git-annex/Command/MetaData.hs
Joey Hess 2cecc8d2a3
Added GIT_ANNEX_VECTOR_CLOCK environment variable
Can be used to override the default timestamps used in log files in the
git-annex branch. This is a dangerous environment variable; use with
caution.

Note that this only affects writing to the logs on the git-annex branch.
It is not used for metadata in git commits (other env vars can be set for
that).

There are many other places where timestamps are still used, that don't
get committed to git, but do touch disk. Including regular timestamps
of files, and timestamps embedded in some files in .git/annex/, including
the last fsck timestamp and timestamps in transfer log files.

A good way to find such things in git-annex is to get for getPOSIXTime and
getCurrentTime, although some of the results are of course false positives
that never hit disk (unless git-annex gets swapped out..)

So this commit does NOT necessarily make git-annex comply with some HIPPA
privacy regulations; it's up to the user to determine if they can use it in
a way compliant with such regulations.

Benchmarking: It takes 0.00114 milliseconds to call getEnv
"GIT_ANNEX_VECTOR_CLOCK" when that env var is not set. So, 100 thousand log
files can be written with an added overhead of only 0.114 seconds. That
should be by far swamped by the actual overhead of writing the log files
and making the commit containing them.

This commit was supported by the NSF-funded DataLad project.
2017-08-14 14:19:58 -04:00

184 lines
5.6 KiB
Haskell

{- git-annex command
-
- Copyright 2014-2016 Joey Hess <id@joeyh.name>
-
- Licensed under the GNU GPL version 3 or higher.
-}
module Command.MetaData where
import Command
import Annex.MetaData
import Annex.VectorClock
import Logs.MetaData
import Annex.WorkTree
import Messages.JSON (JSONActionItem(..))
import Types.Messages
import qualified Data.Set as S
import qualified Data.Map as M
import qualified Data.Text as T
import qualified Data.ByteString.Lazy.UTF8 as BU
import Data.Aeson
import Control.Concurrent
cmd :: Command
cmd = withGlobalOptions ([jsonOption] ++ annexedMatchingOptions) $
command "metadata" SectionMetaData
"sets or gets metadata of a file"
paramPaths (seek <$$> optParser)
data MetaDataOptions = MetaDataOptions
{ forFiles :: CmdParams
, getSet :: GetSet
, keyOptions :: Maybe KeyOptions
, batchOption :: BatchMode
}
data GetSet = Get MetaField | GetAll | Set [ModMeta]
optParser :: CmdParamsDesc -> Parser MetaDataOptions
optParser desc = MetaDataOptions
<$> cmdParams desc
<*> ((Get <$> getopt) <|> (Set <$> some modopts) <|> pure GetAll)
<*> optional parseKeyOptions
<*> parseBatchOption
where
getopt = option (eitherReader mkMetaField)
( long "get" <> short 'g' <> metavar paramField
<> help "get single metadata field"
)
modopts = option (eitherReader parseModMeta)
( long "set" <> short 's' <> metavar "FIELD[+-]=VALUE"
<> help "set or unset metadata value"
)
<|> (AddMeta tagMetaField . toMetaValue <$> strOption
( long "tag" <> short 't' <> metavar "TAG"
<> help "set a tag"
))
<|> (DelMeta tagMetaField . Just . toMetaValue <$> strOption
( long "untag" <> short 'u' <> metavar "TAG"
<> help "remove a tag"
))
<|> option (eitherReader (\f -> DelMeta <$> mkMetaField f <*> pure Nothing))
( long "remove" <> short 'r' <> metavar "FIELD"
<> help "remove all values of a field"
)
seek :: MetaDataOptions -> CommandSeek
seek o = case batchOption o of
NoBatch -> do
c <- liftIO currentVectorClock
let seeker = case getSet o of
Get _ -> withFilesInGit
GetAll -> withFilesInGit
Set _ -> withFilesInGitNonRecursive
"Not recursively setting metadata. Use --force to do that."
withKeyOptions (keyOptions o) False
(startKeys c o)
(seeker $ whenAnnexed $ start c o)
(forFiles o)
Batch -> withMessageState $ \s -> case outputType s of
JSONOutput _ -> batchInput parseJSONInput $
commandAction . startBatch
_ -> giveup "--batch is currently only supported in --json mode"
start :: VectorClock -> MetaDataOptions -> FilePath -> Key -> CommandStart
start c o file k = startKeys c o k (mkActionItem afile)
where
afile = AssociatedFile (Just file)
startKeys :: VectorClock -> MetaDataOptions -> Key -> ActionItem -> CommandStart
startKeys c o k ai = case getSet o of
Get f -> do
l <- S.toList . currentMetaDataValues f <$> getCurrentMetaData k
liftIO $ forM_ l $
putStrLn . fromMetaValue
stop
_ -> do
showStart' "metadata" k ai
next $ perform c o k
perform :: VectorClock -> MetaDataOptions -> Key -> CommandPerform
perform c o k = case getSet o of
Set ms -> do
oldm <- getCurrentMetaData k
let m = combineMetaData $ map (modMeta oldm) ms
addMetaData' k m c
next $ cleanup k
_ -> next $ cleanup k
cleanup :: Key -> CommandCleanup
cleanup k = do
m <- getCurrentMetaData k
let Object o = toJSON (MetaDataFields m)
maybeShowJSON $ AesonObject o
showLongNote $ unlines $ concatMap showmeta $
map unwrapmeta (fromMetaData m)
return True
where
unwrapmeta (f, v) = (fromMetaField f, map fromMetaValue (S.toList v))
showmeta (f, vs) = map ((f ++ "=") ++) vs
-- Metadata serialized to JSON in the field named "fields" of
-- a larger object.
newtype MetaDataFields = MetaDataFields MetaData
deriving (Show)
instance ToJSON MetaDataFields where
toJSON (MetaDataFields m) = object [ (fieldsField, toJSON m) ]
instance FromJSON MetaDataFields where
parseJSON (Object v) = do
f <- v .: fieldsField
case f of
Nothing -> return (MetaDataFields emptyMetaData)
Just v' -> MetaDataFields <$> parseJSON v'
parseJSON _ = fail "expected an object"
fieldsField :: T.Text
fieldsField = T.pack "fields"
parseJSONInput :: String -> Either String (Either FilePath Key, MetaData)
parseJSONInput i = do
v <- eitherDecode (BU.fromString i)
let m = case itemAdded v of
Nothing -> emptyMetaData
Just (MetaDataFields m') -> m'
case (itemKey v, itemFile v) of
(Just k, _) -> Right (Right k, m)
(Nothing, Just f) -> Right (Left f, m)
(Nothing, Nothing) -> Left "JSON input is missing either file or key"
startBatch :: (Either FilePath Key, MetaData) -> CommandStart
startBatch (i, (MetaData m)) = case i of
Left f -> do
mk <- lookupFile f
case mk of
Just k -> go k (mkActionItem (AssociatedFile (Just f)))
Nothing -> giveup $ "not an annexed file: " ++ f
Right k -> go k (mkActionItem k)
where
go k ai = do
showStart' "metadata" k ai
let o = MetaDataOptions
{ forFiles = []
, getSet = if MetaData m == emptyMetaData
then GetAll
else Set $ map mkModMeta (M.toList m)
, keyOptions = Nothing
, batchOption = NoBatch
}
t <- liftIO currentVectorClock
-- It would be bad if two batch mode changes used exactly
-- the same timestamp, since the order of adds and removals
-- of the same metadata value would then be indeterminate.
-- To guarantee that never happens, delay 1 microsecond,
-- so the timestamp will always be different. This is
-- probably less expensive than cleaner methods,
-- such as taking from a list of increasing timestamps.
liftIO $ threadDelay 1
next $ perform t o k
mkModMeta (f, s)
| S.null s = DelMeta f Nothing
| otherwise = SetMeta f s