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commit translators as separate files, combine CiteBase translators, and modify SPIE translator

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This commit is contained in:
Simon Kornblith 2008-09-11 04:40:07 +00:00
parent 6a3c62c23c
commit 032e0439a1
264 changed files with 36688 additions and 0 deletions
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translators/BioInfoBank.js Normal file
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{
"translatorID":"4c9dbe33-e64f-4536-a02f-f347fa1f187d",
"translatorType":4,
"label":"BioInfoBank",
"creator":"Michael Berkowitz",
"target":"http://lib.bioinfo.pl/",
"minVersion":"1.0.0b4.r5",
"maxVersion":"",
"priority":100,
"inRepository":true,
"lastUpdated":"2008-04-03 19:45:00"
}
function detectWeb(doc, url) {
return "multiple";
}
function doWeb(doc, url) {
var pmids = new Array();
var items = new Object();
var titles = doc.evaluate('//div[@class="css_pmid"]/div[@class="css_pmid_title"]/a', doc, null, XPathResult.ANY_TYPE, null);
var title;
while (title = titles.iterateNext()) {
items[title.href] = Zotero.Utilities.trimInternal(title.textContent);
}
items = Zotero.selectItems(items);
for (var i in items) {
pmids.push(i.match(/pmid:(\d+)/)[1]);
}
var newUri = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=PubMed&retmode=xml&rettype=citation&id="+pmids.join(",");
Zotero.Utilities.HTTP.doGet(newUri, function(text) {
// Remove xml parse instruction and doctype
text = text.replace(/<!DOCTYPE[^>]*>/, "").replace(/<\?xml[^>]*\?>/, "");
var xml = new XML(text);
for(var i=0; i<xml.PubmedArticle.length(); i++) {
var newItem = new Zotero.Item("journalArticle");
var citation = xml.PubmedArticle[i].MedlineCitation;
var PMID = citation.PMID.text().toString();
newItem.extra = "PMID: "+PMID;
// add attachments
if(doc) {
newItem.attachments.push({document:doc, title:"PubMed Snapshot"});
} else {
var url = "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids="+PMID;
newItem.attachments.push({url:url, title:"PubMed Snapshot",
mimeType:"text/html"});
}
var article = citation.Article;
if(article.ArticleTitle.length()) {
var title = article.ArticleTitle.text().toString();
if(title.substr(-1) == ".") {
title = title.substring(0, title.length-1);
}
newItem.title = title;
}
if (article.Pagination.MedlinePgn.length()){
newItem.pages = article.Pagination.MedlinePgn.text().toString();
}
if(article.Journal.length()) {
var issn = article.Journal.ISSN.text().toString();
if(issn) {
newItem.ISSN = issn.replace(/[^0-9]/g, "");
}
newItem.journalAbbreviation = Zotero.Utilities.superCleanString(citation.MedlineJournalInfo.MedlineTA.text().toString());
if(article.Journal.Title.length()) {
newItem.publicationTitle = Zotero.Utilities.superCleanString(article.Journal.Title.text().toString());
} else if(citation.MedlineJournalInfo.MedlineTA.length()) {
newItem.publicationTitle = newItem.journalAbbreviation;
}
if(article.Journal.JournalIssue.length()) {
newItem.volume = article.Journal.JournalIssue.Volume.text().toString();
newItem.issue = article.Journal.JournalIssue.Issue.text().toString();
if(article.Journal.JournalIssue.PubDate.length()) { // try to get the date
if(article.Journal.JournalIssue.PubDate.Day.text().toString() != "") {
newItem.date = article.Journal.JournalIssue.PubDate.Month.text().toString()+" "+article.Journal.JournalIssue.PubDate.Day.text().toString()+", "+article.Journal.JournalIssue.PubDate.Year.text().toString();
} else if(article.Journal.JournalIssue.PubDate.Month.text().toString() != "") {
newItem.date = article.Journal.JournalIssue.PubDate.Month.text().toString()+" "+article.Journal.JournalIssue.PubDate.Year.text().toString();
} else if(article.Journal.JournalIssue.PubDate.Year.text().toString() != "") {
newItem.date = article.Journal.JournalIssue.PubDate.Year.text().toString();
}
}
}
}
if(article.AuthorList.length() && article.AuthorList.Author.length()) {
var authors = article.AuthorList.Author;
for(var j=0; j<authors.length(); j++) {
var lastName = authors[j].LastName.text().toString();
var firstName = authors[j].FirstName.text().toString();
if(firstName == "") {
var firstName = authors[j].ForeName.text().toString();
}
if(firstName || lastName) {
newItem.creators.push({lastName:lastName, firstName:firstName});
}
}
}
if (citation.MeshHeadingList && citation.MeshHeadingList.MeshHeading) {
var keywords = citation.MeshHeadingList.MeshHeading;
for (var k = 0 ; k < keywords.length() ; k++) {
newItem.tags.push(keywords[k].DescriptorName.text().toString());
}
}
newItem.abstractNote = article.Abstract.AbstractText.toString()
newItem.complete();
}
Zotero.done();
});
}