git-annex/Annex.hs
Joey Hess ba7ecbc6a9
avoid flushing keys db queue after each Annex action
The flush was only done Annex.run' to make sure that the queue was flushed
before git-annex exits. But, doing it there means that as soon as one
change gets queued, it gets flushed soon after, which contributes to
excessive writes to the database, slowing git-annex down.
(This does not yet speed git-annex up, but it is a stepping stone to
doing so.)

Database queues do not autoflush when garbage collected, so have to
be flushed explicitly. I don't think it's possible to make them
autoflush (except perhaps if git-annex sqitched to using ResourceT..).
The comment in Database.Keys.closeDb used to be accurate, since the
automatic flushing did mean that all writes reached the database even
when closeDb was not called. But now, closeDb or flushDb needs to be
called before stopping using an Annex state. So, removed that comment.

In Remote.Git, change to using quiesce everywhere that it used to use
stopCoProcesses. This means that uses on onLocal in there are just as
slow as before. I considered only calling closeDb on the local git remotes
when git-annex exits. But, the reason that Remote.Git calls stopCoProcesses
in each onLocal is so as not to leave git processes running that have files
open on the remote repo, when it's on removable media. So, it seemed to make
sense to also closeDb after each one, since sqlite may also keep files
open. Although that has not seemed to cause problems with removable
media so far. It was also just easier to quiesce in each onLocal than
once at the end. This does likely leave performance on the floor, so
could be revisited.

In Annex.Content.saveState, there was no reason to close the db,
flushing it is enough.

The rest of the changes are from auditing for Annex.new, and making
sure that quiesce is called, after any action that might possibly need
it.

After that audit, I'm pretty sure that the change to Annex.run' is
safe. The only concern might be that this does let more changes get
queued for write to the db, and if git-annex is interrupted, those will be
lost. But interrupting git-annex can obviously already prevent it from
writing the most recent change to the db, so it must recover from such
lost data... right?

Sponsored-by: Dartmouth College's Datalad project
2022-10-12 14:12:23 -04:00

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{- git-annex monad
-
- Copyright 2010-2021 Joey Hess <id@joeyh.name>
-
- Licensed under the GNU AGPL version 3 or higher.
-}
{-# LANGUAGE GeneralizedNewtypeDeriving, BangPatterns, PackageImports #-}
module Annex (
Annex,
AnnexState(..),
AnnexRead(..),
new,
run,
eval,
makeRunner,
getRead,
getState,
changeState,
withState,
setField,
setOutput,
getField,
addCleanupAction,
gitRepo,
inRepo,
fromRepo,
calcRepo,
calcRepo',
getGitConfig,
overrideGitConfig,
changeGitRepo,
adjustGitRepo,
addGitConfigOverride,
getGitConfigOverrides,
getRemoteGitConfig,
withCurrentState,
changeDirectory,
getGitRemotes,
incError,
) where
import Common
import qualified Git
import qualified Git.Config
import qualified Git.Construct
import Annex.Fixup
import Git.HashObject
import Git.CheckAttr
import Git.CheckIgnore
import qualified Git.Hook
import qualified Git.Queue
import Types.Key
import Types.Backend
import Types.GitConfig
import qualified Types.Remote
import Types.Crypto
import Types.BranchState
import Types.TrustLevel
import Types.Group
import Types.Messages
import Types.Concurrency
import Types.UUID
import Types.FileMatcher
import Types.NumCopies
import Types.LockCache
import Types.DesktopNotify
import Types.CleanupActions
import Types.AdjustedBranch
import Types.WorkerPool
import Types.IndexFiles
import Types.CatFileHandles
import Types.RemoteConfig
import Types.TransferrerPool
import Types.VectorClock
import Annex.VectorClock.Utility
import Annex.Debug.Utility
import qualified Database.Keys.Handle as Keys
import Utility.InodeCache
import Utility.Url
import Utility.ResourcePool
import Utility.HumanTime
import Git.Credential (CredentialCache(..))
import "mtl" Control.Monad.Reader
import Control.Concurrent
import Control.Concurrent.STM
import qualified Control.Monad.Fail as Fail
import qualified Data.Map.Strict as M
import qualified Data.Set as S
import Data.Time.Clock.POSIX
{- git-annex's monad is a ReaderT around an AnnexState stored in a MVar,
- and an AnnexRead. The MVar is not exposed outside this module.
-
- Note that when an Annex action fails and the exception is caught,
- any changes the action has made to the AnnexState are retained,
- due to the use of the MVar to store the state.
-}
newtype Annex a = Annex { runAnnex :: ReaderT (MVar AnnexState, AnnexRead) IO a }
deriving (
Monad,
MonadIO,
MonadReader (MVar AnnexState, AnnexRead),
MonadCatch,
MonadThrow,
MonadMask,
Fail.MonadFail,
Functor,
Applicative,
Alternative
)
-- Values that can be read, but not modified by an Annex action.
data AnnexRead = AnnexRead
{ activekeys :: TVar (M.Map Key ThreadId)
, activeremotes :: MVar (M.Map (Types.Remote.RemoteA Annex) Integer)
, keysdbhandle :: Keys.DbHandle
, sshstalecleaned :: TMVar Bool
, signalactions :: TVar (M.Map SignalAction (Int -> IO ()))
, transferrerpool :: TransferrerPool
, debugenabled :: Bool
, debugselector :: DebugSelector
, ciphers :: TMVar (M.Map StorableCipher Cipher)
, fast :: Bool
, force :: Bool
, forcenumcopies :: Maybe NumCopies
, forcemincopies :: Maybe MinCopies
, forcebackend :: Maybe String
, useragent :: Maybe String
, desktopnotify :: DesktopNotify
, gitcredentialcache :: TMVar CredentialCache
}
newAnnexRead :: GitConfig -> IO AnnexRead
newAnnexRead c = do
emptyactivekeys <- newTVarIO M.empty
emptyactiveremotes <- newMVar M.empty
kh <- Keys.newDbHandle
sc <- newTMVarIO False
si <- newTVarIO M.empty
tp <- newTransferrerPool
cm <- newTMVarIO M.empty
cc <- newTMVarIO (CredentialCache M.empty)
return $ AnnexRead
{ activekeys = emptyactivekeys
, activeremotes = emptyactiveremotes
, keysdbhandle = kh
, sshstalecleaned = sc
, signalactions = si
, transferrerpool = tp
, debugenabled = annexDebug c
, debugselector = debugSelectorFromGitConfig c
, ciphers = cm
, fast = False
, force = False
, forcebackend = Nothing
, forcenumcopies = Nothing
, forcemincopies = Nothing
, useragent = Nothing
, desktopnotify = mempty
, gitcredentialcache = cc
}
-- Values that can change while running an Annex action.
data AnnexState = AnnexState
{ repo :: Git.Repo
, repoadjustment :: (Git.Repo -> IO Git.Repo)
, gitconfig :: GitConfig
, gitconfigadjustment :: (GitConfig -> GitConfig)
, gitconfigoverride :: [String]
, gitremotes :: Maybe [Git.Repo]
, gitconfiginodecache :: Maybe InodeCache
, backend :: Maybe (BackendA Annex)
, remotes :: [Types.Remote.RemoteA Annex]
, output :: MessageState
, concurrency :: ConcurrencySetting
, daemon :: Bool
, branchstate :: BranchState
, repoqueue :: Maybe (Git.Queue.Queue Annex)
, catfilehandles :: CatFileHandles
, hashobjecthandle :: Maybe (ResourcePool HashObjectHandle)
, checkattrhandle :: Maybe (ResourcePool CheckAttrHandle)
, checkignorehandle :: Maybe (ResourcePool CheckIgnoreHandle)
, globalnumcopies :: Maybe NumCopies
, globalmincopies :: Maybe MinCopies
, limit :: ExpandableMatcher Annex
, timelimit :: Maybe (Duration, POSIXTime)
, sizelimit :: Maybe (TVar Integer)
, uuiddescmap :: Maybe UUIDDescMap
, preferredcontentmap :: Maybe (FileMatcherMap Annex)
, requiredcontentmap :: Maybe (FileMatcherMap Annex)
, remoteconfigmap :: Maybe (M.Map UUID RemoteConfig)
, forcetrust :: TrustMap
, trustmap :: Maybe TrustMap
, groupmap :: Maybe GroupMap
, lockcache :: LockCache
, fields :: M.Map String String
, cleanupactions :: M.Map CleanupAction (Annex ())
, sentinalstatus :: Maybe SentinalStatus
, errcounter :: Integer
, reachedlimit :: Bool
, adjustedbranchrefreshcounter :: Integer
, unusedkeys :: Maybe (S.Set Key)
, tempurls :: M.Map Key URLString
, existinghooks :: M.Map Git.Hook.Hook Bool
, workers :: Maybe (TMVar (WorkerPool (AnnexState, AnnexRead)))
, cachedcurrentbranch :: (Maybe (Maybe Git.Branch, Maybe Adjustment))
, cachedgitenv :: Maybe (AltIndexFile, FilePath, [(String, String)])
, urloptions :: Maybe UrlOptions
, insmudgecleanfilter :: Bool
, getvectorclock :: IO CandidateVectorClock
}
newAnnexState :: GitConfig -> Git.Repo -> IO AnnexState
newAnnexState c r = do
o <- newMessageState
vc <- startVectorClock
return $ AnnexState
{ repo = r
, repoadjustment = return
, gitconfig = c
, gitconfigadjustment = id
, gitconfigoverride = []
, gitremotes = Nothing
, gitconfiginodecache = Nothing
, backend = Nothing
, remotes = []
, output = o
, concurrency = ConcurrencyCmdLine NonConcurrent
, daemon = False
, branchstate = startBranchState
, repoqueue = Nothing
, catfilehandles = catFileHandlesNonConcurrent
, hashobjecthandle = Nothing
, checkattrhandle = Nothing
, checkignorehandle = Nothing
, globalnumcopies = Nothing
, globalmincopies = Nothing
, limit = BuildingMatcher []
, timelimit = Nothing
, sizelimit = Nothing
, uuiddescmap = Nothing
, preferredcontentmap = Nothing
, requiredcontentmap = Nothing
, remoteconfigmap = Nothing
, forcetrust = M.empty
, trustmap = Nothing
, groupmap = Nothing
, lockcache = M.empty
, fields = M.empty
, cleanupactions = M.empty
, sentinalstatus = Nothing
, errcounter = 0
, reachedlimit = False
, adjustedbranchrefreshcounter = 0
, unusedkeys = Nothing
, tempurls = M.empty
, existinghooks = M.empty
, workers = Nothing
, cachedcurrentbranch = Nothing
, cachedgitenv = Nothing
, urloptions = Nothing
, insmudgecleanfilter = False
, getvectorclock = vc
}
{- Makes an Annex state object for the specified git repo.
- Ensures the config is read, if it was not already, and performs
- any necessary git repo fixups. -}
new :: Git.Repo -> IO (AnnexState, AnnexRead)
new r = do
r' <- Git.Config.read r
let c = extractGitConfig FromGitConfig r'
st <- newAnnexState c =<< fixupRepo r' c
rd <- newAnnexRead c
return (st, rd)
{- Performs an action in the Annex monad from a starting state,
- returning a new state. -}
run :: (AnnexState, AnnexRead) -> Annex a -> IO (a, (AnnexState, AnnexRead))
run (st, rd) a = do
mv <- newMVar st
run' mv rd a
run' :: MVar AnnexState -> AnnexRead -> Annex a -> IO (a, (AnnexState, AnnexRead))
run' mvar rd a = do
r <- runReaderT (runAnnex a) (mvar, rd)
st <- takeMVar mvar
return (r, (st, rd))
{- Performs an action in the Annex monad from a starting state,
- and throws away the changed state. -}
eval :: (AnnexState, AnnexRead) -> Annex a -> IO a
eval v a = fst <$> run v a
{- Makes a runner action, that allows diving into IO and from inside
- the IO action, running an Annex action. -}
makeRunner :: Annex (Annex a -> IO a)
makeRunner = do
(mvar, rd) <- ask
return $ \a -> do
(r, (s, _rd)) <- run' mvar rd a
putMVar mvar s
return r
getRead :: (AnnexRead -> v) -> Annex v
getRead selector = selector . snd <$> ask
getState :: (AnnexState -> v) -> Annex v
getState selector = do
mvar <- fst <$> ask
st <- liftIO $ readMVar mvar
return $ selector st
changeState :: (AnnexState -> AnnexState) -> Annex ()
changeState modifier = do
mvar <- fst <$> ask
liftIO $ modifyMVar_ mvar $ return . modifier
withState :: (AnnexState -> IO (AnnexState, b)) -> Annex b
withState modifier = do
mvar <- fst <$> ask
liftIO $ modifyMVar mvar modifier
{- Sets a field to a value -}
setField :: String -> String -> Annex ()
setField field value = changeState $ \st ->
st { fields = M.insert field value $ fields st }
{- Adds a cleanup action to perform. -}
addCleanupAction :: CleanupAction -> Annex () -> Annex ()
addCleanupAction k a = changeState $ \st ->
st { cleanupactions = M.insert k a $ cleanupactions st }
{- Sets the type of output to emit. -}
setOutput :: OutputType -> Annex ()
setOutput o = changeState $ \st ->
let m = output st
in st { output = m { outputType = adjustOutputType (outputType m) o } }
{- Gets the value of a field. -}
getField :: String -> Annex (Maybe String)
getField field = M.lookup field <$> getState fields
{- Returns the annex's git repository. -}
gitRepo :: Annex Git.Repo
gitRepo = getState repo
{- Runs an IO action in the annex's git repository. -}
inRepo :: (Git.Repo -> IO a) -> Annex a
inRepo a = liftIO . a =<< gitRepo
{- Extracts a value from the annex's git repisitory. -}
fromRepo :: (Git.Repo -> a) -> Annex a
fromRepo a = a <$> gitRepo
{- Calculates a value from an annex's git repository and its GitConfig. -}
calcRepo :: (Git.Repo -> GitConfig -> IO a) -> Annex a
calcRepo a = do
s <- getState id
liftIO $ a (repo s) (gitconfig s)
calcRepo' :: (Git.Repo -> GitConfig -> a) -> Annex a
calcRepo' f = do
s <- getState id
pure $ f (repo s) (gitconfig s)
{- Gets the GitConfig settings. -}
getGitConfig :: Annex GitConfig
getGitConfig = getState gitconfig
{- Overrides a GitConfig setting. The modification persists across
- reloads of the repo's config. -}
overrideGitConfig :: (GitConfig -> GitConfig) -> Annex ()
overrideGitConfig f = changeState $ \st -> st
{ gitconfigadjustment = gitconfigadjustment st . f
, gitconfig = f (gitconfig st)
}
{- Adds an adjustment to the Repo data. Adjustments persist across reloads
- of the repo's config.
-
- Note that the action may run more than once, and should avoid eg,
- appending the same value to a repo's config when run repeatedly.
-}
adjustGitRepo :: (Git.Repo -> IO Git.Repo) -> Annex ()
adjustGitRepo a = do
changeState $ \st -> st { repoadjustment = \r -> repoadjustment st r >>= a }
changeGitRepo =<< gitRepo
{- Adds git config setting, like "foo=bar". It will be passed with -c
- to git processes. The config setting is also recorded in the Repo,
- and the GitConfig is updated. -}
addGitConfigOverride :: String -> Annex ()
addGitConfigOverride v = do
adjustGitRepo $ \r ->
Git.Config.store (encodeBS v) Git.Config.ConfigList $
r { Git.gitGlobalOpts = go (Git.gitGlobalOpts r) }
changeState $ \st -> st { gitconfigoverride = v : gitconfigoverride st }
where
-- Remove any prior occurrance of the setting to avoid
-- building up many of them when the adjustment is run repeatedly,
-- and add the setting to the end.
go [] = [Param "-c", Param v]
go (Param "-c": Param v':rest) | v' == v = go rest
go (c:rest) = c : go rest
{- Values that were passed to addGitConfigOverride. -}
getGitConfigOverrides :: Annex [String]
getGitConfigOverrides = reverse <$> getState gitconfigoverride
{- Changing the git Repo data also involves re-extracting its GitConfig. -}
changeGitRepo :: Git.Repo -> Annex ()
changeGitRepo r = do
repoadjuster <- getState repoadjustment
gitconfigadjuster <- getState gitconfigadjustment
r' <- liftIO $ repoadjuster r
changeState $ \st -> st
{ repo = r'
, gitconfig = gitconfigadjuster $
extractGitConfig FromGitConfig r'
}
{- Gets the RemoteGitConfig from a remote, given the Git.Repo for that
- remote. -}
getRemoteGitConfig :: Git.Repo -> Annex RemoteGitConfig
getRemoteGitConfig r = do
g <- gitRepo
liftIO $ atomically $ extractRemoteGitConfig g (Git.repoDescribe r)
{- Converts an Annex action into an IO action, that runs with a copy
- of the current Annex state.
-
- Use with caution; the action should not rely on changing the
- state, as it will be thrown away. -}
withCurrentState :: Annex a -> Annex (IO a)
withCurrentState a = do
(mvar, rd) <- ask
st <- liftIO $ readMVar mvar
return $ eval (st, rd) a
{- It's not safe to use setCurrentDirectory in the Annex monad,
- because the git repo paths are stored relative.
- Instead, use this.
-}
changeDirectory :: FilePath -> Annex ()
changeDirectory d = do
r <- liftIO . Git.adjustPath absPath =<< gitRepo
liftIO $ setCurrentDirectory d
r' <- liftIO $ Git.relPath r
changeState $ \st -> st { repo = r' }
incError :: Annex ()
incError = changeState $ \st ->
let !c = errcounter st + 1
!st' = st { errcounter = c }
in st'
getGitRemotes :: Annex [Git.Repo]
getGitRemotes = do
st <- getState id
case gitremotes st of
Just rs -> return rs
Nothing -> do
rs <- liftIO $ Git.Construct.fromRemotes (repo st)
changeState $ \st' -> st' { gitremotes = Just rs }
return rs