{- git repository recovery - - Copyright 2013-2014 Joey Hess - - Licensed under the GNU AGPL version 3 or higher. -} {-# LANGUAGE OverloadedStrings #-} module Git.Repair ( runRepair, runRepairOf, removeBadBranches, successfulRepair, cleanCorruptObjects, resetLocalBranches, checkIndex, checkIndexFast, missingIndex, emptyGoodCommits, isTrackingBranch, ) where import Common import Git import Git.Command import Git.Objects import Git.Sha import Git.Types import Git.Fsck import Git.Index import qualified Git.Config as Config import qualified Git.Construct as Construct import qualified Git.LsTree as LsTree import qualified Git.LsFiles as LsFiles import qualified Git.Ref as Ref import qualified Git.RefLog as RefLog import qualified Git.UpdateIndex as UpdateIndex import qualified Git.Branch as Branch import Utility.Directory.Create import Utility.Tmp.Dir import Utility.Rsync import Utility.FileMode import qualified Utility.RawFilePath as R import qualified Data.Set as S import qualified Data.ByteString.Lazy as L import qualified System.FilePath.ByteString as P {- Given a set of bad objects found by git fsck, which may not - be complete, finds and removes all corrupt objects. -} cleanCorruptObjects :: FsckResults -> Repo -> IO () cleanCorruptObjects fsckresults r = do void $ explodePacks r mapM_ removeLoose (S.toList $ knownMissing fsckresults) mapM_ removeBad =<< listLooseObjectShas r where removeLoose s = removeWhenExistsWith R.removeLink (looseObjectFile r s) removeBad s = do void $ tryIO $ allowRead $ looseObjectFile r s whenM (isMissing s r) $ removeLoose s {- Explodes all pack files, and deletes them. - - First moves all pack files to a temp dir, before unpacking them each in - turn. - - This is because unpack-objects will not unpack a pack file if it's in the - git repo. - - Also, this prevents unpack-objects from possibly looking at corrupt - pack files to see if they contain an object, while unpacking a - non-corrupt pack file. -} explodePacks :: Repo -> IO Bool explodePacks r = go =<< listPackFiles r where go [] = return False go packs = withTmpDir "packs" $ \tmpdir -> do putStrLn "Unpacking all pack files." forM_ packs $ \packfile -> do moveFile packfile (tmpdir takeFileName packfile) removeWhenExistsWith R.removeLink (packIdxFile (toRawFilePath packfile)) forM_ packs $ \packfile -> do let tmp = tmpdir takeFileName packfile allowRead (toRawFilePath tmp) -- May fail, if pack file is corrupt. void $ tryIO $ pipeWrite [Param "unpack-objects", Param "-r"] r $ \h -> L.hPut h =<< L.readFile tmp return True {- Try to retrieve a set of missing objects, from the remotes of a - repository. Returns any that could not be retreived. - - If another clone of the repository exists locally, which might not be a - remote of the repo being repaired, its path can be passed as a reference - repository. -} retrieveMissingObjects :: FsckResults -> Maybe FilePath -> Repo -> IO FsckResults retrieveMissingObjects missing referencerepo r | not (foundBroken missing) = return missing | otherwise = withTmpDir "tmprepo" $ \tmpdir -> do unlessM (boolSystem "git" [Param "init", File tmpdir]) $ error $ "failed to create temp repository in " ++ tmpdir tmpr <- Config.read =<< Construct.fromPath (toRawFilePath tmpdir) rs <- Construct.fromRemotes r stillmissing <- pullremotes tmpr rs fetchrefstags missing if S.null (knownMissing stillmissing) then return stillmissing else pullremotes tmpr rs fetchallrefs stillmissing where pullremotes tmpr [] fetchrefs stillmissing = case referencerepo of Nothing -> return stillmissing Just p -> ifM (fetchfrom p fetchrefs tmpr) ( do void $ explodePacks tmpr void $ copyObjects tmpr r case stillmissing of FsckFailed -> return $ FsckFailed FsckFoundMissing s t -> FsckFoundMissing <$> findMissing (S.toList s) r <*> pure t , return stillmissing ) pullremotes tmpr (rmt:rmts) fetchrefs ms | not (foundBroken ms) = return ms | otherwise = case remoteName rmt of Just n -> do putStrLn $ "Trying to recover missing objects from remote " ++ n ++ "." ifM (fetchfrom n fetchrefs tmpr) ( do void $ explodePacks tmpr void $ copyObjects tmpr r case ms of FsckFailed -> pullremotes tmpr rmts fetchrefs ms FsckFoundMissing s t -> do stillmissing <- findMissing (S.toList s) r pullremotes tmpr rmts fetchrefs (FsckFoundMissing stillmissing t) , pullremotes tmpr rmts fetchrefs ms ) Nothing -> pullremotes tmpr rmts fetchrefs ms fetchfrom loc ps fetchr = runBool ps' fetchr' where ps' = [ Param "fetch" , Param loc , Param "--force" , Param "--update-head-ok" , Param "--quiet" ] ++ ps fetchr' = fetchr { gitGlobalOpts = gitGlobalOpts fetchr ++ nogc } nogc = [ Param "-c", Param "gc.auto=0" ] -- fetch refs and tags fetchrefstags = [ Param "+refs/heads/*:refs/heads/*", Param "--tags"] -- Fetch all available refs (more likely to fail, -- as the remote may have refs it refuses to send). fetchallrefs = [ Param "+*:*" ] {- Copies all objects from the src repository to the dest repository. - This is done using rsync, so it copies all missing objects, and all - objects they rely on. -} copyObjects :: Repo -> Repo -> IO Bool copyObjects srcr destr = rsync [ Param "-qr" , File $ addTrailingPathSeparator $ fromRawFilePath $ objectsDir srcr , File $ addTrailingPathSeparator $ fromRawFilePath $ objectsDir destr ] {- To deal with missing objects that cannot be recovered, resets any - local branches to point to an old commit before the missing - objects. Returns all branches that were changed, and deleted. -} resetLocalBranches :: MissingObjects -> GoodCommits -> Repo -> IO ([Branch], [Branch], GoodCommits) resetLocalBranches missing goodcommits r = go [] [] goodcommits =<< filter islocalbranch <$> getAllRefs r where islocalbranch b = "refs/heads/" `isPrefixOf` fromRef b go changed deleted gcs [] = return (changed, deleted, gcs) go changed deleted gcs (b:bs) = do (mc, gcs') <- findUncorruptedCommit missing gcs b r case mc of Just c | c == b -> go changed deleted gcs' bs | otherwise -> do reset b c go (b:changed) deleted gcs' bs Nothing -> do nukeBranchRef b r go changed (b:deleted) gcs' bs reset b c = do nukeBranchRef b r void $ runBool [ Param "branch" , Param (fromRef $ Ref.base b) , Param (fromRef c) ] r isTrackingBranch :: Ref -> Bool isTrackingBranch b = "refs/remotes/" `isPrefixOf` fromRef b {- To deal with missing objects that cannot be recovered, removes - any branches (filtered by a predicate) that reference them - Returns a list of all removed branches. -} removeBadBranches :: (Ref -> Bool) -> Repo -> IO [Branch] removeBadBranches removablebranch r = fst <$> removeBadBranches' removablebranch S.empty emptyGoodCommits r removeBadBranches' :: (Ref -> Bool) -> MissingObjects -> GoodCommits -> Repo -> IO ([Branch], GoodCommits) removeBadBranches' removablebranch missing goodcommits r = go [] goodcommits =<< filter removablebranch <$> getAllRefs r where go removed gcs [] = return (removed, gcs) go removed gcs (b:bs) = do (ok, gcs') <- verifyCommit missing gcs b r if ok then go removed gcs' bs else do nukeBranchRef b r go (b:removed) gcs' bs badBranches :: MissingObjects -> Repo -> IO [Branch] badBranches missing r = filterM isbad =<< getAllRefs r where isbad b = not . fst <$> verifyCommit missing emptyGoodCommits b r {- Gets all refs, including ones that are corrupt. - git show-ref does not output refs to commits that are directly - corrupted, so it is not used. - - Relies on packed refs being exploded before it's called. -} getAllRefs :: Repo -> IO [Ref] getAllRefs r = getAllRefs' (fromRawFilePath (localGitDir r) "refs") getAllRefs' :: FilePath -> IO [Ref] getAllRefs' refdir = do let topsegs = length (splitPath refdir) - 1 let toref = Ref . encodeBS' . joinPath . drop topsegs . splitPath map toref <$> dirContentsRecursive refdir explodePackedRefsFile :: Repo -> IO () explodePackedRefsFile r = do let f = packedRefsFile r let f' = toRawFilePath f whenM (doesFileExist f) $ do rs <- mapMaybe parsePacked . lines <$> catchDefaultIO "" (safeReadFile f') forM_ rs makeref removeWhenExistsWith R.removeLink f' where makeref (sha, ref) = do let gitd = localGitDir r let dest = gitd P. fromRef' ref let dest' = fromRawFilePath dest createDirectoryUnder gitd (parentDir dest) unlessM (doesFileExist dest') $ writeFile dest' (fromRef sha) packedRefsFile :: Repo -> FilePath packedRefsFile r = fromRawFilePath (localGitDir r) "packed-refs" parsePacked :: String -> Maybe (Sha, Ref) parsePacked l = case words l of (sha:ref:[]) | isJust (extractSha (encodeBS' sha)) && Ref.legal True ref -> Just (Ref (encodeBS' sha), Ref (encodeBS' ref)) _ -> Nothing {- git-branch -d cannot be used to remove a branch that is directly - pointing to a corrupt commit. -} nukeBranchRef :: Branch -> Repo -> IO () nukeBranchRef b r = removeWhenExistsWith R.removeLink $ localGitDir r P. fromRef' b {- Finds the most recent commit to a branch that does not need any - of the missing objects. If the input branch is good as-is, returns it. - Otherwise, tries to traverse the commits in the branch to find one - that is ok. That might fail, if one of them is corrupt, or if an object - at the root of the branch is missing. Finally, looks for an old version - of the branch from the reflog. -} findUncorruptedCommit :: MissingObjects -> GoodCommits -> Branch -> Repo -> IO (Maybe Sha, GoodCommits) findUncorruptedCommit missing goodcommits branch r = do (ok, goodcommits') <- verifyCommit missing goodcommits branch r if ok then return (Just branch, goodcommits') else do (ls, cleanup) <- pipeNullSplit' [ Param "log" , Param "-z" , Param "--format=%H" , Param (fromRef branch) ] r let branchshas = catMaybes $ map extractSha ls reflogshas <- RefLog.get branch r -- XXX Could try a bit harder here, and look -- for uncorrupted old commits in branches in the -- reflog. cleanup `after` findfirst goodcommits (branchshas ++ reflogshas) where findfirst gcs [] = return (Nothing, gcs) findfirst gcs (c:cs) = do (ok, gcs') <- verifyCommit missing gcs c r if ok then return (Just c, gcs') else findfirst gcs' cs {- Verifies that none of the missing objects in the set are used by - the commit. Also adds to a set of commit shas that have been verified to - be good, which can be passed into subsequent calls to avoid - redundant work when eg, chasing down branches to find the first - uncorrupted commit. -} verifyCommit :: MissingObjects -> GoodCommits -> Sha -> Repo -> IO (Bool, GoodCommits) verifyCommit missing goodcommits commit r | checkGoodCommit commit goodcommits = return (True, goodcommits) | otherwise = do (ls, cleanup) <- pipeNullSplit [ Param "log" , Param "-z" , Param "--format=%H %T" , Param (fromRef commit) ] r let committrees = map (parse . decodeBL) ls if any isNothing committrees || null committrees then do void cleanup return (False, goodcommits) else do let cts = catMaybes committrees ifM (cleanup <&&> check cts) ( return (True, addGoodCommits (map fst cts) goodcommits) , return (False, goodcommits) ) where parse l = case words l of (commitsha:treesha:[]) -> (,) <$> extractSha (encodeBS' commitsha) <*> extractSha (encodeBS' treesha) _ -> Nothing check [] = return True check ((c, t):rest) | checkGoodCommit c goodcommits = return True | otherwise = verifyTree missing t r <&&> check rest {- Verifies that a tree is good, including all trees and blobs - referenced by it. -} verifyTree :: MissingObjects -> Sha -> Repo -> IO Bool verifyTree missing treesha r | S.member treesha missing = return False | otherwise = do let nolong = LsTree.LsTreeLong False (ls, cleanup) <- pipeNullSplit (LsTree.lsTreeParams LsTree.LsTreeRecursive nolong treesha []) r let objshas = mapMaybe (LsTree.sha <$$> eitherToMaybe . LsTree.parseLsTree nolong) ls if any (`S.member` missing) objshas then do void cleanup return False -- as long as ls-tree succeeded, we're good else cleanup {- Checks that the index file only refers to objects that are not missing, - and is not itself corrupt. Note that a missing index file is not - considered a problem (repo may be new). -} checkIndex :: Repo -> IO Bool checkIndex r = do (bad, _good, cleanup) <- partitionIndex r if null bad then cleanup else do void cleanup return False {- Does not check every object the index refers to, but only that the index - itself is not corrupt. -} checkIndexFast :: Repo -> IO Bool checkIndexFast r = do (indexcontents, cleanup) <- LsFiles.stagedDetails [repoPath r] r length indexcontents `seq` cleanup missingIndex :: Repo -> IO Bool missingIndex r = not <$> doesFileExist (fromRawFilePath (localGitDir r) "index") {- Finds missing and ok files staged in the index. -} partitionIndex :: Repo -> IO ([LsFiles.StagedDetails], [LsFiles.StagedDetails], IO Bool) partitionIndex r = do (indexcontents, cleanup) <- LsFiles.stagedDetails [repoPath r] r l <- forM indexcontents $ \i@(_file, sha, _mode, _stagenum) -> (,) <$> isMissing sha r <*> pure i let (bad, good) = partition fst l return (map snd bad, map snd good, cleanup) {- Rewrites the index file, removing from it any files whose blobs are - missing. Returns the list of affected files. -} rewriteIndex :: Repo -> IO [FilePath] rewriteIndex r | repoIsLocalBare r = return [] | otherwise = do (bad, good, cleanup) <- partitionIndex r unless (null bad) $ do removeWhenExistsWith R.removeLink (indexFile r) UpdateIndex.streamUpdateIndex r =<< (catMaybes <$> mapM reinject good) void cleanup return $ map (\(file,_, _, _) -> fromRawFilePath file) bad where reinject (file, sha, mode, _) = case toTreeItemType mode of Nothing -> return Nothing Just treeitemtype -> Just <$> UpdateIndex.stageFile sha treeitemtype (fromRawFilePath file) r newtype GoodCommits = GoodCommits (S.Set Sha) emptyGoodCommits :: GoodCommits emptyGoodCommits = GoodCommits S.empty checkGoodCommit :: Sha -> GoodCommits -> Bool checkGoodCommit sha (GoodCommits s) = S.member sha s addGoodCommits :: [Sha] -> GoodCommits -> GoodCommits addGoodCommits shas (GoodCommits s) = GoodCommits $ S.union s (S.fromList shas) displayList :: [String] -> String -> IO () displayList items header | null items = return () | otherwise = do putStrLn header putStr $ unlines $ map (\i -> "\t" ++ i) truncateditems where numitems = length items truncateditems | numitems > 10 = take 10 items ++ ["(and " ++ show (numitems - 10) ++ " more)"] | otherwise = items {- Fix problems that would prevent repair from working at all - - A missing or corrupt .git/HEAD makes git not treat the repository as a - git repo. If there is a git repo in a parent directory, it may move up - the tree and use that one instead. So, cannot use `git show-ref HEAD` to - test it. - - Explode the packed refs file, to simplify dealing with refs, and because - fsck can complain about bad refs in it. -} preRepair :: Repo -> IO () preRepair g = do unlessM (validhead <$> catchDefaultIO "" (safeReadFile headfile)) $ do removeWhenExistsWith R.removeLink headfile writeFile (fromRawFilePath headfile) "ref: refs/heads/master" explodePackedRefsFile g unless (repoIsLocalBare g) $ void $ tryIO $ allowWrite $ indexFile g where headfile = localGitDir g P. "HEAD" validhead s = "ref: refs/" `isPrefixOf` s || isJust (extractSha (encodeBS' s)) {- Put it all together. -} runRepair :: (Ref -> Bool) -> Bool -> Repo -> IO (Bool, [Branch]) runRepair removablebranch forced g = do preRepair g putStrLn "Running git fsck ..." fsckresult <- findBroken False g if foundBroken fsckresult then do putStrLn "Fsck found problems, attempting repair." runRepair' removablebranch fsckresult forced Nothing g else do putStrLn "Fsck found no problems. Checking for broken branches." bad <- badBranches S.empty g if null bad then do putStrLn "No problems found." return (True, []) else do putStrLn "Found problems, attempting repair." runRepair' removablebranch fsckresult forced Nothing g runRepairOf :: FsckResults -> (Ref -> Bool) -> Bool -> Maybe FilePath -> Repo -> IO (Bool, [Branch]) runRepairOf fsckresult removablebranch forced referencerepo g = do preRepair g runRepair' removablebranch fsckresult forced referencerepo g runRepair' :: (Ref -> Bool) -> FsckResults -> Bool -> Maybe FilePath -> Repo -> IO (Bool, [Branch]) runRepair' removablebranch fsckresult forced referencerepo g = do cleanCorruptObjects fsckresult g missing <- findBroken False g stillmissing <- retrieveMissingObjects missing referencerepo g case stillmissing of FsckFoundMissing s t | S.null s -> if repoIsLocalBare g then checkbadbranches s else ifM (checkIndex g) ( checkbadbranches s , do putStrLn "No missing objects found, but the index file is corrupt!" if forced then corruptedindex else needforce ) | otherwise -> if forced then ifM (checkIndex g) ( forcerepair s t , corruptedindex ) else do putStrLn $ unwords [ show (S.size s) , "missing objects could not be recovered!" ] unsuccessfulfinish FsckFailed | forced -> ifM (pure (repoIsLocalBare g) <||> checkIndex g) ( do cleanCorruptObjects FsckFailed g stillmissing' <- findBroken False g case stillmissing' of FsckFailed -> return (False, []) FsckFoundMissing s t -> forcerepair s t , corruptedindex ) | otherwise -> unsuccessfulfinish where repairbranches missing = do (removedbranches, goodcommits) <- removeBadBranches' removablebranch missing emptyGoodCommits g let remotebranches = filter isTrackingBranch removedbranches unless (null remotebranches) $ putStrLn $ unwords [ "Removed" , show (length remotebranches) , "remote tracking branches that referred to missing objects." ] (resetbranches, deletedbranches, _) <- resetLocalBranches missing goodcommits g displayList (map fromRef resetbranches) "Reset these local branches to old versions before the missing objects were committed:" displayList (map fromRef deletedbranches) "Deleted these local branches, which could not be recovered due to missing objects:" return (resetbranches ++ deletedbranches) checkbadbranches missing = do bad <- badBranches missing g case (null bad, forced) of (True, _) -> successfulfinish [] (False, False) -> do displayList (map fromRef bad) "Some git branches refer to missing objects:" unsuccessfulfinish (False, True) -> successfulfinish =<< repairbranches missing forcerepair missing fscktruncated = do modifiedbranches <- repairbranches missing deindexedfiles <- rewriteIndex g displayList deindexedfiles "Removed these missing files from the index. You should look at what files are present in your working tree and git add them back to the index when appropriate." -- When the fsck results were truncated, try -- fscking again, and as long as different -- missing objects are found, continue -- the repair process. if fscktruncated then do fsckresult' <- findBroken False g case fsckresult' of FsckFailed -> do putStrLn "git fsck is failing" return (False, modifiedbranches) FsckFoundMissing s _ | S.null s -> successfulfinish modifiedbranches | S.null (s `S.difference` missing) -> do putStrLn $ unwords [ show (S.size s) , "missing objects could not be recovered!" ] return (False, modifiedbranches) | otherwise -> do (ok, modifiedbranches') <- runRepairOf fsckresult' removablebranch forced referencerepo g return (ok, modifiedbranches++modifiedbranches') else successfulfinish modifiedbranches corruptedindex = do removeWhenExistsWith R.removeLink (indexFile g) -- The corrupted index can prevent fsck from finding other -- problems, so re-run repair. fsckresult' <- findBroken False g result <- runRepairOf fsckresult' removablebranch forced referencerepo g putStrLn "Removed the corrupted index file. You should look at what files are present in your working tree and git add them back to the index when appropriate." return result successfulfinish modifiedbranches | null modifiedbranches = do mapM_ putStrLn [ "Successfully recovered repository!" , "You should run \"git fsck\" to make sure, but it looks like everything was recovered ok." ] return (True, modifiedbranches) | otherwise = do unless (repoIsLocalBare g) $ do mcurr <- Branch.currentUnsafe g case mcurr of Nothing -> return () Just curr -> when (any (== curr) modifiedbranches) $ do putStrLn $ unwords [ "You currently have" , fromRef curr , "checked out. You may have staged changes in the index that can be committed to recover the lost state of this branch!" ] putStrLn "Successfully recovered repository!" putStrLn "Please carefully check that the changes mentioned above are ok.." return (True, modifiedbranches) unsuccessfulfinish = do if repoIsLocalBare g then do putStrLn "If you have a clone of this bare repository, you should add it as a remote of this repository, and retry." putStrLn "If there are no clones of this repository, you can instead retry with the --force parameter to force recovery to a possibly usable state." return (False, []) else needforce needforce = do putStrLn "To force a recovery to a usable state, retry with the --force parameter." return (False, []) successfulRepair :: (Bool, [Branch]) -> Bool successfulRepair = fst safeReadFile :: RawFilePath -> IO String safeReadFile f = do allowRead f readFileStrict (fromRawFilePath f)