Bugfix to getting content from an export remote with -J, when the export database was not yet populated.
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4 changed files with 37 additions and 18 deletions
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@ -34,6 +34,8 @@ git-annex (8.20200221) UNRELEASED; urgency=medium
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* Auto upgrades from older repo versions, like v5, now jump right to v8.
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* Extended annex.security.allowed-ip-addresses to let specific ports
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of an IP address to be used, while denying use of other ports.
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* Bugfix to getting content from an export remote with -J, when the
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export database was not yet populated.
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-- Joey Hess <id@joeyh.name> Wed, 19 Feb 2020 12:48:58 -0400
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@ -160,7 +160,6 @@ adjustExportImport r rs = case getRemoteConfigValue exportTreeField (config r) o
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{ storeExport = \f k loc p -> do
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db <- getciddb ciddbv
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exportdb <- getexportdb exportdbv
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updateexportdb exportdb exportdbv
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oldks <- liftIO $ Export.getExportTreeKey exportdb loc
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oldcids <- liftIO $ concat
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<$> mapM (ContentIdentifier.getContentIdentifiers db rs) oldks
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@ -277,8 +276,7 @@ adjustExportImport r rs = case getRemoteConfigValue exportTreeField (config r) o
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lcklckv <- liftIO newEmptyTMVarIO
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dbv <- liftIO newEmptyTMVarIO
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exportinconflict <- liftIO $ newTVarIO False
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exportupdated <- liftIO $ newTMVarIO ()
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return (dbv, lcklckv, exportinconflict, exportupdated)
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return (dbv, lcklckv, exportinconflict)
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-- Only open the database once it's needed.
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getciddb (dbtv, lcklckv) =
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@ -300,13 +298,18 @@ adjustExportImport r rs = case getRemoteConfigValue exportTreeField (config r) o
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)
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-- Only open the database once it's needed.
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getexportdb (dbv, lcklckv, _, _) =
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--
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-- After opening the database, check if the export log is
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-- different than the database, and update the database, to notice
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-- when an export has been updated from another repository.
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getexportdb (dbv, lcklckv, exportinconflict) =
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liftIO (atomically (tryReadTMVar dbv)) >>= \case
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Just db -> return db
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-- let only one thread take the lock
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Nothing -> ifM (liftIO $ atomically $ tryPutTMVar lcklckv ())
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( do
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db <- Export.openDb (uuid r)
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updateexportdb db exportinconflict
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liftIO $ atomically $ putTMVar dbv db
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return db
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-- loser waits for winner to open the db and
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@ -314,24 +317,18 @@ adjustExportImport r rs = case getRemoteConfigValue exportTreeField (config r) o
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, liftIO $ atomically (readTMVar dbv)
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)
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getexportinconflict (_, _, v, _) = v
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getexportinconflict (_, _, v) = v
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-- Check once if the export log is different than the database and
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-- updates the database, to notice when an export has been
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-- updated from another repository.
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updateexportdb db (_, _, exportinconflict, exportupdated) =
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liftIO (atomically (tryTakeTMVar exportupdated)) >>= \case
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Just () -> Export.updateExportTreeFromLog db >>= \case
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Export.ExportUpdateSuccess -> return ()
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Export.ExportUpdateConflict -> do
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warnExportImportConflict r
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liftIO $ atomically $
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writeTVar exportinconflict True
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Nothing -> return ()
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updateexportdb db exportinconflict =
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Export.updateExportTreeFromLog db >>= \case
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Export.ExportUpdateSuccess -> return ()
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Export.ExportUpdateConflict -> do
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warnExportImportConflict r
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liftIO $ atomically $
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writeTVar exportinconflict True
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getexportlocs dbv k = do
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db <- getexportdb dbv
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updateexportdb db dbv
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liftIO $ Export.getExportTree db k
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retrieveKeyFileFromExport dbv k _af dest p = unVerified $
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@ -89,3 +89,5 @@ get sub-01/meg/sub-01_task-audiovisual_run-01_meg.fif (from s3-PUBLIC...)
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[[!meta author=yoh]]
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[[!tag projects/repronim]]
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> [[fixed|done]] --[[Joey]]
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@ -0,0 +1,18 @@
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[[!comment format=mdwn
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username="joey"
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subject="""comment 4"""
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date="2020-02-26T18:22:46Z"
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content="""
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How do I produce such a repo, I thought that git-annex has fixed the
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problem that made it not include the S3 versioning information?
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I don't want to see a lot of repos being created with that information
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missing.
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----
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Anyway, the S3 version is is a red herring, the failure is actually
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caused by the export db not getting populated from the git-annex branch
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before some threads try to use it. Remote.Helper.ExportImport has a
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updateexportdb that lets one thread update the db, but other threads
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don't block waiting for it. Easily fixed.
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"""]]
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