Normally a git repository is not treated as a special remote, but as a git remote of the normal kind. Two exceptions to that are [[git-lfs]] and [[gcrypt]] special remotes. But it is possible to register a git repository as a special remote. git-annex and git will use the remote the same as any normal git remote, but its url will be recorded in the repository. One benefit of doing this is it allows [[git-annex init|git-annex-init]] to autoenable the remote. First you need a regular git remote with the url that you want to use for the special remote. git remote add tmpremote ssh://... Then, to set up the special remote: git annex initremote myremote type=git location=ssh://... autoenable=true The location must be the same url as the existing git remote. Now `git annex init` in each clone of the repository will autoenable myremote. Note that the name of the git remote (`tmpremote` above) has to be different than the name you later use for the special remote, since [[git-annex initremote|git-annex-initremote]] will refuse to use the name of an existing remote. To work around that, you could finish by removing `tmpremote` and enable the special remote: git remote remove tmpremote git annex enableremote myremote This only works for git repositories that have a git-annex uuid set, because git-annex thinks about special remotes in terms of their uuid. So it cannot be used with a git remote hosted somewhere that does not have git-annex installed.