Added a comment: reinject files
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[[!comment format=mdwn
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username="thowz"
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subject="reinject files"
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date="2016-05-04T00:52:38Z"
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content="""
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Here's a way to put files into their proper case-sensitive folders using `git-annex reinject --known`:
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# Enable write permissions on directories containing misfiled items
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chmod u+w `find -xtype l -printf \"%l\n\" | sed -r \"s/.*(\.git\/annex\/objects\/)[^\/]*\/[^\/]*\/([^\/]*).*/\1*\/*\/\2/\" | sort | uniq`
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# Reinject those files into the annex
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git-annex reinject --known `find -xtype l -printf \"%l\n\" | sed -r \"s/.*(\.git\/annex\/objects\/)[^\/]*\/[^\/]*\/([^\/]*.*)/\1*\/*\/\2/\" | sort | uniq`
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# Remove empty directories (rmdir will fail on the non-empty directories)
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find .git/annex/objects -mindepth 3 -maxdepth 3 -type d -exec rmdir {} \;
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find .git/annex/objects -mindepth 2 -maxdepth 2 -type d -exec rmdir {} \;
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"""]]
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