git-annex/Annex/Content.hs
Joey Hess bdec7fed9c
convert TopFilePath to use RawFilePath
Adds a dependency on filepath-bytestring, an as yet unreleased fork of
filepath that operates on RawFilePath.

Git.Repo also changed to use RawFilePath for the path to the repo.

This does eliminate some RawFilePath -> FilePath -> RawFilePath
conversions. And filepath-bytestring's </> is probably faster.
But I don't expect a major performance improvement from this.
This is mostly groundwork for making Annex.Location use RawFilePath,
which will allow for a conversion-free pipleline.
2019-12-09 15:07:21 -04:00

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{- git-annex file content managing
-
- Copyright 2010-2019 Joey Hess <id@joeyh.name>
-
- Licensed under the GNU AGPL version 3 or higher.
-}
{-# LANGUAGE CPP #-}
module Annex.Content (
inAnnex,
inAnnex',
inAnnexSafe,
inAnnexCheck,
objectFileExists,
lockContentShared,
lockContentForRemoval,
ContentRemovalLock,
RetrievalSecurityPolicy(..),
getViaTmp,
getViaTmpFromDisk,
checkDiskSpaceToGet,
prepTmp,
withTmp,
checkDiskSpace,
needMoreDiskSpace,
moveAnnex,
populatePointerFile,
linkToAnnex,
linkFromAnnex,
LinkAnnexResult(..),
unlinkAnnex,
checkedCopyFile,
linkOrCopy,
linkOrCopy',
sendAnnex,
prepSendAnnex,
removeAnnex,
moveBad,
KeyLocation(..),
listKeys,
saveState,
downloadUrl,
preseedTmp,
dirKeys,
withObjectLoc,
staleKeysPrune,
pruneTmpWorkDirBefore,
isUnmodified,
isUnmodifiedCheap,
verifyKeyContent,
VerifyConfig(..),
Verification(..),
unVerified,
withTmpWorkDir,
) where
import System.IO.Unsafe (unsafeInterleaveIO)
import qualified Data.Set as S
import Annex.Common
import Logs.Location
import Types.Transfer
import Logs.Transfer
import qualified Git
import qualified Annex
import qualified Annex.Queue
import qualified Annex.Branch
import Utility.FileMode
import qualified Annex.Url as Url
import Utility.CopyFile
import Utility.Metered
import Git.FilePath
import Annex.Perms
import Annex.Link
import Annex.LockPool
import Messages.Progress
import Types.Remote (unVerified, Verification(..), RetrievalSecurityPolicy(..))
import qualified Types.Remote
import qualified Types.Backend
import qualified Backend
import qualified Database.Keys
import Types.NumCopies
import Types.Key
import Annex.UUID
import Annex.InodeSentinal
import Utility.InodeCache
import Annex.Content.LowLevel
import Annex.Content.PointerFile
import Annex.Concurrent
import Types.WorkerPool
{- Checks if a given key's content is currently present. -}
inAnnex :: Key -> Annex Bool
inAnnex key = inAnnexCheck key $ liftIO . doesFileExist
{- Runs an arbitrary check on a key's content. -}
inAnnexCheck :: Key -> (FilePath -> Annex Bool) -> Annex Bool
inAnnexCheck key check = inAnnex' id False check key
{- inAnnex that performs an arbitrary check of the key's content. -}
inAnnex' :: (a -> Bool) -> a -> (FilePath -> Annex a) -> Key -> Annex a
inAnnex' isgood bad check key = withObjectLoc key $ \loc -> do
r <- check loc
if isgood r
then ifM (annexThin <$> Annex.getGitConfig)
-- When annex.thin is set, the object file
-- could be modified; make sure it's not.
-- (Suppress any messages about
-- checksumming, to avoid them cluttering
-- the display.)
( ifM (doQuietAction $ isUnmodified key loc)
( return r
, return bad
)
, return r
)
else return bad
{- Like inAnnex, checks if the object file for a key exists,
- but there are no guarantees it has the right content. -}
objectFileExists :: Key -> Annex Bool
objectFileExists key = calcRepo (gitAnnexLocation key) >>= liftIO . doesFileExist
{- A safer check; the key's content must not only be present, but
- is not in the process of being removed. -}
inAnnexSafe :: Key -> Annex (Maybe Bool)
inAnnexSafe key = inAnnex' (fromMaybe True) (Just False) go key
where
is_locked = Nothing
is_unlocked = Just True
is_missing = Just False
go contentfile = flip checklock contentfile =<< contentLockFile key
#ifndef mingw32_HOST_OS
checklock Nothing contentfile = checkOr is_missing contentfile
{- The content file must exist, but the lock file generally
- won't exist unless a removal is in process. -}
checklock (Just lockfile) contentfile =
ifM (liftIO $ doesFileExist contentfile)
( checkOr is_unlocked lockfile
, return is_missing
)
checkOr d lockfile = checkLocked lockfile >>= return . \case
Nothing -> d
Just True -> is_locked
Just False -> is_unlocked
#else
checklock Nothing contentfile = liftIO $ ifM (doesFileExist contentfile)
( lockShared contentfile >>= \case
Nothing -> return is_locked
Just lockhandle -> do
dropLock lockhandle
return is_unlocked
, return is_missing
)
{- In Windows, see if we can take a shared lock. If so,
- remove the lock file to clean up after ourselves. -}
checklock (Just lockfile) contentfile =
ifM (liftIO $ doesFileExist contentfile)
( modifyContent lockfile $ liftIO $
lockShared lockfile >>= \case
Nothing -> return is_locked
Just lockhandle -> do
dropLock lockhandle
void $ tryIO $ nukeFile lockfile
return is_unlocked
, return is_missing
)
#endif
{- Windows has to use a separate lock file from the content, since
- locking the actual content file would interfere with the user's
- use of it. -}
contentLockFile :: Key -> Annex (Maybe FilePath)
#ifndef mingw32_HOST_OS
contentLockFile _ = pure Nothing
#else
contentLockFile key = Just <$> calcRepo (gitAnnexContentLock key)
#endif
{- Prevents the content from being removed while the action is running.
- Uses a shared lock.
-
- If locking fails, or the content is not present, throws an exception
- rather than running the action.
-}
lockContentShared :: Key -> (VerifiedCopy -> Annex a) -> Annex a
lockContentShared key a = lockContentUsing lock key $ ifM (inAnnex key)
( do
u <- getUUID
withVerifiedCopy LockedCopy u (return True) a
, giveup $ "failed to lock content: not present"
)
where
#ifndef mingw32_HOST_OS
lock contentfile Nothing = tryLockShared Nothing contentfile
lock _ (Just lockfile) = posixLocker tryLockShared lockfile
#else
lock = winLocker lockShared
#endif
{- Exclusively locks content, while performing an action that
- might remove it.
-
- If locking fails, throws an exception rather than running the action.
-}
lockContentForRemoval :: Key -> (ContentRemovalLock -> Annex a) -> Annex a
lockContentForRemoval key a = lockContentUsing lock key $
a (ContentRemovalLock key)
where
#ifndef mingw32_HOST_OS
{- Since content files are stored with the write bit disabled, have
- to fiddle with permissions to open for an exclusive lock. -}
lock contentfile Nothing = bracket_
(thawContent contentfile)
(freezeContent contentfile)
(tryLockExclusive Nothing contentfile)
lock _ (Just lockfile) = posixLocker tryLockExclusive lockfile
#else
lock = winLocker lockExclusive
#endif
{- Passed the object content file, and maybe a separate lock file to use,
- when the content file itself should not be locked. -}
type ContentLocker = FilePath -> Maybe LockFile -> Annex (Maybe LockHandle)
#ifndef mingw32_HOST_OS
posixLocker :: (Maybe FileMode -> LockFile -> Annex (Maybe LockHandle)) -> LockFile -> Annex (Maybe LockHandle)
posixLocker takelock lockfile = do
mode <- annexFileMode
modifyContent lockfile $
takelock (Just mode) lockfile
#else
winLocker :: (LockFile -> IO (Maybe LockHandle)) -> ContentLocker
winLocker takelock _ (Just lockfile) = do
modifyContent lockfile $
void $ liftIO $ tryIO $
writeFile lockfile ""
liftIO $ takelock lockfile
-- never reached; windows always uses a separate lock file
winLocker _ _ Nothing = return Nothing
#endif
lockContentUsing :: ContentLocker -> Key -> Annex a -> Annex a
lockContentUsing locker key a = do
contentfile <- calcRepo $ gitAnnexLocation key
lockfile <- contentLockFile key
bracket
(lock contentfile lockfile)
(unlock lockfile)
(const a)
where
alreadylocked = giveup "content is locked"
failedtolock e = giveup $ "failed to lock content: " ++ show e
lock contentfile lockfile =
(maybe alreadylocked return
=<< locker contentfile lockfile)
`catchIO` failedtolock
#ifndef mingw32_HOST_OS
unlock mlockfile lck = do
maybe noop cleanuplockfile mlockfile
liftIO $ dropLock lck
#else
unlock mlockfile lck = do
-- Can't delete a locked file on Windows
liftIO $ dropLock lck
maybe noop cleanuplockfile mlockfile
#endif
cleanuplockfile lockfile = modifyContent lockfile $
void $ liftIO $ tryIO $
nukeFile lockfile
{- Runs an action, passing it the temp file to get,
- and if the action succeeds, verifies the file matches
- the key and moves the file into the annex as a key's content. -}
getViaTmp :: RetrievalSecurityPolicy -> VerifyConfig -> Key -> (FilePath -> Annex (Bool, Verification)) -> Annex Bool
getViaTmp rsp v key action = checkDiskSpaceToGet key False $
getViaTmpFromDisk rsp v key action
{- Like getViaTmp, but does not check that there is enough disk space
- for the incoming key. For use when the key content is already on disk
- and not being copied into place. -}
getViaTmpFromDisk :: RetrievalSecurityPolicy -> VerifyConfig -> Key -> (FilePath -> Annex (Bool, Verification)) -> Annex Bool
getViaTmpFromDisk rsp v key action = checkallowed $ do
tmpfile <- prepTmp key
resuming <- liftIO $ doesFileExist tmpfile
(ok, verification) <- action tmpfile
-- When the temp file already had content, we don't know if
-- that content is good or not, so only trust if it the action
-- Verified it in passing. Otherwise, force verification even
-- if the VerifyConfig normally disables it.
let verification' = if resuming
then case verification of
Verified -> Verified
_ -> MustVerify
else verification
if ok
then ifM (verifyKeyContent rsp v verification' key tmpfile)
( ifM (pruneTmpWorkDirBefore tmpfile (moveAnnex key))
( do
logStatus key InfoPresent
return True
, return False
)
, do
warning "verification of content failed"
-- The bad content is not retained, because
-- a retry should not try to resume from it
-- since it's apparently corrupted.
-- Also, the bad content could be any data,
-- including perhaps the content of another
-- file than the one that was requested,
-- and so it's best not to keep it on disk.
pruneTmpWorkDirBefore tmpfile (liftIO . nukeFile)
return False
)
-- On transfer failure, the tmp file is left behind, in case
-- caller wants to resume its transfer
else return False
where
-- Avoid running the action to get the content when the
-- RetrievalSecurityPolicy would cause verification to always fail.
checkallowed a = case rsp of
RetrievalAllKeysSecure -> a
RetrievalVerifiableKeysSecure
| isVerifiable (fromKey keyVariety key) -> a
| otherwise -> ifM (annexAllowUnverifiedDownloads <$> Annex.getGitConfig)
( a
, warnUnverifiableInsecure key >> return False
)
{- Verifies that a file is the expected content of a key.
-
- Configuration can prevent verification, for either a
- particular remote or always, unless the RetrievalSecurityPolicy
- requires verification.
-
- Most keys have a known size, and if so, the file size is checked.
-
- When the key's backend allows verifying the content (via checksum),
- it is checked.
-
- If the RetrievalSecurityPolicy requires verification and the key's
- backend doesn't support it, the verification will fail.
-}
verifyKeyContent :: RetrievalSecurityPolicy -> VerifyConfig -> Verification -> Key -> FilePath -> Annex Bool
verifyKeyContent rsp v verification k f = case (rsp, verification) of
(_, Verified) -> return True
(RetrievalVerifiableKeysSecure, _)
| isVerifiable (fromKey keyVariety k) -> verify
| otherwise -> ifM (annexAllowUnverifiedDownloads <$> Annex.getGitConfig)
( verify
, warnUnverifiableInsecure k >> return False
)
(_, UnVerified) -> ifM (shouldVerify v)
( verify
, return True
)
(_, MustVerify) -> verify
where
verify = enteringStage VerifyStage $ verifysize <&&> verifycontent
verifysize = case fromKey keySize k of
Nothing -> return True
Just size -> do
size' <- liftIO $ catchDefaultIO 0 $ getFileSize f
return (size' == size)
verifycontent = case Types.Backend.verifyKeyContent =<< Backend.maybeLookupBackendVariety (fromKey keyVariety k) of
Nothing -> return True
Just verifier -> verifier k f
warnUnverifiableInsecure :: Key -> Annex ()
warnUnverifiableInsecure k = warning $ unwords
[ "Getting " ++ kv ++ " keys with this remote is not secure;"
, "the content cannot be verified to be correct."
, "(Use annex.security.allow-unverified-downloads to bypass"
, "this safety check.)"
]
where
kv = decodeBS (formatKeyVariety (fromKey keyVariety k))
data VerifyConfig = AlwaysVerify | NoVerify | RemoteVerify Remote | DefaultVerify
shouldVerify :: VerifyConfig -> Annex Bool
shouldVerify AlwaysVerify = return True
shouldVerify NoVerify = return False
shouldVerify DefaultVerify = annexVerify <$> Annex.getGitConfig
shouldVerify (RemoteVerify r) =
(shouldVerify DefaultVerify
<&&> pure (remoteAnnexVerify (Types.Remote.gitconfig r)))
-- Export remotes are not key/value stores, so always verify
-- content from them even when verification is disabled.
<||> Types.Remote.isExportSupported r
{- Checks if there is enough free disk space to download a key
- to its temp file.
-
- When the temp file already exists, count the space it is using as
- free, since the download will overwrite it or resume.
-
- Wen there's enough free space, runs the download action.
-}
checkDiskSpaceToGet :: Key -> a -> Annex a -> Annex a
checkDiskSpaceToGet key unabletoget getkey = do
tmp <- fromRepo $ gitAnnexTmpObjectLocation key
e <- liftIO $ doesFileExist tmp
alreadythere <- liftIO $ if e
then getFileSize tmp
else return 0
ifM (checkDiskSpace Nothing key alreadythere True)
( do
-- The tmp file may not have been left writable
when e $ thawContent tmp
getkey
, return unabletoget
)
prepTmp :: Key -> Annex FilePath
prepTmp key = do
tmp <- fromRepo $ gitAnnexTmpObjectLocation key
createAnnexDirectory (parentDir tmp)
return tmp
{- Prepares a temp file for a key, runs an action on it, and cleans up
- the temp file. If the action throws an exception, the temp file is
- left behind, which allows for resuming.
-}
withTmp :: Key -> (FilePath -> Annex a) -> Annex a
withTmp key action = do
tmp <- prepTmp key
res <- action tmp
pruneTmpWorkDirBefore tmp (liftIO . nukeFile)
return res
{- Moves a key's content into .git/annex/objects/
-
- When a key has associated pointer files, the object is hard
- linked (or copied) to the files, and the object file is left thawed.
-
- What if the key there already has content? This could happen for
- various reasons; perhaps the same content is being annexed again.
- Perhaps there has been a hash collision generating the keys.
-
- The current strategy is to assume that in this case it's safe to delete
- one of the two copies of the content; and the one already in the annex
- is left there, assuming it's the original, canonical copy.
-
- I considered being more paranoid, and checking that both files had
- the same content. Decided against it because A) users explicitly choose
- a backend based on its hashing properties and so if they're dealing
- with colliding files it's their own fault and B) adding such a check
- would not catch all cases of colliding keys. For example, perhaps
- a remote has a key; if it's then added again with different content then
- the overall system now has two different peices of content for that
- key, and one of them will probably get deleted later. So, adding the
- check here would only raise expectations that git-annex cannot truely
- meet.
-
- May return false, when a particular variety of key is not being
- accepted into the repository. Will display a warning message in this
- case. May also throw exceptions in some cases.
-}
moveAnnex :: Key -> FilePath -> Annex Bool
moveAnnex key src = ifM (checkSecureHashes key)
( do
withObjectLoc key storeobject
return True
, return False
)
where
storeobject dest = ifM (liftIO $ doesFileExist dest)
( alreadyhave
, modifyContent dest $ do
freezeContent src
liftIO $ moveFile src dest
g <- Annex.gitRepo
fs <- map (`fromTopFilePath` g)
<$> Database.Keys.getAssociatedFiles key
unless (null fs) $ do
ics <- mapM (populatePointerFile (Restage True) key (toRawFilePath dest)) fs
Database.Keys.storeInodeCaches' key [dest] (catMaybes ics)
)
alreadyhave = liftIO $ removeFile src
checkSecureHashes :: Key -> Annex Bool
checkSecureHashes key
| cryptographicallySecure (fromKey keyVariety key) = return True
| otherwise = ifM (annexSecureHashesOnly <$> Annex.getGitConfig)
( do
warning $ "annex.securehashesonly blocked adding " ++ decodeBS (formatKeyVariety (fromKey keyVariety key)) ++ " key to annex objects"
return False
, return True
)
data LinkAnnexResult = LinkAnnexOk | LinkAnnexFailed | LinkAnnexNoop
{- Populates the annex object file by hard linking or copying a source
- file to it. -}
linkToAnnex :: Key -> FilePath -> Maybe InodeCache -> Annex LinkAnnexResult
linkToAnnex key src srcic = ifM (checkSecureHashes key)
( do
dest <- calcRepo (gitAnnexLocation key)
modifyContent dest $ linkAnnex To key src srcic dest Nothing
, return LinkAnnexFailed
)
{- Makes a destination file be a link or copy from the annex object. -}
linkFromAnnex :: Key -> FilePath -> Maybe FileMode -> Annex LinkAnnexResult
linkFromAnnex key dest destmode = do
src <- calcRepo (gitAnnexLocation key)
srcic <- withTSDelta (liftIO . genInodeCache src)
linkAnnex From key src srcic dest destmode
data FromTo = From | To
{- Hard links or copies from or to the annex object location.
- Updates inode cache.
-
- Freezes or thaws the destination appropriately.
-
- When a hard link is made, the annex object necessarily has to be thawed
- too. So, adding an object to the annex with a hard link can prevent
- losing the content if the source file is deleted, but does not
- guard against modifications.
-
- Nothing is done if the destination file already exists.
-}
linkAnnex :: FromTo -> Key -> FilePath -> Maybe InodeCache -> FilePath -> Maybe FileMode -> Annex LinkAnnexResult
linkAnnex _ _ _ Nothing _ _ = return LinkAnnexFailed
linkAnnex fromto key src (Just srcic) dest destmode =
withTSDelta (liftIO . genInodeCache dest) >>= \case
Just destic -> do
cs <- Database.Keys.getInodeCaches key
if null cs
then Database.Keys.addInodeCaches key [srcic, destic]
else Database.Keys.addInodeCaches key [srcic]
return LinkAnnexNoop
Nothing -> linkOrCopy key src dest destmode >>= \case
Nothing -> failed
Just r -> do
case fromto of
From -> thawContent dest
To -> case r of
Copied -> freezeContent dest
Linked -> noop
checksrcunchanged
where
failed = do
Database.Keys.addInodeCaches key [srcic]
return LinkAnnexFailed
checksrcunchanged = withTSDelta (liftIO . genInodeCache src) >>= \case
Just srcic' | compareStrong srcic srcic' -> do
destic <- withTSDelta (liftIO . genInodeCache dest)
Database.Keys.addInodeCaches key $
catMaybes [destic, Just srcic]
return LinkAnnexOk
_ -> do
liftIO $ nukeFile dest
failed
{- Removes the annex object file for a key. Lowlevel. -}
unlinkAnnex :: Key -> Annex ()
unlinkAnnex key = do
obj <- calcRepo $ gitAnnexLocation key
modifyContent obj $ do
secureErase obj
liftIO $ nukeFile obj
{- Runs an action to transfer an object's content.
-
- In some cases, it's possible for the file to change as it's being sent.
- If this happens, runs the rollback action and returns False. The
- rollback action should remove the data that was transferred.
-}
sendAnnex :: Key -> Annex () -> (FilePath -> Annex Bool) -> Annex Bool
sendAnnex key rollback sendobject = go =<< prepSendAnnex key
where
go Nothing = return False
go (Just (f, checksuccess)) = do
r <- sendobject f
ifM checksuccess
( return r
, do
rollback
return False
)
{- Returns a file that contains an object's content,
- and a check to run after the transfer is complete.
-
- When a file is unlocked, it's possble for its content to
- change as it's being sent. The check detects this case
- and returns False.
-
- Note that the returned check action is, in some cases, run in the
- Annex monad of the remote that is receiving the object, rather than
- the sender. So it cannot rely on Annex state.
-}
prepSendAnnex :: Key -> Annex (Maybe (FilePath, Annex Bool))
prepSendAnnex key = withObjectLoc key $ \f -> do
cache <- Database.Keys.getInodeCaches key
cache' <- if null cache
-- Since no inode cache is in the database, this
-- object is not currently unlocked. But that could
-- change while the transfer is in progress, so
-- generate an inode cache for the starting
-- content.
then maybeToList <$>
withTSDelta (liftIO . genInodeCache f)
else pure cache
return $ if null cache'
then Nothing
else Just (f, sameInodeCache f cache')
{- Performs an action, passing it the location to use for a key's content. -}
withObjectLoc :: Key -> (FilePath -> Annex a) -> Annex a
withObjectLoc key a = a =<< calcRepo (gitAnnexLocation key)
cleanObjectLoc :: Key -> Annex () -> Annex ()
cleanObjectLoc key cleaner = do
file <- calcRepo $ gitAnnexLocation key
void $ tryIO $ thawContentDir file
cleaner
liftIO $ removeparents file (3 :: Int)
where
removeparents _ 0 = noop
removeparents file n = do
let dir = parentDir file
maybe noop (const $ removeparents dir (n-1))
<=< catchMaybeIO $ removeDirectory dir
{- Removes a key's file from .git/annex/objects/
-}
removeAnnex :: ContentRemovalLock -> Annex ()
removeAnnex (ContentRemovalLock key) = withObjectLoc key $ \file ->
cleanObjectLoc key $ do
secureErase file
liftIO $ nukeFile file
g <- Annex.gitRepo
mapM_ (\f -> void $ tryIO $ resetpointer $ fromRawFilePath $ fromTopFilePath f g)
=<< Database.Keys.getAssociatedFiles key
Database.Keys.removeInodeCaches key
where
-- Check associated pointer file for modifications, and reset if
-- it's unmodified.
resetpointer file = ifM (isUnmodified key file)
( depopulatePointerFile key (toRawFilePath file)
-- Modified file, so leave it alone.
-- If it was a hard link to the annex object,
-- that object might have been frozen as part of the
-- removal process, so thaw it.
, void $ tryIO $ thawContent file
)
{- Check if a file contains the unmodified content of the key.
-
- The expensive way to tell is to do a verification of its content.
- The cheaper way is to see if the InodeCache for the key matches the
- file. -}
isUnmodified :: Key -> FilePath -> Annex Bool
isUnmodified key f = go =<< geti
where
go Nothing = return False
go (Just fc) = isUnmodifiedCheap' key fc <||> expensivecheck fc
expensivecheck fc = ifM (verifyKeyContent RetrievalAllKeysSecure AlwaysVerify UnVerified key f)
( do
-- The file could have been modified while it was
-- being verified. Detect that.
ifM (geti >>= maybe (return False) (compareInodeCaches fc))
( do
-- Update the InodeCache to avoid
-- performing this expensive check again.
Database.Keys.addInodeCaches key [fc]
return True
, return False
)
, return False
)
geti = withTSDelta (liftIO . genInodeCache f)
{- Cheap check if a file contains the unmodified content of the key,
- only checking the InodeCache of the key.
-
- Note that, on systems not supporting high-resolution mtimes,
- this may report a false positive when repeated edits are made to a file
- within a small time window (eg 1 second).
-}
isUnmodifiedCheap :: Key -> FilePath -> Annex Bool
isUnmodifiedCheap key f = maybe (return False) (isUnmodifiedCheap' key)
=<< withTSDelta (liftIO . genInodeCache f)
isUnmodifiedCheap' :: Key -> InodeCache -> Annex Bool
isUnmodifiedCheap' key fc =
anyM (compareInodeCaches fc) =<< Database.Keys.getInodeCaches key
{- Moves a key out of .git/annex/objects/ into .git/annex/bad, and
- returns the file it was moved to. -}
moveBad :: Key -> Annex FilePath
moveBad key = do
src <- calcRepo $ gitAnnexLocation key
bad <- fromRepo gitAnnexBadDir
let dest = bad </> takeFileName src
createAnnexDirectory (parentDir dest)
cleanObjectLoc key $
liftIO $ moveFile src dest
logStatus key InfoMissing
return dest
data KeyLocation = InAnnex | InAnywhere
{- InAnnex only lists keys with content in .git/annex/objects.
- InAnywhere lists all keys that have directories in
- .git/annex/objects, whether or not the content is present.
-}
listKeys :: KeyLocation -> Annex [Key]
listKeys keyloc = do
dir <- fromRepo gitAnnexObjectDir
{- In order to run Annex monad actions within unsafeInterleaveIO,
- the current state is taken and reused. No changes made to this
- state will be preserved.
-}
s <- Annex.getState id
depth <- gitAnnexLocationDepth <$> Annex.getGitConfig
liftIO $ walk s depth dir
where
walk s depth dir = do
contents <- catchDefaultIO [] (dirContents dir)
if depth < 2
then do
contents' <- filterM (present s) contents
let keys = mapMaybe (fileKey . takeFileName) contents'
continue keys []
else do
let deeper = walk s (depth - 1)
continue [] (map deeper contents)
continue keys [] = return keys
continue keys (a:as) = do
{- Force lazy traversal with unsafeInterleaveIO. -}
morekeys <- unsafeInterleaveIO a
continue (morekeys++keys) as
inanywhere = case keyloc of
InAnywhere -> True
_ -> False
present _ _ | inanywhere = pure True
present _ d = presentInAnnex d
presentInAnnex = doesFileExist . contentfile
contentfile d = d </> takeFileName d
{- Things to do to record changes to content when shutting down.
-
- It's acceptable to avoid committing changes to the branch,
- especially if performing a short-lived action.
-}
saveState :: Bool -> Annex ()
saveState nocommit = doSideAction $ do
Annex.Queue.flush
Database.Keys.closeDb
unless nocommit $
whenM (annexAlwaysCommit <$> Annex.getGitConfig) $
Annex.Branch.commit =<< Annex.Branch.commitMessage
{- Downloads content from any of a list of urls, displaying a progress
- meter. -}
downloadUrl :: Key -> MeterUpdate -> [Url.URLString] -> FilePath -> Annex Bool
downloadUrl k p urls file =
-- Poll the file to handle configurations where an external
-- download command is used.
meteredFile file (Just p) k $
Url.withUrlOptions $ \uo ->
anyM (\u -> Url.download p u file uo) urls
{- Copies a key's content, when present, to a temp file.
- This is used to speed up some rsyncs. -}
preseedTmp :: Key -> FilePath -> Annex Bool
preseedTmp key file = go =<< inAnnex key
where
go False = return False
go True = do
ok <- copy
when ok $ thawContent file
return ok
copy = ifM (liftIO $ doesFileExist file)
( return True
, do
s <- calcRepo $ gitAnnexLocation key
liftIO $ ifM (doesFileExist s)
( copyFileExternal CopyTimeStamps s file
, return False
)
)
{- Finds files directly inside a directory like gitAnnexBadDir
- (not in subdirectories) and returns the corresponding keys. -}
dirKeys :: (Git.Repo -> FilePath) -> Annex [Key]
dirKeys dirspec = do
dir <- fromRepo dirspec
ifM (liftIO $ doesDirectoryExist dir)
( do
contents <- liftIO $ getDirectoryContents dir
files <- liftIO $ filterM doesFileExist $
map (dir </>) contents
return $ mapMaybe (fileKey . takeFileName) files
, return []
)
{- Looks in the specified directory for bad/tmp keys, and returns a list
- of those that might still have value, or might be stale and removable.
-
- Also, stale keys that can be proven to have no value
- (ie, their content is already present) are deleted.
-}
staleKeysPrune :: (Git.Repo -> FilePath) -> Bool -> Annex [Key]
staleKeysPrune dirspec nottransferred = do
contents <- dirKeys dirspec
dups <- filterM inAnnex contents
let stale = contents `exclude` dups
dir <- fromRepo dirspec
forM_ dups $ \k ->
pruneTmpWorkDirBefore (dir </> keyFile k) (liftIO . removeFile)
if nottransferred
then do
inprogress <- S.fromList . map (transferKey . fst)
<$> getTransfers
return $ filter (`S.notMember` inprogress) stale
else return stale
{- Prune the work dir associated with the specified content file,
- before performing an action that deletes the file, or moves it away.
-
- This preserves the invariant that the workdir never exists without
- the content file.
-}
pruneTmpWorkDirBefore :: FilePath -> (FilePath -> Annex a) -> Annex a
pruneTmpWorkDirBefore f action = do
let workdir = gitAnnexTmpWorkDir f
liftIO $ whenM (doesDirectoryExist workdir) $
removeDirectoryRecursive workdir
action f
{- Runs an action, passing it a temporary work directory where
- it can write files while receiving the content of a key.
-
- Preserves the invariant that the workdir never exists without the
- content file, by creating an empty content file first.
-
- On exception, or when the action returns Nothing,
- the temporary work directory is retained (unless
- empty), so anything in it can be used on resume.
-}
withTmpWorkDir :: Key -> (FilePath -> Annex (Maybe a)) -> Annex (Maybe a)
withTmpWorkDir key action = do
-- Create the object file if it does not exist. This way,
-- staleKeysPrune only has to look for object files, and can
-- clean up gitAnnexTmpWorkDir for those it finds.
obj <- prepTmp key
unlessM (liftIO $ doesFileExist obj) $ do
liftIO $ writeFile obj ""
setAnnexFilePerm obj
let tmpdir = gitAnnexTmpWorkDir obj
liftIO $ createDirectoryIfMissing True tmpdir
setAnnexDirPerm tmpdir
res <- action tmpdir
case res of
Just _ -> liftIO $ removeDirectoryRecursive tmpdir
Nothing -> liftIO $ void $ tryIO $ removeDirectory tmpdir
return res
{- Finds items in the first, smaller list, that are not
- present in the second, larger list.
-
- Constructing a single set, of the list that tends to be
- smaller, appears more efficient in both memory and CPU
- than constructing and taking the S.difference of two sets. -}
exclude :: Ord a => [a] -> [a] -> [a]
exclude [] _ = [] -- optimisation
exclude smaller larger = S.toList $ remove larger $ S.fromList smaller
where
remove a b = foldl (flip S.delete) b a