Commit graph

46745 commits

Author SHA1 Message Date
jasonb@ab4484d9961a46440958fa1a528e0fc435599057
b0d4fe5dd0 2025-03-07 04:13:24 +00:00
yarikoptic
27ef1a47df initial report on slow thaw 2025-03-06 22:40:35 +00:00
Joey Hess
1f59545ad0
improve 2025-03-06 14:54:05 -04:00
Joey Hess
138421449e
add git-annex-compute-imageconvert 2025-03-06 14:47:22 -04:00
Joey Hess
825a648670
prefix output with ./ in example 2025-03-06 14:42:07 -04:00
Joey Hess
b835c8c937
no longer a draft 2025-03-06 14:29:07 -04:00
Joey Hess
6f78341fbf
Merge branch 'compute' 2025-03-06 14:23:58 -04:00
Joey Hess
e952753846
preparing to merge compute 2025-03-06 14:22:45 -04:00
Joey Hess
4979df54d5
update 2025-03-06 13:34:51 -04:00
jerome.charousset@86fd8ed1bf55902989d7e70a11c38cb3a444b72d
203a730e28 Added a comment: Special use case for Scientific application 2025-03-06 17:02:22 +00:00
Joey Hess
1e9bb30c4e
update 2025-03-06 12:52:12 -04:00
Joey Hess
c6c6e2632d
avoid unncessary git-annex branch changes for recompute and addcomputed 2025-03-06 12:41:30 -04:00
Joey Hess
ccc454a791
computation progress display 2025-03-05 13:46:06 -04:00
matrss
629ab3f836 Added a comment 2025-03-05 15:40:44 +00:00
bpoldrack
9f045ed494 Added a comment 2025-03-05 14:23:57 +00:00
msz
62ab16aef3 Tag copy_file_range todo with projects/INM7 (came from our cluster) 2025-03-05 13:35:19 +00:00
msz
f1efad3b94 Added a comment: DataLad exploration of the compute on demand space 2025-03-05 13:31:41 +00:00
msz
e4232791dd Added a comment 2025-03-05 11:27:39 +00:00
kenta
5137cb6d16 filled out bug description 2025-03-05 00:00:19 +00:00
Joey Hess
4a4a614b0d
OsPath build fixes 2025-03-04 15:50:15 -04:00
Joey Hess
17ce1b4e7b
mark unused parameter
While unused, it seems to make sense to keep it, since it explains what
the function is doing.
2025-03-04 15:46:30 -04:00
Joey Hess
2e77c2b762
update todo 2025-03-04 15:02:02 -04:00
Joey Hess
a2fc471e14
safer git sha object filename
Rather than use the filename provided by INPUT, which could come from user
input, and so could be something that looks like a dashed parameter,
use a .git/object/<sha> filename.

This avoids user input passing through INPUT and back out, with the file
path then passed to a command, which could do something unexpected with
a dashed parameter, or other special parameter.

Added a note in the design about being careful of passing user input to
commands. They still have to be careful of that in general, just not in
this case.
2025-03-04 14:54:13 -04:00
Joey Hess
1ee4d018f3
cycle detection 2025-03-04 14:06:55 -04:00
Joey Hess
51538fa0a8
improve error message when unable to get an input file
In this case, the compute program is run the same as if addcomputed --fast
were used, so it should succeed, without outputting a computed file.

computeInputsUnavailable is in ComputeState for simplicity, but it is
not serialized with the rest of the ComputeState.
2025-03-04 13:13:18 -04:00
Joey Hess
f4e0d6a043
update location log after getting input file from remote 2025-03-04 12:51:38 -04:00
Joey Hess
4b6fabae65
better wording
Avoids this contradiction:

	(Auto enabling special remote foo...)

	  Not enabling compute special remote c2 because [..]
2025-03-04 12:43:50 -04:00
Joey Hess
4e6324131d
compute remote: get input files from other remotes
This needed some refactoring to avoid cycles, since Remote.Compute
cannot import Remote.List. Instead, it uses Annex.remotes. Which must be
populated by something else, but we know it has been, because something
is using Remote.Compute, which it must have found in the remote list,
which populates that.

In Remote.Compute, keyPossibilities' is called with all loggedLocations,
without the trustExclude DeadTrusted that keyLocations does. There is
another cycle there. This may be a problem if a dead repository is still
a remote.

This is missing cycle prevention, and it's certianly possible to make 2
files in the compute remote co-depend on one-another. Hopefully not in a
real world situation, but it an attacker could certainly do it. Cycle
prevention will need to be added to this.
2025-03-04 11:06:58 -04:00
Joey Hess
b395bd4f56
move showOutput into compute remote 2025-03-04 10:02:33 -04:00
Joey Hess
52f51d065a
rename config to annex.security.allowed-compute-programs
And require for enable as well as autoenable.

It seemed asking for trouble for `git-annex enable foo` to use whatever
compute program is stored in the git config, without verifying that the
user wants that program to be used.

Note that it would be good to allow `git-annex enable foo program=...`
to be used without the program being in the git config. Not implemented yet
though.
2025-03-03 16:12:03 -04:00
Joey Hess
f32d2aecce
autoenable security for compute special remote
Added annex.security.autoenable-compute-programs and only allow
autoenabling special remotes that use compute programs on that list.

The reason this is needed is a user might have some compute programs
that are less safe to use than others. They might want to use an unsafe
one only with one repository, where they are the only committer or other
committers are trusted. They might be ok with others being used by any
repository, and if so they can add them to the list.

Another reason would be a user who has installed a compute program by
accident. Eg, it might be included with git-annex at some point, or
pulled in by some dependency. That user doesn't necessarily want that
compute program to be used in an autoenabled special remote.
2025-03-03 15:52:56 -04:00
Joey Hess
89bfeada87
recompute: display one of the changed files 2025-03-03 15:12:19 -04:00
Joey Hess
b01a0d2323
avoid recomputing every time on git inputs 2025-03-03 14:56:49 -04:00
Joey Hess
a0d6a6ea2a
support git files as input to computations
Using GIT keys, like are used when exporting git files to special
remotes. Except here the GIT key refers to a file checked into the git
repo.

Note that, since the compute remote uses catObject to get the content,
a symlink that is checked into git does not get followed. This is important
for security, because following a symlink and adding the content to the
repo as an annex object would allow exfiltrating content from outside
the repository.

Instead, the behavior with a symlink is to run the computation on the
symlink target. This may turn out to be confusing, and it might be worth
addcomputed checking if the file in git is a symlink and erroring out.
Or it could follow symlinks as long as the destination is a file in the
repisitory.
2025-03-03 12:09:25 -04:00
Joey Hess
6ebab7fb00
factor out Annex.GitShaKey 2025-03-03 11:09:28 -04:00
Joey Hess
63d73d8d1b
record VURL key hashes in addcomputed and recompute 2025-03-03 10:57:56 -04:00
czard
d7569351bf Added a comment: Permission fix 2025-03-03 12:08:28 +00:00
Joey Hess
2bd64059f1
record VURL key hashes when getting from compute remote
Like when getting from the web special remote, when the output of the
computation has changed, record the new hash of the content as an
equivilant key for the VURL key.

Still needs to be done for addcomputed and recompute.
2025-02-27 16:21:42 -04:00
Joey Hess
b813549b2d
fix build 2025-02-27 16:18:04 -04:00
Joey Hess
d2091730e9
refactor 2025-02-27 16:17:42 -04:00
Joey Hess
e6ae5e8d56
many recompute improvements
I've lost track of them all, but it includes:

* Using the same key backend as was used in the original computation.
* Fixing bug that prevented updating the source file key in the compute
  state
* Handling --reproducible and --unreproducible.
* recompute --original of a file using VURL, when the result is
  different, but the key remains the same, makes the object file
  be updated with the new content
* Detecting some other ways the program behavior can change, just for
  completeness.
* Also adds --backend to addcomputed.
2025-02-27 15:18:27 -04:00
dmcardle
08d998a8ee Added a comment 2025-02-27 19:02:14 +00:00
Joey Hess
1704b5e327
refactoring 2025-02-27 14:54:03 -04:00
Joey Hess
9c2c3002a6
fix recompute of renamed files
When a computed file has been renamed, a recompute needs to write to the
new filename.

I decided to remove --others because it's not clear what it should do in
the face of renames. Should it update only other files that have not
been renamed? Or update files that use the old key to the new key
anywhere in the tree? Or write the other files to the cwd, ignoring
renames? Since --others is just a way to save on compute time, adding
this complexity at this point seems like a bad idea. May revisit later.

Added temporary TODO-compute file
2025-02-27 11:27:26 -04:00
Joey Hess
5d2a608a56
todo 2025-02-26 15:59:47 -04:00
Joey Hess
d6a010a615
recompute closer to working properly
Proper behavior without --others implemented.

And eliminated most of the code duplication through refactoring.

Also, changed it to not stage recomputed files. This way, git diff will
show files that have differences.
2025-02-26 15:52:52 -04:00
Joey Hess
53d107ca47
refactor 2025-02-26 14:05:37 -04:00
Joey Hess
3bec89a3c3
started git-annex recompute
The perform action of this still needs work to do the right thing.
In particular, it currently behaves as if --others was always set.
And, it duplicates a lot of code from addcomputed.
2025-02-26 11:54:09 -04:00
Joey Hess
d49f371acc
showOutput
when the compute program eg displays usage, it needs to start on its own
line
2025-02-26 09:47:56 -04:00
Joey Hess
eed522a0f8
addcomputed inherits extra initremote parameters
This is limited because the remote config is a field/value map. So order
is not preserved, and when 2 parameters have the same field name, only
the last one will be passed.
2025-02-26 09:45:35 -04:00