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initial report on odd "modified" status

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yarikoptic 2022-09-20 22:22:42 +00:00 committed by admin
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### Please describe the problem.
git status reports having staged changes and no changes from index
```shell
(git-annex) dandi@drogon:/mnt/backup/dandi/dandisets/000026$ git status
On branch draft
Your branch is up to date with 'github/draft'.
Changes not staged for commit:
(use "git add <file>..." to update what will be committed)
(use "git restore <file>..." to discard changes in working directory)
modified: .dandi/assets.json
no changes added to commit (use "git add" and/or "git commit -a")
(git-annex) dandi@drogon:/mnt/backup/dandi/dandisets/000026$ git annex status
M ./.dandi/assets.json
```
although git shows no diff and sha256 checksum corresponds to the key:
```shell
(git-annex) dandi@drogon:/mnt/backup/dandi/dandisets/000026$ git diff --cached
(git-annex) dandi@drogon:/mnt/backup/dandi/dandisets/000026$ git show -- .dandi/assets.json
commit b859efed7ddb2ff31cc26168f40676c572d2798f (HEAD -> draft, github/draft, github/HEAD)
Author: DANDI User <info@dandiarchive.org>
Date: Fri Sep 16 22:22:29 2022 +0000
[backups2datalad] 66 files added
diff --git a/.dandi/assets.json b/.dandi/assets.json
index d3ef95e1ee..62fe372810 100644
--- a/.dandi/assets.json
+++ b/.dandi/assets.json
@@ -1 +1 @@
-/annex/objects/SHA256E-s69400783--8b576786d3926ab0e84809b4131cdc5a8f631674d378afa343e7dcd84f011c90.json
+/annex/objects/SHA256E-s69507227--6a0a91c4158d316ab8ad9bd8ebf7579b9c3c579e1035c48134246b6a5d2f6f14.json
(git-annex) dandi@drogon:/mnt/backup/dandi/dandisets/000026$ sha256sum .dandi/assets.json
6a0a91c4158d316ab8ad9bd8ebf7579b9c3c579e1035c48134246b6a5d2f6f14 .dandi/assets.json
```
I think may be the tricky part is that I have it of
```
(git-annex) dandi@drogon:/mnt/backup/dandi/dandisets/000026$ git config annex.version
10
```
although I thought that we kept it at 8 but I have user wider config setting
```
(git-annex) dandi@drogon:/mnt/backup/dandi/dandisets/000026$ git config filter.annex.process
git-annex filter-process
```
I was recommended to speed up operations while avoiding upgrade to 10, but I guess running most recent version once lead to the upgrade since all the other repos are still at 8 as I thought it would be
```
(git-annex) dandi@drogon:/mnt/backup/dandi/dandisets/000026$ grep -h '\<version =' ../*/.git/config | sort | uniq -c
1 version = 10
186 version = 8
```
having it reported modified causes our script which does sanity check to operate only on clean repo to fail.
`git reset --hard` seems mitigated that
```
(git-annex) dandi@drogon:/mnt/backup/dandi/dandisets/000026$ git reset --hard
HEAD is now at b859efed7d [backups2datalad] 66 files added
(git-annex) dandi@drogon:/mnt/backup/dandi/dandisets/000026$ git status
On branch draft
Your branch is up to date with 'github/draft'.
nothing to commit, working tree clean
```
all. I will now rerun our script and see in what state I would end up (although, once again, I ended up in version 10 of the repo already, so may be behavior would be different).
### What steps will reproduce the problem?
I think I get it after I `annex move` and then `annex get` that file back. Just for my own reference -- git-annex repo is result of the https://github.com/dandi/dandisets/blob/draft/tools/backups2datalad-update-cron
### What version of git-annex are you using? On what operating system?
10.20220822-g84f1875 (conda build), originally observed on earlier 10.20220724-ge30d846
[[!meta author=yoh]]
[[!tag projects/dandi]]