git-annex/standalone/linux/skel/runshell

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#!/bin/sh
# Runs a shell command (or interactive shell) using the binaries and
# libraries bundled with this app.
# Set this variable when using this script inside a package of git-annex,
# which arranges for git-annex, git-annex-shell, and git to all be in the
# standard PATH. This also makes the system locales be used.
GIT_ANNEX_PACKAGE_INSTALL=
set -e
orig_IFS="${IFS}"
unset IFS
os="$(uname -o 2>/dev/null || true)"
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base="$(dirname "$0")"
if [ ! -d "$base" ]; then
echo "** cannot find base directory (I seem to be $0)" >&2
exit 1
fi
if [ ! -e "$base/bin/git-annex" ]; then
echo "** base directory $base does not contain bin/git-annex" >&2
exit 1
fi
# Get absolute path to base, to avoid breakage when things change directories.
orig="$(pwd)"
cd "$base"
base="$(pwd)"
cd "$orig"
# --library-path won't work if $base contains : or ;
# Detect this problem, and work around it by using a temp directory.
if echo "$base" | grep -q '[:;]'; then
tbase=$(mktemp -d -p /tmp annexshimXXXXXXXXX 2>/dev/null || true)
if [ -z "$tbase" ]; then
tbase="/tmp/annexshim.$$"
mkdir "$tbase"
fi
ln -s "$base" "$tbase/link"
base="$tbase/link"
cleanuptbase () {
rm -rf "$tbase"
}
trap cleanuptbase EXIT
else
tbase=""
fi
if [ -z "$GIT_ANNEX_PACKAGE_INSTALL" ]; then
# Install shim that's used to run git-annex-shell from ssh authorized
# keys. The assistant also does this when run, but the user may not
# be using the assistant.
if [ ! -e "$HOME/.ssh/git-annex-shell" ]; then
mkdir "$HOME/.ssh" >/dev/null 2>&1 || true
if [ -e "$HOME/.ssh" ]; then
(
echo "#!/bin/sh"
echo "set -e"
echo "if [ \"x\$SSH_ORIGINAL_COMMAND\" != \"x\" ]; then"
echo "exec '$base/runshell' git-annex-shell -c \"\$SSH_ORIGINAL_COMMAND\""
echo "else"
echo "exec '$base/runshell' git-annex-shell -c \"\$@\""
echo "fi"
) > "$HOME/.ssh/git-annex-shell.$$"
chmod +x "$HOME/.ssh/git-annex-shell.$$"
mv -f "$HOME/.ssh/git-annex-shell.$$" "$HOME/.ssh/git-annex-shell"
fi
fi
# And this shim is used by the webapp when adding a remote ssh server.
if [ ! -e "$HOME/.ssh/git-annex-wrapper" ]; then
mkdir "$HOME/.ssh" >/dev/null 2>&1 || true
if [ -e "$HOME/.ssh" ]; then
(
echo "#!/bin/sh"
echo "set -e"
echo "exec '$base/runshell' \"\$@\""
) > "$HOME/.ssh/git-annex-wrapper.$$"
chmod +x "$HOME/.ssh/git-annex-wrapper.$$"
mv -f "$HOME/.ssh/git-annex-wrapper.$$" "$HOME/.ssh/git-annex-wrapper"
fi
fi
fi
# Used by git-annex assistant to further install itself.
GIT_ANNEX_APP_BASE="$base"
export GIT_ANNEX_APP_BASE
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# Put our binaries first, to avoid issues with out of date or incompatible
# system binaries. Extra binaries come after system path.
ORIG_PATH="$PATH"
export ORIG_PATH
PATH="$base/bin:$PATH:$base/extra"
export PATH
# These env vars are used by the shim wrapper around each binary.
for lib in $(cat "$base/libdirs"); do
GIT_ANNEX_LD_LIBRARY_PATH="$base/$lib:$GIT_ANNEX_LD_LIBRARY_PATH"
done
export GIT_ANNEX_LD_LIBRARY_PATH
GIT_ANNEX_DIR="$base"
export GIT_ANNEX_DIR
ORIG_GCONV_PATH="$GCONV_PATH"
export ORIG_GCONV_PATH
GCONV_PATH="$base/$(cat "$base/gconvdir")"
export GCONV_PATH
ORIG_GIT_EXEC_PATH="$GIT_EXEC_PATH"
export ORIG_GIT_EXEC_PATH
GIT_EXEC_PATH="$base/git-core"
export GIT_EXEC_PATH
ORIG_GIT_TEMPLATE_DIR="$GIT_TEMPLATE_DIR"
export ORIG_GIT_TEMPLATE_DIR
GIT_TEMPLATE_DIR="$base/templates"
export GIT_TEMPLATE_DIR
ORIG_MANPATH="$MANPATH"
export ORIG_MANPATH
MANPATH="$base/usr/share/man:$MANPATH"
export MANPATH
# LD_PRELOAD may interact badly with the bundled libc and other libraries,
# which may have a different subarchitecture than the preloaded library.
unset LD_PRELOAD
# Avoid using system locales, which may interact badly with bundled libc.
# (But if LOCPATH is set, don't override it.
ORIG_LOCPATH="$LOCPATH"
export ORIG_LOCPATH
runshell: Use system locales when built with GIT_ANNEX_PACKAGE_INSTALL set This is to work around https://github.com/datalad/datalad/issues/2769 which I don't know how to reproduce outside that environment, nor do I understand the root cause of. For some time, Neurodebian has been working around it by building its standalone debs with a patch that disables use of the locales bundled with the standalone build, letting the system locales be used. Using the system locales is asking for trouble if there's significant version skew between the system and bundled glibc, and possibly also if the architeciture is different, or whatever. That's why git-annex bundles and uses its own locales, because numerous users reported real problems with using the system locales. ... However, in the specific case of the Neurodebian standalone debs, the deb is built on a system very like the one it's targeted to be installed on. Or well, so they assure me, although doc/install/Ubuntu.mdwn also promotes those for use across all versions of Ubuntu, and the deb is built avoiding xz so it will work with old versions of dpkg, so I wonder how true it is. It does seem that, at least currently, there is no bad version skew in the locales of the systems the deb is used on, since it's already been using the system locales for some time. Anyway, since the Neurodebian build already is setting GIT_ANNEX_PACKAGE_INSTALL=1 in runshell, I made runshell use system locales when that's set. This is a small scope creep for GIT_ANNEX_PACKAGE_INSTALL, but it's not documented and AFAIK only used for the Neurodebian build, so that seems ok. This will let them stop carrying their patch for this forward. This work is supported by the NIH-funded NICEMAN (ReproNim TR&D3) project.
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if [ -z "${LOCPATH+set}" ] && [ -z "$GIT_ANNEX_PACKAGE_INSTALL" ]; then
LOCPATH="$HOME/.cache/git-annex/locales/$(cat "$base/buildid")_$(echo "$base" | tr / _ )"
# try to generate a short version, if md5sum is available
locpathmd5=$( (echo "$LOCPATH" | md5sum | cut -d ' ' -f 1 2>/dev/null) || true)
if [ -n "$locpathmd5" ]; then
LOCPATH="$HOME/.cache/git-annex/locales/$locpathmd5"
fi
export LOCPATH
# Clean up locale caches when their standalone bundle no longer exists.
for localecache in $HOME/.cache/git-annex/locales/*; do
cachebase=$(cat "$localecache/base" 2>/dev/null || true)
if [ ! -d "$cachebase" ] || ! cmp "$localecache/buildid" "$cachebase/buildid" >/dev/null 2>&1 ; then
rm -rf "$localecache" >/dev/null 2>&1 || true
fi
done
if [ ! -d "$LOCPATH" ]; then
if ! mkdir -p "$LOCPATH"; then
echo "Unable to write to $LOCPATH; can't continue!" >&2
exit 1
fi
fi
if [ ! -e "$LOCPATH/base" ]; then
echo "$base" > "$LOCPATH/base.$$"
mv -f "$LOCPATH/base.$$" "$LOCPATH/base"
fi
# Not using cp to avoid using the one bundled with git-annex
# before the environment is set up to run it.
if [ ! -e "$LOCPATH/buildid" ]; then
cat < "$base/buildid" > "$LOCPATH/buildid.$$"
mv -f "$LOCPATH/buildid.$$" "$LOCPATH/buildid"
fi
# Generate locale definition files for the locales in use,
# using the localedef and locale files from the bundle.
# Currently only utf-8 locales are handled.
lastlocaleenv=""
for localeenv in "$LANG" "$LANGUAGE" "$LC_CTYPE" "$LC_NUMERIC" "$LC_TIME" \
"$LC_COLLATE" "$LC_MONETARY" "$LC_MESSAGES" "$LC_PAPER" \
"$LC_NAME" "$LC_ADDRESS" "$LC_TELEPHONE" "$LC_MEASUREMENT" \
"$LC_IDENTIFICATION" "$LC_ALL"; do
if [ -n "$localeenv" ] && [ "$localeenv" != "$lastlocaleenv" ]; then
lastlocaleenv="$localeenv"
if [ ! -d "$LOCPATH/$localeenv" ]; then
if [ "${localeenv##[!.]*.}" = "utf8" ] || [ "${localeenv##[!.]*.}" = "UTF-8" ]; then
(
rm -rf "$LOCPATH/$localeenv.new.$$" &&
mkdir -p "$LOCPATH/$localeenv.new.$$" &&
# cd to $base since localedef reads files from pwd
cd "$base" &&
# Run localedef using the bundled i18n files;
# use LANG=C to avoid it reading the system locale archive.
I18NPATH="$base/i18n" LANG=C localedef -i "${localeenv%%.*}" -c -f UTF-8 "$LOCPATH/$localeenv.new.$$" &&
mv "$LOCPATH/$localeenv.new.$$" "$LOCPATH/$localeenv"
# In a race, LOCPATH may get created by another process,
# in which cache the mv above would put it here.
rm -rf "$LOCPATH/$localeenv/$localeenv.new.$$"
) >/dev/null 2>/dev/null || true
fi
fi
fi
done
fi
useproot=""
case "$os" in
# Make this bundle work well on Android.
Android)
if [ -e "$base/git" ]; then
echo "Running on Android.. Tuning for optimal behavior." >&2
# The bundled git does not work well on sdcard, so delete
# it and use termux's git which works better.
cd "$base"
find . | grep git | grep -v git-annex | grep -v git-remote-tor-annex | grep -v git-remote-gcrypt | xargs rm -rf
# Use termux's uname, which knows it's on android,
# not the bundled one.
rm -f bin/uname
# Fix shell scripts to work when run inside proot.
termux-fix-shebang bin/* runshell git-annex git-annex-shell git-annex-webapp
cd "$orig"
# Save the poor Android user the typing.
if echo "$SHELL" | grep -q '/bash'; then
if ! [ -e "$HOME/.profile" ] || ! grep -q "$base" "$HOME/.profile"; then
echo "Adding git-annex to PATH for you, in $HOME/.profile"
echo 'PATH=$PATH:'"$base" >> $HOME/.profile
fi
else
echo "To use git-annex, you will need to add $base to your shell's PATH."
fi
fi
# Work around Android 8's seccomp filtering of some crucial
# system calls, using termux's version of proot.
useproot=1
# Store ssh connection caching sockets outside of sdcard.
GIT_ANNEX_SSH_SOCKET_DIR="$TMPDIR"
export GIT_ANNEX_SSH_SOCKET_DIR
GIT_ANNEX_STANDLONE_ENV="PATH GCONV_PATH MANPATH LOCPATH"
export GIT_ANNEX_STANDLONE_ENV
;;
*)
# Indicate which variables were exported above and should be cleaned
# when running non-bundled programs.
GIT_ANNEX_STANDLONE_ENV="PATH GCONV_PATH GIT_EXEC_PATH GIT_TEMPLATE_DIR MANPATH LOCPATH"
export GIT_ANNEX_STANDLONE_ENV
;;
esac
if [ "$1" ]; then
cmd="$1"
shift 1
else
cmd=sh
fi
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LD_HWCAP_MASK=
export LD_HWCAP_MASK
if [ -n "${orig_IFS}" ]; then
IFS="${orig_IFS}"
export IFS
fi
if [ -z "$tbase" ]; then
if [ "$useproot" ]; then
exec proot "$cmd" "$@"
else
exec "$cmd" "$@"
fi
else
# allow EXIT trap to cleanup
if [ "$useproot" ]; then
proot "$cmd" "$@"
else
"$cmd" "$@"
fi
fi