diff --git a/doc/bugs/SQLite3_database_disk_image_malformed.mdwn b/doc/bugs/SQLite3_database_disk_image_malformed.mdwn new file mode 100644 index 0000000000..ca25c815f4 --- /dev/null +++ b/doc/bugs/SQLite3_database_disk_image_malformed.mdwn @@ -0,0 +1,43 @@ +### Please describe the problem. + +When trying to operate one of my repositories I'm getting this error: + +[[!format sh """ +git-annex: thread blocked indefinitely in an MVar operation +error: external filter 'git-annex filter-process' failed +"""]] + + +### What steps will reproduce the problem? + +Any of the git-annex commands I've tried, such as fsck. + + +### What version of git-annex are you using? On what operating system? + +I was running 10.20230126-3 on Debian Bookworm, but I've tried upgrading to 10.20241202-1~bpo12+1 from bookworm-backports in the hope that'd fix it. + +### Please provide any additional information below. + +I've enabled debugging, and this appears to be the relevant lines (running git annex status): + +[[!format sh """ +... +[2025-02-15 23:26:58.262822935] (Database.Handle) commitDb start +[2025-02-15 23:26:58.676202887] (Database.Handle) commitDb failed: SQLite3 returned ErrorNotFound while attempting to perform step: database disk image is malformed +[2025-02-15 23:26:58.776543627] (Database.Handle) commitDb start +[2025-02-15 23:26:59.110186761] (Database.Handle) commitDb BlockedIndefinitelyOnMVar +[2025-02-15 23:26:59.110415878] (Utility.Process) process [30460] done ExitSuccess +[2025-02-15 23:26:59.1104987] (Utility.Process) process [30459] done ExitSuccess +git-annex: sqlite worker thread crashed: user error (SQLite3 returned ErrorNotFound while attempting to perform step: database disk image is malformed(after successful open)) +error: external filter 'git-annex filter-process' failed +... +"""]] + +The only SQLite3 database I can find is in .git/annex/keysdb . I can open that using sqlite3 and select from the tables with no error messages. Is there another file it is trying to access? + +### Have you had any luck using git-annex before? (Sometimes we get tired of reading bug reports all day and a lil' positive end note does wonders) + +I've been happily using git-annex for many many years, first time I've encountered an issue like this. + +