git-annex/Command/Import.hs

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{- git-annex command
-
- Copyright 2012-2021 Joey Hess <id@joeyh.name>
-
- Licensed under the GNU AGPL version 3 or higher.
-}
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{-# LANGUAGE ApplicativeDo #-}
module Command.Import where
import Command
import qualified Git
import qualified Annex
import qualified Command.Add
import qualified Command.Reinject
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import qualified Types.Remote as Remote
import qualified Git.Ref
import Utility.CopyFile
import Utility.OptParse
import Backend
import Types.KeySource
import Annex.CheckIgnore
import Annex.NumCopies
import Annex.FileMatcher
import Annex.Ingest
import Annex.InodeSentinal
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import Annex.Import
import Annex.Perms
import Annex.RemoteTrackingBranch
import Utility.InodeCache
import Logs.Location
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import Git.FilePath
import Git.Types
import Types.Import
import Utility.Metered
import qualified Utility.RawFilePath as R
import Control.Concurrent.STM
cmd :: Command
cmd = notBareRepo $
withGlobalOptions opts $
command "import" SectionCommon
"add a tree of files to the repository"
(paramPaths ++ "|BRANCH")
(seek <$$> optParser)
where
opts =
[ jobsOption
, jsonOptions
, jsonProgressOption
-- These options are only used when importing from a
-- directory, not from a special remote. So it's ok
-- to use LimitDiskFiles.
, fileMatchingOptions LimitDiskFiles
]
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data ImportOptions
= LocalImportOptions
{ importFiles :: CmdParams
, duplicateMode :: DuplicateMode
, checkGitIgnoreOption :: CheckGitIgnore
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}
| RemoteImportOptions
{ importFromRemote :: DeferredParse Remote
, importToBranch :: Branch
, importToSubDir :: Maybe FilePath
, importContent :: Bool
, checkGitIgnoreOption :: CheckGitIgnore
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}
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optParser :: CmdParamsDesc -> Parser ImportOptions
optParser desc = do
ps <- cmdParams desc
mfromremote <- optional $ parseRemoteOption <$> parseFromOption
content <- invertableSwitch "content" True
( help "do not get contents of imported files"
)
dupmode <- fromMaybe Default <$> optional duplicateModeParser
ic <- Command.Add.checkGitIgnoreSwitch
return $ case mfromremote of
Nothing -> LocalImportOptions ps dupmode ic
Just r -> case ps of
[bs] ->
let (branch, subdir) = separate (== ':') bs
in RemoteImportOptions r
(Ref (encodeBS branch))
(if null subdir then Nothing else Just subdir)
content
ic
_ -> giveup "expected BRANCH[:SUBDIR]"
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data DuplicateMode = Default | Duplicate | DeDuplicate | CleanDuplicates | SkipDuplicates | ReinjectDuplicates
deriving (Eq)
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duplicateModeParser :: Parser DuplicateMode
duplicateModeParser =
flag' Duplicate
( long "duplicate"
<> help "do not delete source files"
)
<|> flag' DeDuplicate
( long "deduplicate"
<> help "delete source files whose content was imported before"
)
<|> flag' CleanDuplicates
( long "clean-duplicates"
<> help "delete duplicate source files (import nothing)"
)
<|> flag' SkipDuplicates
( long "skip-duplicates"
<> help "import only new files (do not delete source files)"
)
<|> flag' ReinjectDuplicates
( long "reinject-duplicates"
<> help "import new files, and reinject the content of files that were imported before"
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)
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seek :: ImportOptions -> CommandSeek
seek o@(LocalImportOptions {}) = startConcurrency commandStages $ do
repopath <- liftIO . absPath =<< fromRepo Git.repoPath
inrepops <- liftIO $ filter (dirContains repopath)
<$> mapM (absPath . toRawFilePath) (importFiles o)
unless (null inrepops) $ do
giveup $ "cannot import files from inside the working tree (use git annex add instead): " ++ unwords (map fromRawFilePath inrepops)
largematcher <- largeFilesMatcher
addunlockedmatcher <- addUnlockedMatcher
(commandAction . startLocal o addunlockedmatcher largematcher (duplicateMode o))
`withPathContents` importFiles o
seek o@(RemoteImportOptions {}) = startConcurrency commandStages $ do
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r <- getParsed (importFromRemote o)
unlessM (Remote.isImportSupported r) $
giveup "That remote does not support imports."
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subdir <- maybe
(pure Nothing)
(Just <$$> inRepo . toTopFilePath . toRawFilePath)
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(importToSubDir o)
seekRemote r (importToBranch o) subdir (importContent o) (checkGitIgnoreOption o)
startLocal :: ImportOptions -> AddUnlockedMatcher -> GetFileMatcher -> DuplicateMode -> (RawFilePath, RawFilePath) -> CommandStart
startLocal o addunlockedmatcher largematcher mode (srcfile, destfile) =
ifM (liftIO $ isRegularFile <$> R.getSymbolicLinkStatus srcfile)
( starting "import" ai si pickaction
, stop
)
where
ai = ActionItemTreeFile destfile
si = SeekInput []
deletedup k = do
showNote $ "duplicate of " ++ serializeKey k
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verifyExisting k destfile
( do
liftIO $ R.removeLink srcfile
next $ return True
, do
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warning "Could not verify that the content is still present in the annex; not removing from the import location."
stop
)
reinject k = do
showNote "reinjecting"
Command.Reinject.perform srcfile k
importfile ld k = checkdestdir $ do
ignored <- checkIgnored (checkGitIgnoreOption o) destfile
if ignored
then do
warning $ "not importing " ++ fromRawFilePath destfile ++ " which is .gitignored (use --no-check-gitignore to override)"
stop
else do
existing <- liftIO (catchMaybeIO $ R.getSymbolicLinkStatus destfile)
case existing of
Nothing -> importfilechecked ld k
Just s
| isDirectory s -> notoverwriting "(is a directory)"
| isSymbolicLink s -> ifM (Annex.getState Annex.force)
( do
liftIO $ removeWhenExistsWith R.removeLink destfile
importfilechecked ld k
, notoverwriting "(is a symlink)"
)
| otherwise -> ifM (Annex.getState Annex.force)
( do
liftIO $ removeWhenExistsWith R.removeLink destfile
importfilechecked ld k
, notoverwriting "(use --force to override, or a duplication option such as --deduplicate to clean up)"
)
checkdestdir cont = do
let destdir = parentDir destfile
existing <- liftIO (catchMaybeIO $ R.getSymbolicLinkStatus destdir)
case existing of
Nothing -> cont
Just s
| isDirectory s -> cont
| otherwise -> do
warning $ "not importing " ++ fromRawFilePath destfile ++ " because " ++ fromRawFilePath destdir ++ " is not a directory"
stop
importfilechecked ld k = do
-- Move or copy the src file to the dest file.
-- The dest file is what will be ingested.
createWorkTreeDirectory (parentDir destfile)
unwind <- liftIO $ if mode == Duplicate || mode == SkipDuplicates
then do
void $ copyFileExternal CopyAllMetaData
(fromRawFilePath srcfile)
(fromRawFilePath destfile)
return $ removeWhenExistsWith R.removeLink destfile
else do
moveFile
(fromRawFilePath srcfile)
(fromRawFilePath destfile)
return $ moveFile
(fromRawFilePath destfile)
(fromRawFilePath srcfile)
-- Make sure that the dest file has its write permissions
-- removed; the src file normally already did, but may
-- have imported it from a filesystem that does not allow
-- removing write permissions, to a repo on a filesystem
-- that does.
when (lockingFile (lockDownConfig ld)) $ do
freezeContent destfile
checkLockedDownWritePerms destfile srcfile >>= \case
Just err -> do
liftIO unwind
giveup err
Nothing -> noop
-- Get the inode cache of the dest file. It should be
-- weakly the same as the originally locked down file's
-- inode cache. (Since the file may have been copied,
-- its inodes may not be the same.)
newcache <- withTSDelta $ liftIO . genInodeCache destfile
let unchanged = case (newcache, inodeCache (keySource ld)) of
(_, Nothing) -> True
(Just newc, Just c) | compareWeak c newc -> True
_ -> False
unless unchanged $
giveup "changed while it was being added"
-- The LockedDown needs to be adjusted, since the destfile
-- is what will be ingested.
let ld' = ld
{ keySource = KeySource
{ keyFilename = destfile
, contentLocation = destfile
, inodeCache = newcache
}
}
ifM (checkFileMatcher largematcher destfile)
( ingestAdd' (checkGitIgnoreOption o) nullMeterUpdate (Just ld') (Just k)
>>= maybe
stop
(\addedk -> next $ Command.Add.cleanup addedk True)
, next $ Command.Add.addSmall (checkGitIgnoreOption o) destfile
)
notoverwriting why = do
warning $ "not overwriting existing " ++ fromRawFilePath destfile ++ " " ++ why
stop
lockdown a = do
let mi = MatchingFile $ FileInfo
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{ contentFile = srcfile
, matchFile = destfile
, matchKey = Nothing
}
lockingfile <- not <$> addUnlocked addunlockedmatcher mi True
-- Minimal lock down with no hard linking so nothing
-- has to be done to clean up from it.
let cfg = LockDownConfig
{ lockingFile = lockingfile
, hardlinkFileTmpDir = Nothing
-- The write perms of the file may not be able to be
-- removed, if it's being imported from a crippled
-- filesystem. So lockDown is asked to not check
-- the write perms. They will be checked later, after
-- the file gets copied into the repository.
, checkWritePerms = False
}
v <- lockDown cfg (fromRawFilePath srcfile)
case v of
Just ld -> do
backend <- chooseBackend destfile
k <- fst <$> genKey (keySource ld) nullMeterUpdate backend
a (ld, k)
Nothing -> stop
checkdup k dupa notdupa = ifM (isKnownKey k)
( dupa
, notdupa
)
pickaction = lockdown $ \(ld, k) -> case mode of
DeDuplicate -> checkdup k (deletedup k) (importfile ld k)
CleanDuplicates -> checkdup k
(deletedup k)
(skipbecause "not duplicate")
SkipDuplicates -> checkdup k
(skipbecause "duplicate")
(importfile ld k)
ReinjectDuplicates -> checkdup k
(reinject k)
(importfile ld k)
_ -> importfile ld k
skipbecause s = showNote (s ++ "; skipping") >> next (return True)
verifyExisting :: Key -> RawFilePath -> (CommandPerform, CommandPerform) -> CommandPerform
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verifyExisting key destfile (yes, no) = do
-- Look up the numcopies setting for the file that it would be
-- imported to, if it were imported.
(needcopies, mincopies) <- getFileNumMinCopies destfile
(tocheck, preverified) <- verifiableCopies key []
verifyEnoughCopiesToDrop [] key Nothing needcopies mincopies [] preverified tocheck
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(const yes) no
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seekRemote :: Remote -> Branch -> Maybe TopFilePath -> Bool -> CheckGitIgnore -> CommandSeek
seekRemote remote branch msubdir importcontent ci = do
importtreeconfig <- case msubdir of
Nothing -> return ImportTree
Just subdir ->
let mk tree = pure $ ImportSubTree subdir tree
in fromtrackingbranch Git.Ref.tree >>= \case
Just tree -> mk tree
Nothing -> inRepo (Git.Ref.tree branch) >>= \case
Just tree -> mk tree
Nothing -> giveup $ "Unable to find base tree for branch " ++ fromRef branch
trackingcommit <- fromtrackingbranch Git.Ref.sha
cmode <- annexCommitMode <$> Annex.getGitConfig
let importcommitconfig = ImportCommitConfig trackingcommit cmode importmessage
let commitimport = commitRemote remote branch tb trackingcommit importtreeconfig importcommitconfig
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importabletvar <- liftIO $ newTVarIO Nothing
void $ includeCommandAction (listContents remote importtreeconfig ci importabletvar)
liftIO (atomically (readTVar importabletvar)) >>= \case
Nothing -> return ()
add thirdPartyPopulated interface This is to support, eg a borg repo as a special remote, which is populated not by running git-annex commands, but by using borg. Then git-annex sync lists the content of the remote, learns which files are annex objects, and treats those as present in the remote. So, most of the import machinery is reused, to a new purpose. While normally importtree maintains a remote tracking branch, this does not, because the files stored in the remote are annex object files, not user-visible filenames. But, internally, a git tree is still generated, of the files on the remote that are annex objects. This tree is used by retrieveExportWithContentIdentifier, etc. As with other import/export remotes, that the tree is recorded in the export log, and gets grafted into the git-annex branch. importKey changed to be able to return Nothing, to indicate when an ImportLocation is not an annex object and so should be skipped from being included in the tree. It did not seem to make sense to have git-annex import do this, since from the user's perspective, it's not like other imports. So only git-annex sync does it. Note that, git-annex sync does not yet download objects from such remotes that are preferred content. importKeys is run with content downloading disabled, to avoid getting the content of all objects. Perhaps what's needed is for seekSyncContent to be run with these remotes, but I don't know if it will just work (in particular, it needs to avoid trying to transfer objects to them), so I skipped that for now. (Untested and unused as of yet.) This commit was sponsored by Jochen Bartl on Patreon.
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Just importable -> importKeys remote importtreeconfig importcontent False importable >>= \case
Nothing -> warning $ concat
[ "Failed to import some files from "
, Remote.name remote
, ". Re-run command to resume import."
]
Just imported -> void $
includeCommandAction $
commitimport imported
where
importmessage = "import from " ++ Remote.name remote
tb = mkRemoteTrackingBranch remote branch
fromtrackingbranch a = inRepo $ a (fromRemoteTrackingBranch tb)
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listContents :: Remote -> ImportTreeConfig -> CheckGitIgnore -> TVar (Maybe (ImportableContentsChunkable Annex (ContentIdentifier, Remote.ByteSize))) -> CommandStart
listContents remote importtreeconfig ci tvar = starting "list" ai si $
listContents' remote importtreeconfig ci $ \importable -> do
liftIO $ atomically $ writeTVar tvar importable
next $ return True
where
ai = ActionItemOther (Just (Remote.name remote))
si = SeekInput []
listContents' :: Remote -> ImportTreeConfig -> CheckGitIgnore -> (Maybe (ImportableContentsChunkable Annex (ContentIdentifier, Remote.ByteSize)) -> Annex a) -> Annex a
listContents' remote importtreeconfig ci a =
makeImportMatcher remote >>= \case
Right matcher -> tryNonAsync (getImportableContents remote importtreeconfig ci matcher) >>= \case
Right importable -> a importable
Left e -> giveup $ "Unable to list contents of " ++ Remote.name remote ++ ": " ++ show e
Left err -> giveup $ unwords
[ "Cannot import from"
, Remote.name remote
, "because of a problem with its configuration:"
, err
]
commitRemote :: Remote -> Branch -> RemoteTrackingBranch -> Maybe Sha -> ImportTreeConfig -> ImportCommitConfig -> ImportableContentsChunkable Annex (Either Sha Key) -> CommandStart
make CommandStart return a StartMessage The goal is to be able to run CommandStart in the main thread when -J is used, rather than unncessarily passing it off to a worker thread, which incurs overhead that is signficant when the CommandStart is going to quickly decide to stop. To do that, the message it displays needs to be displayed in the worker thread, after the CommandStart has run. Also, the change will mean that CommandStart will no longer necessarily run with the same Annex state as CommandPerform. While its docs already said it should avoid modifying Annex state, I audited all the CommandStart code as part of the conversion. (Note that CommandSeek already sometimes runs with a different Annex state, and that has not been a source of any problems, so I am not too worried that this change will lead to breakage going forward.) The only modification of Annex state I found was it calling allowMessages in some Commands that default to noMessages. Dealt with that by adding a startCustomOutput and a startingUsualMessages. This lets a command start with noMessages and then select the output it wants for each CommandStart. One bit of breakage: onlyActionOn has been removed from commands that used it. The plan is that, since a StartMessage contains an ActionItem, when a Key can be extracted from that, the parallel job runner can run onlyActionOn' automatically. Then commands won't need to worry about this detail. Future work. Otherwise, this was a fairly straightforward process of making each CommandStart compile again. Hopefully other behavior changes were mostly avoided. In a few cases, a command had a CommandStart that called a CommandPerform that then called showStart multiple times. I have collapsed those down to a single start action. The main command to perhaps suffer from it is Command.Direct, which used to show a start for each file, and no longer does. Another minor behavior change is that some commands used showStart before, but had an associated file and a Key available, so were changed to ShowStart with an ActionItemAssociatedFile. That will not change the normal output or behavior, but --json output will now include the key. This should not break it for anyone using a real json parser.
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commitRemote remote branch tb trackingcommit importtreeconfig importcommitconfig importable =
starting "update" ai si $ do
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importcommit <- buildImportCommit remote importtreeconfig importcommitconfig importable
next $ updateremotetrackingbranch importcommit
where
ai = ActionItemOther (Just $ fromRef $ fromRemoteTrackingBranch tb)
si = SeekInput []
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-- Update the tracking branch. Done even when there
-- is nothing new to import, to make sure it exists.
updateremotetrackingbranch importcommit =
case importcommit <|> trackingcommit of
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Just c -> do
setRemoteTrackingBranch tb c
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return True
Nothing -> do
warning $ "Nothing to import and " ++ fromRef branch ++ " does not exist."
return False