git add --update cannot be used, because it'll stage typechanged direct
mode files. Intead, use ls-files to find deleted files, and stage them
ourselves.
It seems that no commit was made before when the scan staged deleted files.
(Probably masked since if files were added, a commit happened then..)
Now that I'm doing the staging, I was also able to fix that bug.
I'm down to 9 places in the code that can produce unwaited for zombies.
Most of these are pretty innocuous, at least for now, are only
used in short-running commands, or commands that run a set of
actions and explicitly reap zombies after each one.
The one from Annex.Branch.files could be trouble later,
since both Command.Fsck and Command.Unused can trigger it,
and the assistant will be doing those eventally. Ditto the one in
Git.LsTree.lsTree, which Command.Unused uses.
The only ones currently affecting the assistant though, are
in Git.LsFiles. Several threads use several of those.
(And yeah, using pipes or ResourceT would be a less ad-hoc approach,
but I don't really feel like ripping my entire code base apart right
now to change a foundation monad. Maybe one of these days..)
Baked into the code was an assumption that a repository's git directory
could be determined by adding ".git" to its work tree (or nothing for bare
repos). That fails when core.worktree, or GIT_DIR and GIT_WORK_TREE are
used to separate the two.
This was attacked at the type level, by storing the gitdir and worktree
separately, so Nothing for the worktree means a bare repo.
A complication arose because we don't learn where a repository is bare
until its configuration is read. So another Location type handles
repositories that have not had their config read yet. I am not entirely
happy with this being a Location type, rather than representing them
entirely separate from the Git type. The new code is not worse than the
old, but better types could enforce more safety.
Added support for core.worktree. Overriding it with -c isn't supported
because it's not really clear what to do if a git repo's config is read, is
not bare, and is then overridden to bare. What is the right git directory
in this case? I will worry about this if/when someone has a use case for
overriding core.worktree with -c. (See Git.Config.updateLocation)
Also removed and renamed some functions like gitDir and workTree that
misused git's terminology.
One minor regression is known: git annex add in a bare repository does not
print a nice error message, but runs git ls-files in a way that fails
earlier with a less nice error message. This is because before --work-tree
was always passed to git commands, even in a bare repo, while now it's not.
Many functions took the repo as their first parameter. Changing it
consistently to be the last parameter allows doing some useful things with
currying, that reduce boilerplate.
In particular, g <- gitRepo is almost never needed now, instead
use inRepo to run an IO action in the repo, and fromRepo to get
a value from the repo.
This also provides more opportunities to use monadic and applicative
combinators.
This yields a second or so speedup in unused, find, etc. Seems that even
when the ByteString is immediately split and then converted to Strings,
it's faster.
I may try to push ByteStrings out into more of git-annex gradually,
although I suspect most of the time-critical parts are already covered
now, and many of the rest rely on libraries that only support Strings.
