on
+file-git.
+The annex.largefiles=anything gets inherited through this chain of calls.
+
+While the resulting "change" does not get staged by `git add`
+(it was never asked to operate on that file), the clean filter
+duly ingests the content into the annex, and remembers its inode.
+So when the clean filter later gets run by `git status`, it sees an inode
+it knows it saw before, and assumes it should remain annexed.
+(This is why the commit that checks for known inodes was fingered by the
+bisection.)
+
+---
+
+Note that, you can accomplish the same thing without setting
+annex.largefiles, assuming a current version of git-annex:
+
+	git add file-git
+	git annex add file-annex
+
+I think the only reason for setting annex.largefiles in either of the two
+places you did is if there's a default value that you want to
+temporarily override?
+
+----
+
+Also, just touching file-git before the annex.largefiles=anything
+operation causes the same problem, again git-annex add runs git add
+file-annex, which runs the clean filter on file-git, which this time
+is legitimately modified.
+
+---
+
+Possible ways to improve this short of improving git's behavior:
+
+`git annex` could set annex.gitaddtoannex=false when it runs `git add`.
+Since git-annex never relies on `git add` adding files to the annex,
+that seems entirely safe to always do (perhaps even when running all git
+commands aside from git-annex commands of course). But, that would
+not help with a variant where rather than `git-annex add`,
+this is run:
+
+	git -c annex.largefiles=anything add file-annex
+
+The clean filter could delay long enough that git stops distrusting
+its index based on timestamps. A 1 second sleep if the file's mtime
+is too close to the current time works; I prototyped a patch doing that.
+But, that does not deal with the case
+mentioned above where file-git gets touched or legitimately modified.
+
+The clean filter could check if the file is already
+in the index but is not annexed, and avoid converting it to annexed.
+But that would prevent legitimate conversions from git to annexed
+as well, which rely on the same kind of use of annex.largefiles.
+
+Temporary overrides of annex.largefiles could be ignored by the clean
+filter. Same problem as previous.
+
+So, I think that fixing this will involve adding a new interface for
+converting between git and annexed files that does not involve
+-c annex.largefiles. That plus having the clean filter check for
+non-annexed files seems like the best approach.
+"""]]

doc/bugs/be_robust_to_additions_of_more_specific_mime_types_to_libmagic___40__e.g._application__47__json__41__.mdwn

@@ -0,0 +1,22 @@
+### Please describe the problem.
+
+[Original report](https://git-annex.branchable.com/bugs/manages_to_incorrectly_add_to_annex_instead_of_git_based_on___34__mimetype__34___-_we_cannot_figure_it_out_why/)  was about the change in behavior of git-annex (as a whole installed bundle) that .json files started to be added to git-annex instead of git, whenever .json files remained text files and .gitattributes was configured to add all files with mimetype of text to go into git.
+It happened due to the fact that libmagic added handling for detecting .json files and reporting that they are `application/json` instead of `text/plain` as before.
+
+Note that [initial demand/idea behind adding treatment of mime types](https://git-annex.branchable.com/devblog/day_360__annex.largefiles_mimetype/) was actually to provide automation for the most reasonable decision making on what goes into git and what annex, based on either a file a text file or binary.
+
+The bug report referenced above was just marked "done" with a comment that "the magic database changing behavior is not a bug in git-annex" without actually addressing the underlying issue.  I even somehow got a wrong impression that "we had it fixed" and was surprised to stumble into it again.  I think that the issue should be properly addressed, ideally without requiring users to adjust their `.gitattribute` files (and introducing newer git annex version dependency), so that the desired behavior of having text files going into git, not git-annex, was maintained *even across changes in libmagic DB*.
+
+One, IMHO the easiest way, now that `-k` (keep going) [issue was fixed in libmagic](https://bugs.astron.com/view.php?id=77), would be for git-annex to treat "mimetype" specification as "if any mimetype matches" and ask libmagic about all mimetypes of a file, e.g.:
+
+[[!format sh """
+$> file --mime-type -Lk 1.json
+1.json: application/json\012- text/plain
+"""]]
+
+so that if any structured text file would soon acquire additional, more specific mimetype (e.g., `.md` could be reported as `application/markdown`, just not yet), previous specifications in .gitattributes would still work -- after all those files remain `text/plain` files!
+
+If strict matching (not sure yet about a use case where it would really be needed) by the most specialized mime type is needed, additional "mimetypefirstguess" or alike could be added.
+
+[[!meta author=yoh]]
+[[!tag projects/datalad]]

doc/bugs/be_robust_to_additions_of_more_specific_mime_types_to_libmagic___40__e.g._application__47__json__41__/comment_1_a18cfae149effed2375b3b0be021ac3a._comment

@@ -0,0 +1,8 @@
+[[!comment format=mdwn
+ username="yarikoptic"
+ avatar="http://cdn.libravatar.org/avatar/f11e9c84cb18d26a1748c33b48c924b4"
+ subject="oh hoh, there is mimeencoding now"
+ date="2019-12-20T19:54:04Z"
+ content="""
+OH!! \"Much ado about nothing\". As [Joey reported in datalad issues](https://github.com/datalad/datalad/issues/3361#issuecomment-488018126) there is now handling of `mimeencoding=binary` as the ultimate decision maker.  So we are probably doomed (unless Joey sees reason in the reasoning above and implements that as well) to do go through all datasets and autoadjust them to use `mimeencoding` instead of `mimetype`.
+"""]]

doc/bugs/be_robust_to_additions_of_more_specific_mime_types_to_libmagic___40__e.g._application__47__json__41__/comment_2_08448687578634b6281ea285f18d87e7._comment

@@ -0,0 +1,23 @@
+[[!comment format=mdwn
+ username="joey"
+ subject="""comment 2"""
+ date="2019-12-20T20:00:14Z"
+ content="""
+Yes, mimeencoding=binary is intended for those cases where you just want a
+robust (presumably) text/binary division.
+
+The "any mimetype matches" approach seems like it could break things too.
+Consider:
+
+	(not mimetype=text/plain and (mimetype=text/* or mimetype=application/json)) or mimetype=AI/buggy
+
+Currently a shell script is found to be only text/x-shellscript,
+so it would match the above. If git-annex were changed to consider
+all reported mime types, the shell script, being also text/plain
+would not match.
+
+And then, once the mime database solves the halting problem and helpfully
+starts flagging shell scripts as AI/buggy (all shell scripts are presumably
+buggy so maybe that AI has an easy job), the behavior on the above example
+would change for a third time, back to matching.
+"""]]

doc/bugs/creating_dot-git-as-symlink_workaround_drops_worktree_configuration_from_submodules.mdwn

@@ -0,0 +1,58 @@
+### Please describe the problem.
+
+When using [[submodules]], a `git annex init` in the submodule drops the `core.workdir` configuration from the git config around the time it replaces the plain `.git` file with a symlink.
+
+The lack of that option rarely affects anything (the command-line git or -annex operations I've tried from inside the workdir went OK), but when libgit2 is used to load the submodule and discover its workdir, the missing option becomes apparent, and libgit2 reports an incorrect working directory.
+
+### What steps will reproduce the problem?
+
+As this is about a comparatively comprehensive setup, I've phrased it as a shell script:
+
+[[!format sh """
+git init inner-original
+cd inner-original
+touch inner-file
+git add inner-file
+git commit -m "initial inner check-in"
+cd ..
+
+git init outer
+cd outer
+git submodule add ../inner-original inner
+cd ..
+
+cp -a outer outer-with-annex
+cp -a outer outer-with-ln
+
+cd outer-with-annex/inner
+git annex init
+cd ../..
+cd outer-with-ln/inner
+ln -sf ../.git/modules/inner .git
+cd ../..
+"""]]
+
+Now apparently, all those inner directories still work (eg. `git diff inner-file`).
+However, `git config core.worktree` only reports on those that `git annex` did not touch.
+
+The practical problem arising with this can most easily seen when executing the following Python snippet in any of the outer directories:
+
+[[!format python """
+import pygit2
+r = pygit2.Repository(".")
+r2 = r.lookup_submodule("inner").open()
+print (r.workdir, r2.workdir)
+"""]]
+
+which reports the workdir of the outer correctly, but reports `$PATH/outer-with-annex/.git/modules/` (which is definitely not a workdir) for the annex.
+
+When the option is restored, libgit2's discovery works, but git-annex stops working with "git-annex: /tmp/inner: changeWorkingDirectory: does not exist (No such file or directory)" -- apparently, git-annex does use the workdir if it is set, but uses different resolution rules than git.
+
+### What version of git-annex are you using? On what operating system?
+
+git-annex 7.20191114 as packaged in Debian as 7.20191114-1.
+
+
+### Have you had any luck using git-annex before?
+
+Luck had nothing to do with it -- it's by its design that it usually works :-)

doc/bugs/creating_dot-git-as-symlink_workaround_drops_worktree_configuration_from_submodules/comment_1_ca12be107b7a7dc36cb71595e347ce28._comment

@@ -0,0 +1,15 @@
+[[!comment format=mdwn
+ username="https://christian.amsuess.com/chrysn"
+ nickname="chrysn"
+ avatar="http://christian.amsuess.com/avatar/c6c0d57d63ac88f3541522c4b21198c3c7169a665a2f2d733b4f78670322ffdc"
+ subject="Workaround"
+ date="2019-12-22T10:50:32Z"
+ content="""
+As a workaround to keep both git submodule workdir discovery and git annex functional, the original git submodule core.worktree parameter can be restored, and overridden for git-annex calls using
+
+[[!format sh \"\"\"
+GIT_WORK_TREE=\"$PWD\" git annex whereis
+\"\"\"]]
+
+and similar.
+"""]]

doc/git-annex-config.mdwn

@@ -27,6 +27,29 @@ repository see the setting, and so git-annex only looks for these:
 These settings can be overridden on a per-repository basis using
 `git config`.
 
+* `annex.largefiles`
+
+   Used to configure which files are large enough to be added to the annex.
+   It is an expression that matches the large files, eg
+   "include=*.mp3 or largerthan(500kb)".
+   See [[git-annex-matching-expression]](1) for details on the syntax.
+
+   This sets a default, which can be overridden by annex.largefiles
+   attributes in `.gitattributes` files, or by `git config`.
+
+* `annex.addunlocked`
+
+   Commands like `git-annex add` default to adding files to the repository
+   in locked form. This can make them add the files in unlocked form,
+   the same as if [[git-annex-unlock]](1) were run on the files.
+ 
+   This can be set to "true" to add everything unlocked, or it can be a more
+   complicated expression that matches files by name, size, or content. See
+   [[git-annex-matching-expression]](1) for details.
+
+   This sets a default, which can be overridden by annex.addunlocked
+   in `git config`.
+
 * `annex.autocommit`
 
   Set to false to prevent the `git-annex assistant` and `git-annex sync`

doc/git-annex-matchexpression.mdwn

@@ -59,6 +59,8 @@ For example, this will exit 0:
 
 [[git-annex-preferred-content]](1)
 
+[[git-annex-matching-expression]](1)
+
 # AUTHOR
 
 Joey Hess <id@joeyh.name>

doc/git-annex-matching-expression.mdwn

@@ -0,0 +1,87 @@
+# NAME
+
+git-annex-matching-expression - specifying a set of files
+
+# DESCRIPTION
+
+The annex.largefiles and annex.addunlocked configurations both use
+expressions that match some files in the working tree.
+
+# SYNTAX
+
+The format of these expressions is similar to
+[[git-annex-preferred-content]](1) expressions.
+
+For example:
+
+	largerthan=100kb and not (include=*.c or include=*.h)
+
+This matches large files, but excludes C source files.
+
+The following terms can be used:
+
+* `include=glob` / `exclude=glob`
+
+  Specify files to include or exclude.
+
+  The glob can contain `*` and `?` to match arbitrary characters.
+
+* `smallerthan=size` / `largerthan=size`
+
+  Matches only files smaller than, or larger than the specified size.
+
+  The size can be specified with any commonly used units, for example,
+  "0.5 gb" or "100 KiloBytes"
+
+* `mimetype=glob`
+
+  Looks up the MIME type of a file, and checks if the glob matches it.
+
+  For example, `"mimetype=text/*"` will match many varieties of text files,
+  including "text/plain", but also "text/x-shellscript", "text/x-makefile",
+  etc.
+
+  The MIME types are the same that are displayed by running `file --mime-type`
+
+  This is only available to use when git-annex was built with the
+  MagicMime build flag.
+
+* `mimeencoding=glob`
+
+  Looks up the MIME encoding of a file, and checks if the glob matches it.
+
+  For example, `"mimeencoding=binary"` will match many kinds of binary
+  files.
+
+  The MIME encodings are the same that are displayed by running `file --mime-encoding`
+
+  This is only available to use when git-annex was built with the
+  MagicMime build flag.
+
+* `anything`
+
+  Matches any file.
+
+* `nothing`
+
+  Matches no files. (Same as "not anything")
+
+* `not expression`
+
+  Inverts what the expression matches.
+
+* `and` / `or` / `( expression )`
+
+  These can be used to build up more complicated expressions.
+
+# SEE ALSO
+
+[[git-annex]](1)
+
+# AUTHOR
+
+Joey Hess <id@joeyh.name>
+
+<http://git-annex.branchable.com/>
+
+Warning: Automatically converted into a man page by mdwn2man. Edit with care.

doc/git-annex.mdwn

@@ -891,10 +891,14 @@ Like other git commands, git-annex is configured via `.git/config`.
 
   Used to configure which files are large enough to be added to the annex.
   It is an expression that matches the large files, eg
-  "*.mp3 or largerthan(500kb)"
+  "include=*.mp3 or largerthan(500kb)"
+  See [[git-annex-matching-expression]](1) for details on the syntax.
 
   Overrides any annex.largefiles attributes in `.gitattributes` files.
   
+  To configure a default annex.largefiles for all clones of the repository,
+  this can be set in [[git-annex-config]](1).
+
   This configures the behavior of both git-annex and git when adding
   files to the repository. By default, `git-annex add` adds all files
   to the annex, and `git add` adds files to git (unless they were added
@@ -906,13 +910,10 @@ Like other git commands, git-annex is configured via `.git/config`.
   `git annex import`, `git annex addurl`, `git annex importfeed`
   and the assistant.
 
-  See <https://git-annex.branchable.com/tips/largefiles> for syntax
-  documentation and more.
-
 * `annex.gitaddtoannex`
 
-  Setting this to false will prevent `git add` from honoring the 
+  Setting this to false will prevent `git add` from adding
-  annex.largefiles configuration.
+  files to the annex, despite the annex.largefiles configuration.
 
 * `annex.addsmallfiles`
 
@@ -922,15 +923,23 @@ Like other git commands, git-annex is configured via `.git/config`.
 
 * `annex.addunlocked`
 
-  Set to true to make commands like `git-annex add` that add files to the
+  Commands like `git-annex add` default to adding files to the repository
-  repository add them in unlocked form. The default is for these commands
+  in locked form. This can make them add the files in unlocked form,
-  to add files in locked form. 
+  the same as if [[git-annex-unlock]](1) were run on the files.
+
+  This can be set to "true" to add everything unlocked, or it can be a more
+  complicated expression that matches files by name, size, or content. See
+  [[git-annex-matching-expression]](1) for details.
+  
+  To configure a default annex.addunlocked for all clones of the repository,
+  this can be set in [[git-annex-config]](1).
   
   (Using `git add` always adds files in unlocked form and it is not
   affected by this setting.)
   
-  When a repository has core.symlinks set to false, it implicitly
+  When a repository has core.symlinks set to false, or has an adjusted 
-  sets annex.addunlocked to true.
+  unlocked branch checked out, this setting is ignored, and files are 
+  always added to the repository in unlocked form.
 
 * `annex.numcopies`
 
@@ -1695,9 +1704,11 @@ but the SHA256E backend for ogg files:
 	*.ogg annex.backend=SHA256E
 
 There is a annex.largefiles attribute, which is used to configure which
-files are large enough to be added to the annex.
+files are large enough to be added to the annex. Since attributes cannot
-See the documentation above of the annex.largefiles git config
+contain spaces, it is difficult to use for more complex annex.largefiles
-and <https://git-annex.branchable.com/tips/largefiles> for details.
+settings. Setting annex.largefiles in [[git-annex-config]](1) is an easier
+way to configure it across all clones of the repository.
+See [[git-annex-matching-expression]](1) for details on the syntax.
 
 The numcopies setting can also be configured on a per-file-type basis via
 the `annex.numcopies` attribute in `.gitattributes` files. This overrides

doc/install/Windows/comment_8_35c66016c971a623ec86318adf7923b4._comment

@@ -0,0 +1,11 @@
+[[!comment format=mdwn
+ username="michael.fsp@85f5ea833fb457cf7b0b0181c314888d5f32649c"
+ nickname="michael.fsp"
+ avatar="http://cdn.libravatar.org/avatar/f398e1ea7eed60be1d45caa3126fc691"
+ subject="windows installer has not been updated to version 7.20191218"
+ date="2019-12-21T18:17:19Z"
+ content="""
+Just to let you know that the windows installer is still at version 7.20191115
+
+Thanks for the awesome work!
+"""]]

doc/tips/largefiles.mdwn

@@ -26,101 +26,63 @@ the assistant.
 For example, let's make only files larger than 100 kb be added to the annex,
 and never `*.c` and `*.h` source code files.
 
-Write this to the `.gitattributes` file:
+	git config annex.largefiles 'largerthan=100kb and not (include=*.c or include=*.h)'
 
-	* annex.largefiles=(largerthan=100kb)
+That is a local configuration, so will only apply to your clone of the
+repository. To set a default that will apply to all clones, unless
+overridden, do this instead:
+
+	git annex config --set annex.largefiles 'largerthan=100kb and not (include=*.c or include=*.h)'
+
+There's one other way to configure the same thing, you can put this in
+the `.gitattributes` file:
+
+	* annex.largefiles=largerthan=100kb
 	*.c annex.largefiles=nothing
 	*.h annex.largefiles=nothing
 
-Or, set the git configuration instead:
+The syntax in .gitattributes is a bit different, because the .gitattributes
+matches files itself, and the values of attributes cannot contain spaces.
+So using .gitattributes for this is not recommended (but it does work for
+older versions of git-annex, where the `git annex config` setting does
+not). Any .gitattributes setting overrides the `git annex config` setting,
+but will be overridden by the `git config` setting.
 
-	git config annex.largefiles 'largerthan=100kb and not (include=*.c or include=*.h)'
+Another example. If you wanted `git add` to put all files the annex
-
+in your local repository:
-Both of these settings do the same thing. Setting it in the
-`.gitattributes` file makes any checkout of the repository share that
-configuration, so is often a good choice. Setting the annex.largefiles git
-configuration lets different checkouts behave differently. The git
-configuration overrides the `.gitattributes` configuration.
-
-Or, perhaps you just want all files to be added to the annex, no matter
-what. Just write "* annex.largefiles=anything" to the `.gitattributes`
-file, or run:
 
 	git config annex.largefiles anything
 
+Or in all clones:
+
+	git annex config --set annex.largefiles anything
+
 ## syntax
 
-The value of annex.largefiles is similar to a
+See [[git-annex-matching-expression]] for details about the syntax.
-[[preferred content expression|git-annex-preferred-content]].
-The following terms can be used in annex.largefiles:
 
-* `include=glob` / `exclude=glob`
+## gitattributes format
 
-  Specify files to include or exclude.
+Here's that example `.gitattributes` again:
 
-  The glob can contain `*` and `?` to match arbitrary characters.
+	* annex.largefiles=largerthan=100kb
+	*.c annex.largefiles=nothing
+	*.h annex.largefiles=nothing
 
-* `smallerthan=size` / `largerthan=size`
+The way that works is, `*.c` and `*.h` files have the annex.largefiles
+attribute set to "nothing", and so those files are never treated as large
+files. All other files use the other value, which checks the file size.
 
-  Matches only files smaller than, or larger than the specified size.
+Since git attribute values cannot contain whitespace, when you need
-
+a more complicated annex.largefiles expression, you can instead
-  The size can be specified with any commonly used units, for example,
+parenthesize the terms of the annex.largefiles attribute.
-  "0.5 gb" or "100 KiloBytes"
-
-* `mimetype=glob`
-
-  Looks up the MIME type of a file, and checks if the glob matches it.
-
-  For example, `"mimetype=text/*"` will match many varieties of text files,
-  including "text/plain", but also "text/x-shellscript", "text/x-makefile",
-  etc.
-
-  The MIME types are the same that are displayed by running `file --mime-type`
-
-  This is only available to use when git-annex was built with the
-  MagicMime build flag.
-
-* `mimeencoding=glob`
-
-  Looks up the MIME encoding of a file, and checks if the glob matches it.
-
-  For example, `"mimeencoding=binary"` will match many kinds of binary
-  files.
-
-  The MIME encodings are the same that are displayed by running `file --mime-encoding`
-
-  This is only available to use when git-annex was built with the
-  MagicMime build flag.
-
-* `anything`
-
-  Matches any file.
-
-* `nothing`
-
-  Matches no files. (Same as "not anything")
-
-* `not expression`
-
-  Inverts what the expression matches.
-
-* `and` / `or` / `( expression )`
-
-  These can be used to build up more complicated expressions.
-
-The way the `.gitattributes` example above works is, `*.c` and `*.h` files
-have the annex.largefiles attribute set to "nothing",
-and so those files are never treated as large files. All other files use
-the other value, which checks the file size.
-
-Note that, since git attribute values cannot contain whitespace,
-it's useful to instead parenthesize the terms of the annex.largefiles
-attribute. This trick allows for more complicated expressions.
 For example, this is the same as the git config shown earlier, shoehorned
-into a git attribute:
+into a single git attribute:
 
 	* annex.largefiles=(largerthan=100kb)and(not((include=*.c)or(include=*.h)))
 
+It's generally a better idea to use `git annex config` instead.
+
 ## temporarily override
 
 If you've set up an annex.largefiles configuration but want to force a file to

doc/todo/addunlocked_config_setting.mdwn

@@ -3,3 +3,5 @@ Can the `annex.addunlocked` be extended to have the same syntax as `annex.largef
 Basically, I want a reliable way to prevent inadvertently adding files as annexed unlocked files.
 
 Related: [[forum/lets_discuss_git_add_behavior]]
+
+> [[done]] --[[Joey]]

doc/todo/addunlocked_config_setting/comment_4_e9c9552c4f558ada76fe1e3eecfa1627._comment

@@ -0,0 +1,11 @@
+[[!comment format=mdwn
+ username="joey"
+ subject="""comment 4"""
+ date="2019-12-20T19:45:21Z"
+ content="""
+Made annex.addunlocked support expressions like annex.largefiles.
+
+And both of them can be set globally with `git annex config`. I did not
+make annex.addunlocked be settable by git attribute, because my sense is
+that `git annex config` covers that use case, or mostly so.
+"""]]

doc/todo/git-annex-reinject_--known_should_not_fail_when_the_file_extension_is_different.mdwn

@@ -0,0 +1,7 @@
+I noticed that with the default SHA256E backend, `git annex reinject --known FILE` will fail if FILE has a different extension than it has in the annex.  Presumably this is because `git annex calckey FILE` does not generate the same key, even though the file has the same checksum.
+
+I think it would be better if `git annex reinject --known` would ignore the file extension when deciding whether a file is known.  A case where that would be much better is caused by the fact that git-annex has changed how it determines a file's extension over time.  E.g. if foo.bar.baz was added to the annex a long time ago, it might have a key like `SHA256E-s12--37833383383.baz`.  Modern git-annex would calculate a key like `SHA256E-s12--37833383383.bar.baz` and so the reinject of the file using modern git-annex would fail.
+
+This problem does not affect `git annex reinject` without `--known`.
+
+--spwhitton

doc/todo/git-annex-reinject_does_not_work_in_a_bare_repo.mdwn

@@ -0,0 +1,28 @@
+`git annex reinject --known` doesn't work in a bare repo.
+
+    spwhitton@iris:~/tmp>echo foo >bar
+    spwhitton@iris:~/tmp>mkdir baz
+    spwhitton@iris:~/tmp>cd baz
+    spwhitton@iris:~/tmp/baz>git init --bare
+    Initialized empty Git repository in /home/spwhitton/tmp/baz/
+    spwhitton@iris:~/tmp/baz>git annex init
+    init  (scanning for unlocked files...)
+    ok
+    (recording state in git...)
+    spwhitton@iris:~/tmp/baz>git annex reinject --known ../bar
+    fatal: relative path syntax can't be used outside working tree.
+    fatal: relative path syntax can't be used outside working tree.
+    fatal: relative path syntax can't be used outside working tree.
+    fatal: relative path syntax can't be used outside working tree.
+    fatal: relative path syntax can't be used outside working tree.
+    fatal: relative path syntax can't be used outside working tree.
+    fatal: relative path syntax can't be used outside working tree.
+    fatal: relative path syntax can't be used outside working tree.
+    fatal: relative path syntax can't be used outside working tree.
+    fatal: relative path syntax can't be used outside working tree.
+    fatal: relative path syntax can't be used outside working tree.
+    git-annex: fd:15: hGetLine: end of file
+
+Obviously this wasn't actually a file known to git-annex.  But I get the same error in a non-dummy bare repo I am trying to reinject.
+
+A workaround is to use `git worktree add` and run `git annex reinject` from there.

doc/todo/making_it_easier_to_smudge_dotfiles/comment_3_10e03e3c90370e83f6f0999f3cd3a89f._comment

@@ -0,0 +1,17 @@
+[[!comment format=mdwn
+ username="joey"
+ subject="""comment 3"""
+ date="2019-12-19T20:37:18Z"
+ content="""
+How about annex.dotfiles=true enables annexing dotfiles, but only
+if annex.largefiles is set to something. Leave it up
+to the user to configure annex.largefiles according to their use case.
+And if the user neglects to annex.largefiles, this avoids blowing their foot
+off by default.
+
+annex.dotfiles could certainly go in the global `git-annex config`;
+annex.largefiles would then make sense to be set in .gitattributes,
+or also add support for storing in in `git-annex config` (which avoids
+the syntatic hacks needed to shoehorn it into .gitattributes, and makes it
+be repo-global the same as the annex.dotfiles config).
+"""]]

doc/todo/making_it_easier_to_smudge_dotfiles/comment_4_82fe6d1e4a71cdb6c283a21e52f96f88._comment

@@ -0,0 +1,8 @@
+[[!comment format=mdwn
+ username="spwhitton"
+ avatar="http://cdn.libravatar.org/avatar/9c3f08f80e67733fd506c353239569eb"
+ subject="comment 4"
+ date="2019-12-21T23:03:46Z"
+ content="""
+Hmm, what would the default value of `annex.dotfiles` be?  If the default is false (so that there is no behavioural change unless the user explicitly requests it), then why not have it take effect even if annex.largefiles has not been set?
+"""]]