Don't clear newIndices. This might fix some errors? But I don't see how they would occur anyway unless another error had already occurred
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@ -1863,6 +1863,7 @@ Zotero.Integration.Session = function(doc) {
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this.uncitedItems = {};
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this.omittedItems = {};
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this.embeddedItems = {};
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this.newIndices = {};
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this.embeddedZoteroItems = {};
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this.embeddedZoteroItemsByURI = {};
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this.customBibliographyText = {};
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@ -1881,7 +1882,6 @@ Zotero.Integration.Session.prototype.resetRequest = function(doc) {
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this.bibliographyDataHasChanged = false;
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this.updateItemIDs = {};
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this.updateIndices = {};
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this.newIndices = {};
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this.oldCitationIDs = this.citationIDs;
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