2cecc8d2a3
Can be used to override the default timestamps used in log files in the git-annex branch. This is a dangerous environment variable; use with caution. Note that this only affects writing to the logs on the git-annex branch. It is not used for metadata in git commits (other env vars can be set for that). There are many other places where timestamps are still used, that don't get committed to git, but do touch disk. Including regular timestamps of files, and timestamps embedded in some files in .git/annex/, including the last fsck timestamp and timestamps in transfer log files. A good way to find such things in git-annex is to get for getPOSIXTime and getCurrentTime, although some of the results are of course false positives that never hit disk (unless git-annex gets swapped out..) So this commit does NOT necessarily make git-annex comply with some HIPPA privacy regulations; it's up to the user to determine if they can use it in a way compliant with such regulations. Benchmarking: It takes 0.00114 milliseconds to call getEnv "GIT_ANNEX_VECTOR_CLOCK" when that env var is not set. So, 100 thousand log files can be written with an added overhead of only 0.114 seconds. That should be by far swamped by the actual overhead of writing the log files and making the commit containing them. This commit was supported by the NSF-funded DataLad project.
184 lines
5.6 KiB
Haskell
184 lines
5.6 KiB
Haskell
{- git-annex command
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-
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- Copyright 2014-2016 Joey Hess <id@joeyh.name>
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-
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- Licensed under the GNU GPL version 3 or higher.
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-}
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module Command.MetaData where
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import Command
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import Annex.MetaData
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import Annex.VectorClock
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import Logs.MetaData
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import Annex.WorkTree
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import Messages.JSON (JSONActionItem(..))
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import Types.Messages
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import qualified Data.Set as S
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import qualified Data.Map as M
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import qualified Data.Text as T
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import qualified Data.ByteString.Lazy.UTF8 as BU
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import Data.Aeson
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import Control.Concurrent
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cmd :: Command
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cmd = withGlobalOptions ([jsonOption] ++ annexedMatchingOptions) $
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command "metadata" SectionMetaData
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"sets or gets metadata of a file"
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paramPaths (seek <$$> optParser)
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data MetaDataOptions = MetaDataOptions
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{ forFiles :: CmdParams
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, getSet :: GetSet
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, keyOptions :: Maybe KeyOptions
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, batchOption :: BatchMode
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}
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data GetSet = Get MetaField | GetAll | Set [ModMeta]
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optParser :: CmdParamsDesc -> Parser MetaDataOptions
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optParser desc = MetaDataOptions
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<$> cmdParams desc
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<*> ((Get <$> getopt) <|> (Set <$> some modopts) <|> pure GetAll)
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<*> optional parseKeyOptions
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<*> parseBatchOption
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where
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getopt = option (eitherReader mkMetaField)
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( long "get" <> short 'g' <> metavar paramField
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<> help "get single metadata field"
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)
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modopts = option (eitherReader parseModMeta)
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( long "set" <> short 's' <> metavar "FIELD[+-]=VALUE"
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<> help "set or unset metadata value"
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)
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<|> (AddMeta tagMetaField . toMetaValue <$> strOption
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( long "tag" <> short 't' <> metavar "TAG"
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<> help "set a tag"
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))
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<|> (DelMeta tagMetaField . Just . toMetaValue <$> strOption
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( long "untag" <> short 'u' <> metavar "TAG"
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<> help "remove a tag"
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))
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<|> option (eitherReader (\f -> DelMeta <$> mkMetaField f <*> pure Nothing))
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( long "remove" <> short 'r' <> metavar "FIELD"
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<> help "remove all values of a field"
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)
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seek :: MetaDataOptions -> CommandSeek
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seek o = case batchOption o of
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NoBatch -> do
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c <- liftIO currentVectorClock
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let seeker = case getSet o of
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Get _ -> withFilesInGit
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GetAll -> withFilesInGit
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Set _ -> withFilesInGitNonRecursive
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"Not recursively setting metadata. Use --force to do that."
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withKeyOptions (keyOptions o) False
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(startKeys c o)
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(seeker $ whenAnnexed $ start c o)
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(forFiles o)
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Batch -> withMessageState $ \s -> case outputType s of
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JSONOutput _ -> batchInput parseJSONInput $
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commandAction . startBatch
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_ -> giveup "--batch is currently only supported in --json mode"
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start :: VectorClock -> MetaDataOptions -> FilePath -> Key -> CommandStart
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start c o file k = startKeys c o k (mkActionItem afile)
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where
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afile = AssociatedFile (Just file)
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startKeys :: VectorClock -> MetaDataOptions -> Key -> ActionItem -> CommandStart
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startKeys c o k ai = case getSet o of
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Get f -> do
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l <- S.toList . currentMetaDataValues f <$> getCurrentMetaData k
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liftIO $ forM_ l $
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putStrLn . fromMetaValue
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stop
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_ -> do
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showStart' "metadata" k ai
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next $ perform c o k
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perform :: VectorClock -> MetaDataOptions -> Key -> CommandPerform
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perform c o k = case getSet o of
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Set ms -> do
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oldm <- getCurrentMetaData k
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let m = combineMetaData $ map (modMeta oldm) ms
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addMetaData' k m c
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next $ cleanup k
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_ -> next $ cleanup k
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cleanup :: Key -> CommandCleanup
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cleanup k = do
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m <- getCurrentMetaData k
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let Object o = toJSON (MetaDataFields m)
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maybeShowJSON $ AesonObject o
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showLongNote $ unlines $ concatMap showmeta $
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map unwrapmeta (fromMetaData m)
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return True
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where
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unwrapmeta (f, v) = (fromMetaField f, map fromMetaValue (S.toList v))
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showmeta (f, vs) = map ((f ++ "=") ++) vs
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-- Metadata serialized to JSON in the field named "fields" of
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-- a larger object.
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newtype MetaDataFields = MetaDataFields MetaData
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deriving (Show)
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instance ToJSON MetaDataFields where
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toJSON (MetaDataFields m) = object [ (fieldsField, toJSON m) ]
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instance FromJSON MetaDataFields where
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parseJSON (Object v) = do
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f <- v .: fieldsField
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case f of
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Nothing -> return (MetaDataFields emptyMetaData)
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Just v' -> MetaDataFields <$> parseJSON v'
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parseJSON _ = fail "expected an object"
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fieldsField :: T.Text
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fieldsField = T.pack "fields"
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parseJSONInput :: String -> Either String (Either FilePath Key, MetaData)
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parseJSONInput i = do
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v <- eitherDecode (BU.fromString i)
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let m = case itemAdded v of
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Nothing -> emptyMetaData
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Just (MetaDataFields m') -> m'
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case (itemKey v, itemFile v) of
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(Just k, _) -> Right (Right k, m)
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(Nothing, Just f) -> Right (Left f, m)
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(Nothing, Nothing) -> Left "JSON input is missing either file or key"
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startBatch :: (Either FilePath Key, MetaData) -> CommandStart
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startBatch (i, (MetaData m)) = case i of
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Left f -> do
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mk <- lookupFile f
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case mk of
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Just k -> go k (mkActionItem (AssociatedFile (Just f)))
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Nothing -> giveup $ "not an annexed file: " ++ f
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Right k -> go k (mkActionItem k)
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where
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go k ai = do
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showStart' "metadata" k ai
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let o = MetaDataOptions
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{ forFiles = []
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, getSet = if MetaData m == emptyMetaData
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then GetAll
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else Set $ map mkModMeta (M.toList m)
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, keyOptions = Nothing
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, batchOption = NoBatch
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}
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t <- liftIO currentVectorClock
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-- It would be bad if two batch mode changes used exactly
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-- the same timestamp, since the order of adds and removals
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-- of the same metadata value would then be indeterminate.
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-- To guarantee that never happens, delay 1 microsecond,
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-- so the timestamp will always be different. This is
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-- probably less expensive than cleaner methods,
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-- such as taking from a list of increasing timestamps.
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liftIO $ threadDelay 1
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next $ perform t o k
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mkModMeta (f, s)
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| S.null s = DelMeta f Nothing
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| otherwise = SetMeta f s
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