Fixed up a number of things that had worked around there not being a way to
get that.
Most notably, transfer info files on windows now include the process id,
since no locking is currently done. This means the file format varies
between windows and unix.
Windows has a larger (unsigned) PID space, so cannot use the unix CInt
there.
Note that TransferInfo does not yet ever get the TransferPid populated,
as there is missing locking.
transferkeys had used special FDs for communication, but that would be
quite annoying to do in Windows.
Instead, use stdin and stdout. But, to avoid commands like rsync stomping
on them and messing up the communications channel, they're duplicated to a
different handle; stdin is replaced with a null handle, and stdout is
replaced with a copy of stderr. This should all work in windows too.
Stopping in progress transfers may work on windows.. if the types unify
anyway. ;) May need some more porting.
Fixes a test case I received where a corrupted repo was repaired, but the
git-annex branch was not. The root of the problem was that the
MissingObject returned by the repair code was not necessarily a complete
set of all objects that might have been deleted during the repair.
So, stop trying to return that at all, and instead make the index file
checking code explicitly verify that each object the index uses is present.
The assistant's commit code also always avoids git commit, for simplicity.
Indirect mode sync still does a git commit -a to catch unstaged changes.
Note that this means that direct mode sync no longer runs the pre-commit
hook or any other hooks git commit might call. The git annex pre-commit
hook action for direct mode is however explicitly run. (The assistant
already ran git commit with hooks disabled, so no change there.)
