Commit graph

40117 commits

Author SHA1 Message Date
Joey Hess
26a9ea12d1
handle edge case of symlink to something that is not really a pointer file
That seems very unlikely to happen, but still, it's possible it could.
And with the recent addition of locked files to the keys db, this could
be called by places that did not call it before, so it seems even more
important it's correct.

Adds an extra stat of the file, and is potentially racy, but both
problems are fixed by the unix-2.8.0 path. I have not tested that path
builds because that package is not yet released and it would be difficult
to install it since it's tightly tied to a ghc version.
2021-06-14 11:35:52 -04:00
Joey Hess
673b2feaf3
rename for clarity
Associated files are recorded now also for locked files, but this is
only needed to populate unlocked files.
2021-06-14 10:55:24 -04:00
yarikoptic
8f66f73fea Added a comment 2021-06-09 22:28:06 +00:00
yarikoptic
e30f973323 Added a comment: more "mystery resolved" -- identical (empty) keys 2021-06-09 21:00:34 +00:00
Joey Hess
4b09b93a18
Merge branch 'master' of ssh://git-annex.branchable.com 2021-06-09 15:38:58 -04:00
Joey Hess
fad281767a
comment 2021-06-09 15:38:55 -04:00
yarikoptic
714d9f1315 Added a comment 2021-06-08 22:02:34 +00:00
yarikoptic
a8fb61329d Added a comment 2021-06-08 21:58:20 +00:00
yarikoptic
3985ae3224 Added a comment: OSX mystery resolved. add --batch is effective mitigation 2021-06-08 21:56:53 +00:00
Joey Hess
6cb9113ff5
comments 2021-06-08 17:38:56 -04:00
yarikoptic
c3993a2655 Added a comment 2021-06-08 20:23:09 +00:00
yarikoptic
437d9366b7 Added a comment: getting closer... 2021-06-08 19:21:59 +00:00
Ilya_Shlyakhter
be4a029e1b Added a comment 2021-06-08 19:08:01 +00:00
jenkin.schibel@286264d9ceb79998aecff0d5d1a4ffe34f8b8421
be173f213d 2021-06-08 18:40:09 +00:00
jenkin.schibel@286264d9ceb79998aecff0d5d1a4ffe34f8b8421
e4cf6cc306 removed 2021-06-08 18:26:30 +00:00
Joey Hess
530c957c3e
Merge branch 'master' of ssh://git-annex.branchable.com 2021-06-08 12:52:08 -04:00
yarikoptic
697921ecd8 Added a comment: all recent builds/logs are fetched to smaug 2021-06-08 16:50:12 +00:00
Joey Hess
7b6deb1109
display scanning message whenever reconcileStaged has enough files to chew on
Clear visible progress bar first.

Removed showSideActionAfter because it can't be used in reconcileStaged
(import loop). Instead, it counts the number of files it
processes and displays it after it's seen a sufficient to know it's
taking a while.

Sponsored-by: Dartmouth College's Datalad project
2021-06-08 12:48:30 -04:00
Joey Hess
ecbaa52571
clarification 2021-06-08 12:00:01 -04:00
Joey Hess
1a6fa5abc8
add debugging for reconcileStaged calls for benchmarking 2021-06-08 11:57:23 -04:00
Joey Hess
13b9a288d3
scanAnnexedFiles in smudge --update
This makes git checkout and git merge hooks do the work to catch up with
changes that they made to the tree. Rather than doing it at some later
point when the user is not thinking about that past operation.

Sponsored-by: Dartmouth College's Datalad project
2021-06-08 11:37:47 -04:00
Joey Hess
c380687aa3
Merge branch 'master' of ssh://git-annex.branchable.com 2021-06-08 11:13:09 -04:00
Joey Hess
7f742589f9
claw back annexed file scan speedup
Following commit c941ab6f5b, this avoids
the second, redundant scan when annex.thin is not set.

The benchmark now runs in 35.5 seconds, down from 40 seconds.

Note that the inode cache of the annex object has to be passed to
addInodeCaches now, because it might not already be in the inode caches,
unlike previously.

Sponsored-by: Dartmouth College's Datalad project
2021-06-08 11:09:15 -04:00
Joey Hess
ec1f2f246b
improve comment
remove obsolete part about a commit preventing it seeing changes
2021-06-08 10:43:48 -04:00
yarikoptic
62758ffb9f Added a comment: slow down is OSX specific 2021-06-08 14:28:18 +00:00
Joey Hess
d12120739d
comment 2021-06-08 10:19:04 -04:00
Joey Hess
2125367f3f
Merge branch 'master' of ssh://git-annex.branchable.com 2021-06-08 09:42:57 -04:00
Joey Hess
c941ab6f5b
avoid double work in git-annex init, second try
reconcileStaged populates the db, so scanAnnexedFiles does not need to
do it again. It still makes a pass over the HEAD tree, but populating
the db was most of the expensive part.

Benchmarking with 100,000 files, git-annex init now takes 40 seconds,
vs 37 seconds with the old, buggy version of this fix. It should be
possible to win those 3 precious seconds per 100k files back, in the
case when when annex.thin is not set, with improvements to reconcileStaged
that avoid needing this second pass.

Sponsored-by: Dartmouth College's Datalad project
2021-06-08 09:36:53 -04:00
Joey Hess
22185b4a4e
stop using addAssociatedFileFast
Use addAssociatedFile instead, after recent optimisations it seems just
as fast.
2021-06-08 09:23:28 -04:00
Joey Hess
2cb7b7b336
Revert "avoid double work in git-annex init"
This reverts commit 0f10f208a7.

The implementation of this turns out to be unsafe; it can lead to a keys
db deadlock. scanAnnexedFiles injects a call to inAnnex into
reconcileStaged, but inAnnex sometimes needs to read from the keys db,
which will try to re-open it when it's in the process of being opened.
The exclusive lock of gitAnnexKeysDbLock will then deadlock.

This needs to be done in some other way...
2021-06-08 09:11:24 -04:00
Joey Hess
c831a562f5
faster associated file replacement with upsert
Rather than first deleting and then inserting, upsert lets the key
associated with a file be updated in place.

Benchmarked with 100,000 files, and an empty keys database, running
reconcileStaged. It improved from 47 seconds to 34 seconds.
So this got reconcileStaged to be as fast as scanAssociatedFiles,
or faster -- scanAssociatedFiles benchmarks at 37 seconds.

(Also checked for other users of deleteWhere that could be sped up by
upsert. There are a couple, but they are not in performance critical
code paths, eg recordExportTreeCurrent is only run once per tree
export.)

I would have liked to rename FileKeyIndex to FileKeyUnique since it is
being used as a uniqueness constraint now, not just to get an index.
But, that gets converted into part of the SQL schema, and the name
is used by the upsert, so it can't be changed.

Sponsored-by: Dartmouth College's Datalad project
2021-06-08 07:53:36 -04:00
yarikoptic
57b567ac87 Added a comment 2021-06-07 21:39:05 +00:00
yarikoptic
2ffb9cc01b Added a comment: clarification 2021-06-07 21:20:35 +00:00
Joey Hess
e9a8b48a52
Merge branch 'master' of ssh://git-annex.branchable.com 2021-06-07 17:02:15 -04:00
Joey Hess
2467de4f9b
todo 2021-06-07 16:58:35 -04:00
Joey Hess
0f10f208a7
avoid double work in git-annex init
reconcileStaged was doing a redundant scan to scannAnnexedFiles.

It would probably make sense to move the body of scannAnnexedFiles
into reconcileStaged, the separation does not really serve any purpose.

Sponsored-by: Dartmouth College's Datalad project
2021-06-07 16:50:14 -04:00
Joey Hess
6ceb31a30a
optimise reconcileStaged with git cat-file streaming
Commit 428c91606b made it need to do more
work in situations like switching between very different branches.

Compare with seekFilteredKeys which has a similar optimisation. Might be
possible to factor out the common part from these?

Sponsored-by: Dartmouth College's Datalad project
2021-06-07 15:26:48 -04:00
Joey Hess
70dbe61fc2
remove unnecessary liftIO 2021-06-07 14:51:12 -04:00
Ilya_Shlyakhter
bdf3c06401 Added a comment: deferring the scan 2021-06-07 17:41:45 +00:00
Joey Hess
570e93abfd
comment 2021-06-07 13:28:36 -04:00
Joey Hess
1c35cacf8e
fix link 2021-06-07 13:06:16 -04:00
Joey Hess
b960ebf1b3
Merge branch 'master' of ssh://git-annex.branchable.com 2021-06-07 12:59:21 -04:00
Joey Hess
0101363eb8
correctly update keys db in merge conflict
This is quite a subtle edge case, see the bug report for full details.

The second git diff is needed only when there's a merge conflict.
It would be possible to speed it up marginally by using
--diff-filter=Unmerged, but probably not enough to bother with.

Sponsored-by: Graham Spencer on Patreon
2021-06-07 12:52:36 -04:00
Ilya_Shlyakhter
4d581ad6b4 Added a comment: deferring the keys-to-files scan 2021-06-07 16:11:01 +00:00
Joey Hess
da24034331
comment 2021-06-07 11:53:25 -04:00
Joey Hess
a0bba3afad
comment 2021-06-07 11:49:28 -04:00
Joey Hess
3aabaa1a2b
Merge branch 'master' of ssh://git-annex.branchable.com 2021-06-07 11:47:13 -04:00
Joey Hess
254199edc9
comment 2021-06-07 11:46:47 -04:00
Ilya_Shlyakhter
5359f8bc14 added suggestion to match keys by file extension in the key 2021-06-07 15:08:51 +00:00
Ilya_Shlyakhter
def7e001c6 Added a comment: keeping connected files together 2021-06-07 14:45:35 +00:00