57780cb3a4
These files were left behind, and made getKeysPresent find keys that were not present. It would be expensive to make getKeysPresent check that the actual key files are present (it just lists the directories). But that's not needed if we just clean up the stale cache and mapping files. To handle systems that were in direct mode and got switched back with stale direct mode files, made cleanObjectLoc remove all files in the key's directory. git annex unused will still list keys that are gone but for which the stale direct mode files exists. To deal with that, made dropunused remove the key's directory even if the key does not seem to be present.
474 lines
14 KiB
Haskell
474 lines
14 KiB
Haskell
{- git-annex file content managing
|
|
-
|
|
- Copyright 2010,2012 Joey Hess <joey@kitenet.net>
|
|
-
|
|
- Licensed under the GNU GPL version 3 or higher.
|
|
-}
|
|
|
|
module Annex.Content (
|
|
inAnnex,
|
|
inAnnexSafe,
|
|
lockContent,
|
|
calcGitLink,
|
|
getViaTmp,
|
|
getViaTmpChecked,
|
|
getViaTmpUnchecked,
|
|
withTmp,
|
|
checkDiskSpace,
|
|
moveAnnex,
|
|
sendAnnex,
|
|
prepSendAnnex,
|
|
removeAnnex,
|
|
fromAnnex,
|
|
moveBad,
|
|
getKeysPresent,
|
|
saveState,
|
|
downloadUrl,
|
|
preseedTmp,
|
|
freezeContent,
|
|
thawContent,
|
|
replaceFile,
|
|
cleanObjectLoc,
|
|
) where
|
|
|
|
import System.IO.Unsafe (unsafeInterleaveIO)
|
|
|
|
import Common.Annex
|
|
import Logs.Location
|
|
import qualified Git
|
|
import qualified Annex
|
|
import qualified Annex.Queue
|
|
import qualified Annex.Branch
|
|
import Utility.DiskFree
|
|
import Utility.FileMode
|
|
import qualified Utility.Url as Url
|
|
import Types.Key
|
|
import Utility.DataUnits
|
|
import Utility.CopyFile
|
|
import Config
|
|
import Annex.Exception
|
|
import Git.SharedRepository
|
|
import Annex.Perms
|
|
import Annex.Content.Direct
|
|
|
|
{- Checks if a given key's content is currently present. -}
|
|
inAnnex :: Key -> Annex Bool
|
|
inAnnex = inAnnex' id False $ liftIO . doesFileExist
|
|
|
|
{- Generic inAnnex, handling both indirect and direct mode.
|
|
-
|
|
- In direct mode, at least one of the associated files must pass the
|
|
- check. Additionally, the file must be unmodified.
|
|
-}
|
|
inAnnex' :: (a -> Bool) -> a -> (FilePath -> Annex a) -> Key -> Annex a
|
|
inAnnex' isgood bad check key = withObjectLoc key checkindirect checkdirect
|
|
where
|
|
checkindirect loc = do
|
|
whenM (fromRepo Git.repoIsUrl) $
|
|
error "inAnnex cannot check remote repo"
|
|
check loc
|
|
checkdirect [] = return bad
|
|
checkdirect (loc:locs) = do
|
|
r <- check loc
|
|
if isgood r
|
|
then ifM (goodContent key loc)
|
|
( return r
|
|
, checkdirect locs
|
|
)
|
|
else checkdirect locs
|
|
|
|
{- A safer check; the key's content must not only be present, but
|
|
- is not in the process of being removed. -}
|
|
inAnnexSafe :: Key -> Annex (Maybe Bool)
|
|
inAnnexSafe = inAnnex' (maybe False id) (Just False) go
|
|
where
|
|
go f = liftIO $ openforlock f >>= check
|
|
openforlock f = catchMaybeIO $
|
|
openFd f ReadOnly Nothing defaultFileFlags
|
|
check Nothing = return is_missing
|
|
check (Just h) = do
|
|
v <- getLock h (ReadLock, AbsoluteSeek, 0, 0)
|
|
closeFd h
|
|
return $ case v of
|
|
Just _ -> is_locked
|
|
Nothing -> is_unlocked
|
|
is_locked = Nothing
|
|
is_unlocked = Just True
|
|
is_missing = Just False
|
|
|
|
{- Content is exclusively locked while running an action that might remove
|
|
- it. (If the content is not present, no locking is done.) -}
|
|
lockContent :: Key -> Annex a -> Annex a
|
|
lockContent key a = do
|
|
file <- inRepo $ gitAnnexLocation key
|
|
bracketIO (openforlock file >>= lock) unlock a
|
|
where
|
|
{- Since files are stored with the write bit disabled, have
|
|
- to fiddle with permissions to open for an exclusive lock. -}
|
|
openforlock f = catchMaybeIO $ ifM (doesFileExist f)
|
|
( withModifiedFileMode f
|
|
(`unionFileModes` ownerWriteMode)
|
|
open
|
|
, open
|
|
)
|
|
where
|
|
open = openFd f ReadWrite Nothing defaultFileFlags
|
|
lock Nothing = return Nothing
|
|
lock (Just fd) = do
|
|
v <- tryIO $ setLock fd (WriteLock, AbsoluteSeek, 0, 0)
|
|
case v of
|
|
Left _ -> error "content is locked"
|
|
Right _ -> return $ Just fd
|
|
unlock Nothing = noop
|
|
unlock (Just l) = closeFd l
|
|
|
|
{- Calculates the relative path to use to link a file to a key. -}
|
|
calcGitLink :: FilePath -> Key -> Annex FilePath
|
|
calcGitLink file key = do
|
|
cwd <- liftIO getCurrentDirectory
|
|
let absfile = fromMaybe whoops $ absNormPath cwd file
|
|
loc <- inRepo $ gitAnnexLocation key
|
|
return $ relPathDirToFile (parentDir absfile) loc
|
|
where
|
|
whoops = error $ "unable to normalize " ++ file
|
|
|
|
{- Runs an action, passing it a temporary filename to get,
|
|
- and if the action succeeds, moves the temp file into
|
|
- the annex as a key's content. -}
|
|
getViaTmp :: Key -> (FilePath -> Annex Bool) -> Annex Bool
|
|
getViaTmp = getViaTmpChecked (return True)
|
|
|
|
{- Like getViaTmp, but does not check that there is enough disk space
|
|
- for the incoming key. For use when the key content is already on disk
|
|
- and not being copied into place. -}
|
|
getViaTmpUnchecked :: Key -> (FilePath -> Annex Bool) -> Annex Bool
|
|
getViaTmpUnchecked = finishGetViaTmp (return True)
|
|
|
|
getViaTmpChecked :: Annex Bool -> Key -> (FilePath -> Annex Bool) -> Annex Bool
|
|
getViaTmpChecked check key action = do
|
|
tmp <- fromRepo $ gitAnnexTmpLocation key
|
|
|
|
-- Check that there is enough free disk space.
|
|
-- When the temp file already exists, count the space
|
|
-- it is using as free.
|
|
e <- liftIO $ doesFileExist tmp
|
|
alreadythere <- if e
|
|
then fromIntegral . fileSize <$> liftIO (getFileStatus tmp)
|
|
else return 0
|
|
ifM (checkDiskSpace Nothing key alreadythere)
|
|
( do
|
|
when e $ thawContent tmp
|
|
finishGetViaTmp check key action
|
|
, return False
|
|
)
|
|
|
|
finishGetViaTmp :: Annex Bool -> Key -> (FilePath -> Annex Bool) -> Annex Bool
|
|
finishGetViaTmp check key action = do
|
|
tmpfile <- prepTmp key
|
|
ifM (action tmpfile <&&> check)
|
|
( do
|
|
moveAnnex key tmpfile
|
|
logStatus key InfoPresent
|
|
return True
|
|
, do
|
|
-- the tmp file is left behind, in case caller wants
|
|
-- to resume its transfer
|
|
return False
|
|
)
|
|
|
|
prepTmp :: Key -> Annex FilePath
|
|
prepTmp key = do
|
|
tmp <- fromRepo $ gitAnnexTmpLocation key
|
|
createAnnexDirectory (parentDir tmp)
|
|
return tmp
|
|
|
|
{- Creates a temp file, runs an action on it, and cleans up the temp file. -}
|
|
withTmp :: Key -> (FilePath -> Annex a) -> Annex a
|
|
withTmp key action = do
|
|
tmp <- prepTmp key
|
|
res <- action tmp
|
|
liftIO $ nukeFile tmp
|
|
return res
|
|
|
|
{- Checks that there is disk space available to store a given key,
|
|
- in a destination (or the annex) printing a warning if not. -}
|
|
checkDiskSpace :: Maybe FilePath -> Key -> Integer -> Annex Bool
|
|
checkDiskSpace destination key alreadythere = do
|
|
reserve <- annexDiskReserve <$> Annex.getGitConfig
|
|
free <- liftIO . getDiskFree =<< dir
|
|
force <- Annex.getState Annex.force
|
|
case (free, keySize key) of
|
|
(Just have, Just need) -> do
|
|
let ok = (need + reserve <= have + alreadythere) || force
|
|
unless ok $ do
|
|
liftIO $ print (need, reserve, have, alreadythere)
|
|
needmorespace (need + reserve - have - alreadythere)
|
|
return ok
|
|
_ -> return True
|
|
where
|
|
dir = maybe (fromRepo gitAnnexDir) return destination
|
|
needmorespace n =
|
|
warning $ "not enough free space, need " ++
|
|
roughSize storageUnits True n ++
|
|
" more" ++ forcemsg
|
|
forcemsg = " (use --force to override this check or adjust annex.diskreserve)"
|
|
|
|
{- Moves a key's content into .git/annex/objects/
|
|
-
|
|
- In direct mode, moves it to the associated file, or files.
|
|
-
|
|
- What if the key there already has content? This could happen for
|
|
- various reasons; perhaps the same content is being annexed again.
|
|
- Perhaps there has been a hash collision generating the keys.
|
|
-
|
|
- The current strategy is to assume that in this case it's safe to delete
|
|
- one of the two copies of the content; and the one already in the annex
|
|
- is left there, assuming it's the original, canonical copy.
|
|
-
|
|
- I considered being more paranoid, and checking that both files had
|
|
- the same content. Decided against it because A) users explicitly choose
|
|
- a backend based on its hashing properties and so if they're dealing
|
|
- with colliding files it's their own fault and B) adding such a check
|
|
- would not catch all cases of colliding keys. For example, perhaps
|
|
- a remote has a key; if it's then added again with different content then
|
|
- the overall system now has two different peices of content for that
|
|
- key, and one of them will probably get deleted later. So, adding the
|
|
- check here would only raise expectations that git-annex cannot truely
|
|
- meet.
|
|
-}
|
|
moveAnnex :: Key -> FilePath -> Annex ()
|
|
moveAnnex key src = withObjectLoc key storeobject storedirect
|
|
where
|
|
storeobject dest = do
|
|
ifM (liftIO $ doesFileExist dest)
|
|
( liftIO $ removeFile src
|
|
, do
|
|
createContentDir dest
|
|
liftIO $ moveFile src dest
|
|
freezeContent dest
|
|
freezeContentDir dest
|
|
)
|
|
storedirect fs = storedirect' =<< liftIO (filterM validsymlink fs)
|
|
|
|
validsymlink f = do
|
|
tl <- tryIO $ readSymbolicLink f
|
|
return $ case tl of
|
|
Right l
|
|
| isLinkToAnnex l ->
|
|
Just key == fileKey (takeFileName l)
|
|
_ -> False
|
|
|
|
storedirect' [] = storeobject =<< inRepo (gitAnnexLocation key)
|
|
storedirect' (dest:fs) = do
|
|
updateCache key src
|
|
thawContent src
|
|
liftIO $ replaceFile dest $ moveFile src
|
|
liftIO $ forM_ fs $ \f -> replaceFile f $
|
|
void . copyFileExternal dest
|
|
|
|
{- Replaces any existing file with a new version, by running an action.
|
|
- First, makes sure the file is deleted. Or, if it didn't already exist,
|
|
- makes sure the parent directory exists. -}
|
|
replaceFile :: FilePath -> (FilePath -> IO ()) -> IO ()
|
|
replaceFile file a = do
|
|
r <- tryIO $ removeFile file
|
|
case r of
|
|
Left _ -> createDirectoryIfMissing True (parentDir file)
|
|
_ -> noop
|
|
a file
|
|
|
|
{- Runs an action to transfer an object's content.
|
|
-
|
|
- In direct mode, it's possible for the file to change as it's being sent.
|
|
- If this happens, runs the rollback action and returns False. The
|
|
- rollback action should remove the data that was transferred.
|
|
-}
|
|
sendAnnex :: Key -> (Annex ()) -> (FilePath -> Annex Bool) -> Annex Bool
|
|
sendAnnex key rollback sendobject = go =<< prepSendAnnex key
|
|
where
|
|
go Nothing = return False
|
|
go (Just (f, checksuccess)) = do
|
|
r <- sendobject f
|
|
ifM checksuccess
|
|
( return r
|
|
, do
|
|
rollback
|
|
return False
|
|
)
|
|
|
|
{- Returns a file that contains an object's content,
|
|
- and an check to run after the transfer is complete.
|
|
-
|
|
- In direct mode, it's possible for the file to change as it's being sent,
|
|
- and the check detects this case and returns False.
|
|
-}
|
|
prepSendAnnex :: Key -> Annex (Maybe (FilePath, Annex Bool))
|
|
prepSendAnnex key = withObjectLoc key indirect direct
|
|
where
|
|
indirect f = return $ Just (f, return True)
|
|
direct [] = return Nothing
|
|
direct (f:fs) = do
|
|
cache <- recordedCache key
|
|
-- check that we have a good file
|
|
ifM (compareCache f cache)
|
|
( return $ Just (f, compareCache f cache)
|
|
, direct fs
|
|
)
|
|
|
|
{- Performs an action, passing it the location to use for a key's content.
|
|
-
|
|
- In direct mode, the associated files will be passed. But, if there are
|
|
- no associated files for a key, the indirect mode action will be
|
|
- performed instead. -}
|
|
withObjectLoc :: Key -> (FilePath -> Annex a) -> ([FilePath] -> Annex a) -> Annex a
|
|
withObjectLoc key indirect direct = ifM isDirect
|
|
( do
|
|
fs <- associatedFiles key
|
|
if null fs
|
|
then goindirect
|
|
else direct fs
|
|
, goindirect
|
|
)
|
|
where
|
|
goindirect = indirect =<< inRepo (gitAnnexLocation key)
|
|
|
|
cleanObjectLoc :: Key -> Annex ()
|
|
cleanObjectLoc key = do
|
|
file <- inRepo $ gitAnnexLocation key
|
|
liftIO $ do
|
|
let dir = parentDir file
|
|
void $ catchMaybeIO $ do
|
|
allowWrite dir
|
|
removeDirectoryRecursive dir
|
|
removeparents dir (2 :: Int)
|
|
where
|
|
removeparents _ 0 = noop
|
|
removeparents file n = do
|
|
let dir = parentDir file
|
|
maybe noop (const $ removeparents dir (n-1))
|
|
<=< catchMaybeIO $ removeDirectory dir
|
|
|
|
{- Removes a key's file from .git/annex/objects/
|
|
-
|
|
- In direct mode, deletes the associated files or files, and replaces
|
|
- them with symlinks. -}
|
|
removeAnnex :: Key -> Annex ()
|
|
removeAnnex key = withObjectLoc key remove removedirect
|
|
where
|
|
remove file = do
|
|
liftIO $ do
|
|
allowWrite $ parentDir file
|
|
removeFile file
|
|
cleanObjectLoc key
|
|
removedirect fs = do
|
|
cache <- recordedCache key
|
|
mapM_ (resetfile cache) fs
|
|
cleanObjectLoc key
|
|
resetfile cache f = whenM (compareCache f cache) $ do
|
|
l <- calcGitLink f key
|
|
top <- fromRepo Git.repoPath
|
|
cwd <- liftIO getCurrentDirectory
|
|
let top' = fromMaybe top $ absNormPath cwd top
|
|
let l' = relPathDirToFile top' (fromMaybe l $ absNormPath top' l)
|
|
liftIO $ replaceFile f $ const $
|
|
createSymbolicLink l' f
|
|
|
|
{- Moves a key's file out of .git/annex/objects/ -}
|
|
fromAnnex :: Key -> FilePath -> Annex ()
|
|
fromAnnex key dest = do
|
|
file <- inRepo $ gitAnnexLocation key
|
|
liftIO $ allowWrite $ parentDir file
|
|
thawContent file
|
|
liftIO $ moveFile file dest
|
|
cleanObjectLoc key
|
|
|
|
{- Moves a key out of .git/annex/objects/ into .git/annex/bad, and
|
|
- returns the file it was moved to. -}
|
|
moveBad :: Key -> Annex FilePath
|
|
moveBad key = do
|
|
src <- inRepo $ gitAnnexLocation key
|
|
bad <- fromRepo gitAnnexBadDir
|
|
let dest = bad </> takeFileName src
|
|
createAnnexDirectory (parentDir dest)
|
|
liftIO $ do
|
|
allowWrite (parentDir src)
|
|
moveFile src dest
|
|
cleanObjectLoc key
|
|
logStatus key InfoMissing
|
|
return dest
|
|
|
|
{- List of keys whose content exists in .git/annex/objects/ -}
|
|
getKeysPresent :: Annex [Key]
|
|
getKeysPresent = liftIO . traverse (2 :: Int) =<< fromRepo gitAnnexObjectDir
|
|
where
|
|
traverse depth dir = do
|
|
contents <- catchDefaultIO [] (dirContents dir)
|
|
if depth == 0
|
|
then continue (mapMaybe (fileKey . takeFileName) contents) []
|
|
else do
|
|
let deeper = traverse (depth - 1)
|
|
continue [] (map deeper contents)
|
|
continue keys [] = return keys
|
|
continue keys (a:as) = do
|
|
{- Force lazy traversal with unsafeInterleaveIO. -}
|
|
morekeys <- unsafeInterleaveIO a
|
|
continue (morekeys++keys) as
|
|
|
|
{- Things to do to record changes to content when shutting down.
|
|
-
|
|
- It's acceptable to avoid committing changes to the branch,
|
|
- especially if performing a short-lived action.
|
|
-}
|
|
saveState :: Bool -> Annex ()
|
|
saveState nocommit = doSideAction $ do
|
|
Annex.Queue.flush
|
|
unless nocommit $
|
|
whenM (annexAlwaysCommit <$> Annex.getGitConfig) $
|
|
Annex.Branch.commit "update"
|
|
|
|
{- Downloads content from any of a list of urls. -}
|
|
downloadUrl :: [Url.URLString] -> FilePath -> Annex Bool
|
|
downloadUrl urls file = do
|
|
o <- map Param . annexWebOptions <$> Annex.getGitConfig
|
|
headers <- getHttpHeaders
|
|
liftIO $ anyM (\u -> Url.download u headers o file) urls
|
|
|
|
{- Copies a key's content, when present, to a temp file.
|
|
- This is used to speed up some rsyncs. -}
|
|
preseedTmp :: Key -> FilePath -> Annex Bool
|
|
preseedTmp key file = go =<< inAnnex key
|
|
where
|
|
go False = return False
|
|
go True = do
|
|
ok <- copy
|
|
when ok $ thawContent file
|
|
return ok
|
|
copy = ifM (liftIO $ doesFileExist file)
|
|
( return True
|
|
, do
|
|
s <- inRepo $ gitAnnexLocation key
|
|
liftIO $ copyFileExternal s file
|
|
)
|
|
|
|
{- Blocks writing to an annexed file. The file is made unwritable
|
|
- to avoid accidental edits. core.sharedRepository may change
|
|
- who can read it. -}
|
|
freezeContent :: FilePath -> Annex ()
|
|
freezeContent file = liftIO . go =<< fromRepo getSharedRepository
|
|
where
|
|
go GroupShared = modifyFileMode file $
|
|
removeModes writeModes .
|
|
addModes [ownerReadMode, groupReadMode]
|
|
go AllShared = modifyFileMode file $
|
|
removeModes writeModes .
|
|
addModes readModes
|
|
go _ = preventWrite file
|
|
|
|
{- Allows writing to an annexed file that freezeContent was called on
|
|
- before. -}
|
|
thawContent :: FilePath -> Annex ()
|
|
thawContent file = liftIO . go =<< fromRepo getSharedRepository
|
|
where
|
|
go GroupShared = groupWriteRead file
|
|
go AllShared = groupWriteRead file
|
|
go _ = allowWrite file
|