Merge branch 'master' of ssh://git-annex.branchable.com

doc/bugs/Numcopies_not_checked_when_running_with_--all.mdwn

@@ -0,0 +1,24 @@
+### Please describe the problem.
+There are a lot of differences in the behaviour of usual commands and commans using --all.
+The specific problem I found was that "git annex fsck --all" will only checksum it seems and not report back numcopies failures.
+Checking if objects/old versions have propagated is not possible without it or do I miss something.
+
+(As additional note not sure if related. It seems that git annex fsck --all is running much faster in my tests 1/3 faster. Any reason for that? Bug related?)
+
+
+### What steps will reproduce the problem?
+compare "git annex fsck" vs "git annex fsck" (no numcopies check)
+
+### What version of git-annex are you using? On what operating system?
+git-annex version: 5.20140210-gd99db49
+Linux (Ubuntu 13.10)
+
+### Please provide any additional information below.
+
+[[!format sh """
+# If you can, paste a complete transcript of the problem occurring here.
+# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log
+
+
+# End of transcript or log.
+"""]]

doc/bugs/can__39__t_drop_unused_files_that_never_were_added.mdwn

@@ -0,0 +1,81 @@
+### Please describe the problem.
+
+When adding files to the annex and then deciding against it in an "unusual" way, git-annex gets confused and the file left behind can't be removed from the annex...
+
+### What steps will reproduce the problem?
+
+1. Add file with "git annex add"
+2. Decide you don't need the file add all
+3. "git rm -f newfile"
+4. "git annex unused"
+5. "git annex dropunused all"
+
+### What version of git-annex are you using? On what operating system?
+
+git-annex version: 5.20140210 on Debian unstable
+
+### Please provide any additional information below.
+
+[[!format sh """
+# If you can, paste a complete transcript of the problem occurring here.
+# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log
+$ git init
+Initialized empty Git repository in /tmp/foo/.git/
+$ ls -l
+total 0
+$ cp ~/download/hub-ctrl.c .
+$ git add hub-ctrl.c
+$ git commit
+[master (root-commit) ed7eb68] A file.
+ 1 file changed, 412 insertions(+)
+ create mode 100644 hub-ctrl.c
+$ cp ~/download/hub-ctrl .
+$ ls -l
+total 28
+-rwxr-xr-x 1 tobias tobias 14130 Feb 19 00:49 hub-ctrl
+-rw-r--r-- 1 tobias tobias  9270 Feb 19 00:48 hub-ctrl.c
+$ git annex init
+init  ok
+(Recording state in git...)
+$ git annex add
+add hub-ctrl ok
+(Recording state in git...)
+$ git status
+On branch master
+Changes to be committed:
+  (use "git reset HEAD <file>..." to unstage)
+
+	new file:   hub-ctrl
+
+$ git rm hub-ctrl
+error: the following file has changes staged in the index:
+    hub-ctrl
+(use --cached to keep the file, or -f to force removal)
+$ git rm -f hub-ctrl
+rm 'hub-ctrl'
+$ git status
+On branch master
+nothing to commit, working directory clean
+$ git annex unused
+unused . (checking for unused data...) (checking HEAD...) 
+  Some annexed data is no longer used by any files:
+    NUMBER  KEY
+    1       SHA256E-s14130--d4e777ba2b99ed0a520fbabe7b93cf2165373b4945afe8dcb626231d9051f19d
+  (To see where data was previously used, try: git log --stat -S'KEY')
+  
+  To remove unwanted data: git-annex dropunused NUMBER
+  
+ok
+$ git annex dropunused all
+dropunused 1 (unsafe) 
+  Could only verify the existence of 0 out of 1 necessary copies
+
+  Rather than dropping this file, try using: git annex move
+
+  (Use --force to override this check, or adjust numcopies.)
+failed
+git-annex: dropunused: 1 failed
+$
+
+# End of transcript or log.
+"""]]

doc/bugs/git_repo_fails_to_checkout.mdwn

@@ -0,0 +1,22 @@
+### Please describe the problem.
+
+Attempting to clone the git repository produces
+
+    (master) cayley:git-annex% git checkout -f HEAD
+    error: unable to create file doc/bugs/fatal:_unable_to_access___39__..__47__..__47__..__47__..__47__C:__92__Users__92____91__...__93____92__annex__92__.git__47__config__39__:_Invalid_argument___40__Windows__41__.mdwn (File name too long)
+    fatal: cannot create directory at 'doc/bugs/fatal:_unable_to_access___39__..__47__..__47__..__47__..__47__C:__92__Users__92____91__...__93____92__annex__92__.git__47__config__39__:_Invalid_argument___40__Windows__41__': File name too long
+
+### What steps will reproduce the problem?
+
+I get the above with either
+
+    git clone https://github.com/joeyh/git-annex
+
+or (after this fails) retrying with
+
+    cd git-annex
+    git checkout -f HEAD
+
+### What version of git-annex are you using? On what operating system?
+
+I am running git 1.9.0 from git (5f95c9f850b19b368c43ae399cc831b17a26a5ac in the git git repo) on Ubuntu 13.04.

doc/bugs/git_repo_fails_to_checkout/comment_1_d92e7e3b41382501a08f6a66c673b1fd._comment

@@ -0,0 +1,8 @@
+[[!comment format=mdwn
+ username="http://geoffreyirving.myopenid.com/"
+ nickname="Geoffrey Irving"
+ subject="encrypted home directory"
+ date="2014-02-18T18:05:24Z"
+ content="""
+It looks like this problem is related to using an encrypted home directory.
+"""]]

doc/devblog/day_-4__forgetting/comment_2_e47476c80af02a2e9cf76c53fdbb8534._comment

@@ -0,0 +1,9 @@
+[[!comment format=mdwn
+ username="stp"
+ ip="188.193.207.34"
+ subject="Update one forgetting keys no longer present"
+ date="2014-02-17T23:21:49Z"
+ content="""
+I have some repos where due to some hiccups file versions (not in the working tree anymore) were lost and now they come up again and again when fsck is running.
+So I would be happy if I could make my repos forget these not available files via \"git annex forget $key\" and perhaps even have a better solution to show all objects with numcopies=0.
+"""]]

doc/forum/Problems_with_large_numbers_of_files/comment_8_0070d1fbb643380b92bd974564fb9702._comment

@@ -0,0 +1,27 @@
+[[!comment format=mdwn
+ username="https://www.google.com/accounts/o8/id?id=AItOawnFjuvfPpi1kf6l54bxfFUm0Aw_Gf_IO0o"
+ nickname="Aaron"
+ subject="Too big to fsck"
+ date="2014-02-17T22:33:38Z"
+ content="""
+Hi,
+
+My Webapp isn't working:
+$ git-annex webapp
+error: refs/gcrypt/gitception+ does not point to a valid object!
+error: refs/remotes/Beta/git-annex does not point to a valid object!
+error: refs/remotes/Beta/master does not point to a valid object!
+fatal: unable to read tree 656e7db5be172f01c0b6994d01f1a08d1273af12
+
+So I tried to repair it:
+$ git-annex repair
+Running git fsck ...
+Stack space overflow: current size 8388608 bytes.
+Use `+RTS -Ksize -RTS' to increase it.
+
+So I tried to follow your advice here and increase the stack:
+$ git-annex +RTS -K35000000 -RTS fsck
+git-annex: Most RTS options are disabled. Link with -rtsopts to enable them.
+
+I wasn't sure what to do next, so any help would be appreciated. 
+"""]]

doc/tips/using_Amazon_Glacier.mdwn

@@ -24,7 +24,7 @@ repository use the same Glacier remote is easy:
 
         # cd /media/usb/annex
         # git pull laptop
-        # git annex initremote glacier
+        # git annex enableremote glacier
         initremote glacier (gpg) ok
 
 Now the remote can be used like any other remote.

doc/tips/using_Amazon_Glacier/comment_1_ccee7f4f5a483a3650270b6e09ab7293._comment

@@ -0,0 +1,36 @@
+[[!comment format=mdwn
+ username="http://grossmeier.net/"
+ nickname="greg"
+ subject="missing steps?"
+ date="2014-02-18T23:51:00Z"
+ content="""
+I setup a glacier remote on one machine and it successfully created the vault and is syncing files to it.
+
+One another machine, after git-annex sync'ing, I did:
+
+
+[[!format sh \"\"\"
+greg@x200s:~/Photos$ git-annex enableremote glacier
+enableremote glacier 
+  Set both AWS_ACCESS_KEY_ID and AWS_SECRET_ACCESS_KEY to use glacier
+git-annex: Failed creating glacier vault.
+\"\"\"]]
+
+So then I try:
+[[!format sh \"\"\"
+greg@x200s:~/Photos$ AWS_ACCESS_KEY_ID=HAHA AWS_SECRET_ACCESS_KEY=NOPE git-annex --debug enableremote glacier
+[2014-02-18 15:43:56 PST] read: git [\"--git-dir=/home/greg/Photos/.git\",\"--work-tree=/home/greg/Photos\",\"show-ref\",\"git-annex\"]
+[2014-02-18 15:43:56 PST] read: git [\"--git-dir=/home/greg/Photos/.git\",\"--work-tree=/home/greg/Photos\",\"show-ref\",\"--hash\",\"refs/heads/git-annex\"]
+[2014-02-18 15:43:56 PST] read: git [\"--git-dir=/home/greg/Photos/.git\",\"--work-tree=/home/greg/Photos\",\"log\",\"refs/heads/git-annex..8108714116d08f93aa427b9ddced48cd5f2b4b72\",\"--oneline\",\"-n1\"]
+[2014-02-18 15:43:56 PST] read: git [\"--git-dir=/home/greg/Photos/.git\",\"--work-tree=/home/greg/Photos\",\"log\",\"refs/heads/git-annex..742ba908f791e440a6cc85073ef505a96dd66aa4\",\"--oneline\",\"-n1\"]
+[2014-02-18 15:43:56 PST] read: git [\"--git-dir=/home/greg/Photos/.git\",\"--work-tree=/home/greg/Photos\",\"log\",\"refs/heads/git-annex..071487394544a20253a70ada4ea71fcc28f9fc13\",\"--oneline\",\"-n1\"]
+[2014-02-18 15:43:56 PST] read: git [\"--git-dir=/home/greg/Photos/.git\",\"--work-tree=/home/greg/Photos\",\"log\",\"refs/heads/git-annex..c8aecc22da7b84bbb82f083ce783cc699cef1c67\",\"--oneline\",\"-n1\"]
+[2014-02-18 15:43:56 PST] chat: git [\"--git-dir=/home/greg/Photos/.git\",\"--work-tree=/home/greg/Photos\",\"cat-file\",\"--batch\"]
+enableremote glacier [2014-02-18 15:43:56 PST] call: glacier [\"--region=us-west-2\",\"vault\",\"create\",\"glacier-7e5c0010-2634-4a5e-bc7b-6fea84b8b947\"]
+git-annex: Failed creating glacier vault.
+\"\"\"]]
+
+What am I missing?
+
+Also, why is it trying to *create* the valut? It's already there with content in it!
+"""]]

doc/todo/whislist:_allow_setting_annex-ignore_from_the_webapp.mdwn

@@ -0,0 +1,2 @@
+I would like to be able to set 'annex-ignore' for remote servers through the webapp.
+Maybe a checkbox beneath "Syncing enabled" with something like "Also sync content" that it's checked by default?