This is needed for robust handling of the git-annex branch. Since changes
are staged to its index as git-annex runs, and committed at the end,
it's possible that git-annex is interrupted, and leaves a dirty index.
When it next runs, it needs to be able to merge the git-annex branch
as necessary, without losing the existing changes in the index.
Note that this assumes that the git-annex branch is only modified by
git-annex. Any changes to it will be lost when git-annex updates the
branch. I don't see a good, inexpensive way to find changes in
the git-annex branch that arn't in the index, and union merging the
git-annex branch into the index every time would likewise be expensive.
