Updated Upstream (Bukkit/CraftBukkit/Spigot) (#9228)

Upstream has released updates that appear to apply and compile correctly.
This update has not been tested by PaperMC and as with ANY update, please do your own testing

Bukkit Changes:
4727d326 Don't let Sign extend SignSide, mark API as experimental
9b29bdcc PR-845: Add preliminary support for multi sided signs

CraftBukkit Changes:
b346a5f6d PR-1170: Add preliminary support for multi sided signs
86c816189 Update SQLite version
d9324b4bc Fix addition of custom smithing trim / transform recipes

Spigot Changes:
7d7b241e Rebuild patches

patches/server/0001-Setup-Gradle-project.patch

@@ -28,7 +28,7 @@ index 3df8c60ab5cd1454660980883f80668d535b742b..37c3a00659ce21623be07317f4f6a45b
 +/.factorypath
 diff --git a/build.gradle.kts b/build.gradle.kts
 new file mode 100644
-index 0000000000000000000000000000000000000000..e090175d2fbe8eba664500feafc29c0567bb0c87
+index 0000000000000000000000000000000000000000..c207fd9b001dccaa71ba1615ffcdc093dd2b581c
 --- /dev/null
 +++ b/build.gradle.kts
 @@ -0,0 +1,137 @@
@@ -48,7 +48,7 @@ index 0000000000000000000000000000000000000000..e090175d2fbe8eba664500feafc29c05
 +    }
 +    implementation("org.ow2.asm:asm:9.4")
 +    implementation("commons-lang:commons-lang:2.6")
-+    runtimeOnly("org.xerial:sqlite-jdbc:3.41.0.0")
++    runtimeOnly("org.xerial:sqlite-jdbc:3.41.2.2")
 +    runtimeOnly("com.mysql:mysql-connector-j:8.0.32")
 +
 +    runtimeOnly("org.apache.maven:maven-resolver-provider:3.8.5")
@@ -171,7 +171,7 @@ index 0000000000000000000000000000000000000000..e090175d2fbe8eba664500feafc29c05
 +}
 diff --git a/pom.xml b/pom.xml
 deleted file mode 100644
-index 67ae7c25ee4e007e1fdfb3ac37687e1bd8ab58ca..0000000000000000000000000000000000000000
+index d3490073bebae5918fe97895ead320c06c8358c7..0000000000000000000000000000000000000000
 --- a/pom.xml
 +++ /dev/null
 @@ -1,587 +0,0 @@
@@ -405,7 +405,7 @@ index 67ae7c25ee4e007e1fdfb3ac37687e1bd8ab58ca..00000000000000000000000000000000
 -        <dependency>
 -            <groupId>org.xerial</groupId>
 -            <artifactId>sqlite-jdbc</artifactId>
--            <version>3.41.0.0</version>
+-            <version>3.41.2.2</version>
 -            <scope>runtime</scope>
 -        </dependency>
 -        <dependency>